AT4G33180

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005845
Physical Location & Seq
Forward (+)
16000015 .. 16002269
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33180.1

Sequence Viewer

Length: 924 bp
ATGTCGCTGTCGTCTTACCTCAGCCCGACGCGCCTTCTAGAAGGCTACCTCCGCCGTTGTCTCAGGGCGGCAGGACTGACGTCGCAGACGCTTTCCATAGACTCTGAAACAACCATCCACTTCTGGGGCCCACCACCTCTAGACCACCGGAGCGACGATGACAGACCGGTTATGCTTCTCCTCCACGGCTTCGGTCCGTCGTCCATGTGGCAGTGGCGGCGACAGATGCAAGCCTTCTCTCCCTCCGCTTTCAGGGTTTATTCTCCCGATCTTGTCTTCTTCGGCGACTCTACCTCTTCCTCCACCAATCGCACCGAAGTCTTCCAGGCGGAATGTATGGCAAAGCTAATGGCGAAAATAGGAATAGGGAAGTATAATGTGGCTGGAACAAGCTACGGGGGGTTTGTTGCGTACCACATGGCCAAAATGTGGCCGGAAAAAGTGGAGAAAGTGGTGATTGCAAGCTCCGGCATCAACATGCGAAAGTGTGACGGTGAAAGTTTATTGCAAAGATCCAATTGTGAGTGCATCGAGAAGGTTATGTTACCATCCACTGCAACTGAGTTTCGCACACTTATGGCTTTGGCATCTTCATGGCGGTTAGTTCGTATGTTTCCTGATGCTCTCTGGAACGACGTAATCAATAATTTGTATAAAAAGAATAGAAAAGAGAAGATAGAATTGTTGAAGGGAGTGACTTTCGGCCGGAGCGAAAATTTAAACATCGATTCTCTTTCTCAGGAGGTCCTAATTGTATGGGGAGACAAAGATCAGATATTTCCTGTGAAGATGGCTTACGAATTAAAAGAGATTCTTGGAGACAAAACGAAACTAGAAATCATTGACAACACTTCACATGTTCCTCAGATTGAATGTGCTCAAGAGTTCAACAATATTGTTTTGAGATTTTTGAAGGGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

307

Amino Acids

34.84

Weight (kDa)

8.45

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 56 - 291 3.9e-25 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 59 - 297 8.9e-14 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 429
AccII CGCG 1 cut(s) 31
AciI CCGC 6 cut(s) 52, 68, 217, 246, 329, 598
AclWI GGATC 1 cut(s) 507
AcoI YGGCCR 3 cut(s) 420, 431, 703
AcsI RAATTY 1 cut(s) 715
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 413
AfiI CCNNNNNNNGG 3 cut(s) 124, 252, 429
AflIII ACRYGT 1 cut(s) 856
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 4 cut(s) 688, 872, 889, 913
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 3 cut(s) 346, 393, 465
AluI AGCT 3 cut(s) 346, 393, 465
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 3 cut(s) 65, 756, 813
AlwI GGATC 1 cut(s) 507
AoxI GGCC 4 cut(s) 127, 420, 431, 703
ApaI GGGCCC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 715
AsiGI ACCGGT 1 cut(s) 166
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 4 cut(s) 127, 128, 194, 745
AsuHPI GGTGA 2 cut(s) 466, 506
AvaII GGWCC 2 cut(s) 194, 745
BaeGI GKGCMC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 422
BanII GRGCYC 1 cut(s) 131
BarI GAAGNNNNNNTAC 2 cut(s) 779, 811
BbsI GAAGAC 2 cut(s) 268, 313
Bbv12I GWGCWC 1 cut(s) 880
BbvCI CCTCAGC 1 cut(s) 20
BccI CCATC 3 cut(s) 122, 556, 784
BceAI ACGGC 2 cut(s) 39, 202
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 3 cut(s) 65, 756, 813
BfaI CTAG 3 cut(s) 38, 140, 833
BisI GCNGC 2 cut(s) 69, 218
BlsI GCNGC 2 cut(s) 70, 219
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 2 cut(s) 194, 745
BmgT120I GGNCC 4 cut(s) 127, 128, 194, 745
BmiI GGNNCC 2 cut(s) 128, 129
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 5 cut(s) 216, 480, 537, 596, 610
BoxI GACNNNNGTC 1 cut(s) 79
BpiI GAAGAC 2 cut(s) 268, 313
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 864
Bsa29I ATCGAT 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 2 cut(s) 147, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 252, 429
Bse118I RCCGGY 1 cut(s) 166
BseBI CCWGG 1 cut(s) 326
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 2 cut(s) 114, 548
BseLI CCNNNNNNNGG 3 cut(s) 124, 252, 429
BseMII CTCAG 5 cut(s) 34, 76, 552, 752, 878
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 703
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 4 cut(s) 129, 422, 433, 705
BshTI ACCGGT 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 726
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 880
BsiSI CCGG 5 cut(s) 148, 167, 434, 468, 706
BslI CCNNNNNNNGG 3 cut(s) 124, 252, 429
BsmAI GTCTC 3 cut(s) 65, 756, 813
BsnI GGCC 4 cut(s) 129, 422, 433, 705
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 131, 880
Bsp143I GATC 3 cut(s) 268, 512, 769
BspACI CCGC 6 cut(s) 52, 68, 217, 246, 329, 598
BspANI GGCC 4 cut(s) 129, 422, 433, 705
BspCNI CTCAG 5 cut(s) 33, 75, 553, 751, 877
BspDI ATCGAT 1 cut(s) 726
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 128, 129
BspPI GGATC 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 3 cut(s) 268, 512, 769
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 1 cut(s) 301
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 231, 463
BstDEI CTNAG 5 cut(s) 20, 62, 561, 738, 864
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 114, 548
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 3 cut(s) 271, 515, 772
BstMAI GTCTC 3 cut(s) 65, 756, 813
BstMBI GATC 3 cut(s) 268, 512, 769
BstMCI CGRYCG 1 cut(s) 706
BstMWI GCNNNNNNNGC 4 cut(s) 30, 51, 217, 226
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 2 cut(s) 481, 860
BstPAI GACNNNNGTC 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 324
BstSLI GKGCMC 1 cut(s) 131
BstUI CGCG 1 cut(s) 31
BstV2I GAAGAC 2 cut(s) 268, 313
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BstZI CGGCCG 1 cut(s) 703
Bsu15I ATCGAT 1 cut(s) 726
BsuRI GGCC 4 cut(s) 129, 422, 433, 705
BsuTUI ATCGAT 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 2 cut(s) 114, 548
BtsI GCAGTG 2 cut(s) 218, 552
BtsIMutI CAGTG 2 cut(s) 218, 552
Cac8I GCNNGC 2 cut(s) 231, 463
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 127, 128, 194, 745
ClaI ATCGAT 1 cut(s) 726
CpoI CGGWCCG 1 cut(s) 194
CseI GACGC 2 cut(s) 37, 97
Csp6I GTAC 1 cut(s) 412
CspAI ACCGGT 1 cut(s) 166
CspI CGGWCCG 1 cut(s) 194
CviAII CATG 5 cut(s) 205, 418, 478, 594, 857
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 5 cut(s) 20, 62, 561, 738, 864
DpnI GATC 3 cut(s) 270, 514, 771
DpnII GATC 3 cut(s) 268, 512, 769
DraI TTTAAA 1 cut(s) 720
EaeI YGGCCR 3 cut(s) 420, 431, 703
EagI CGGCCG 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EciI GGCGGA 2 cut(s) 41, 344
EclXI CGGCCG 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 194, 745
Eco52I CGGCCG 1 cut(s) 703
EcoO109I RGGNCCY 2 cut(s) 127, 745
EcoRII CCWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 5 cut(s) 208, 421, 481, 597, 860
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FatI CATG 5 cut(s) 204, 417, 477, 593, 856
Fnu4HI GCNGC 2 cut(s) 69, 218
FokI GGATG 2 cut(s) 101, 535
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 69, 218
FspBI CTAG 3 cut(s) 38, 140, 833
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 69, 218
HaeIII GGCC 4 cut(s) 129, 422, 433, 705
HapII CCGG 5 cut(s) 148, 167, 434, 468, 706
HgaI GACGC 2 cut(s) 37, 97
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 5 cut(s) 208, 421, 481, 597, 860
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 4 cut(s) 101, 287, 728, 811
HpaII CCGG 5 cut(s) 148, 167, 434, 468, 706
HphI GGTGA 2 cut(s) 466, 506
Hpy188I TCNGA 3 cut(s) 106, 774, 867
Hpy188III TCNNGA 8 cut(s) 38, 140, 266, 532, 617, 628, 740, 881
Hpy99I CGWCG 5 cut(s) 31, 85, 158, 202, 638
HpyAV CCTTC 6 cut(s) 35, 44, 244, 529, 682, 907
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 2 cut(s) 80, 636
HpyCH4V TGCA 5 cut(s) 229, 461, 508, 528, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 51, 217, 226
HpyF3I CTNAG 5 cut(s) 20, 62, 561, 738, 864
HpySE526I ACGT 2 cut(s) 80, 636
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 5 cut(s) 208, 421, 481, 597, 860
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 3 cut(s) 268, 512, 769
LmnI GCTCC 3 cut(s) 150, 470, 708
LweI GCATC 5 cut(s) 216, 480, 537, 596, 610
MaeI CTAG 3 cut(s) 38, 140, 833
MaeII ACGT 2 cut(s) 80, 636
MaeIII GTNAC 3 cut(s) 488, 543, 694
MalI GATC 3 cut(s) 270, 514, 771
MboI GATC 3 cut(s) 268, 512, 769
MboII GAAGA 7 cut(s) 268, 271, 288, 313, 582, 685, 799
MfeI CAATTG 1 cut(s) 517
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 2 cut(s) 131, 880
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 6 cut(s) 517, 646, 680, 715, 750, 800
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 2 cut(s) 95, 281
MnlI CCTC 9 cut(s) 29, 59, 147, 191, 253, 304, 310, 736, 873
Mox20I TGGCCA 1 cut(s) 422
MscI TGGCCA 1 cut(s) 422
MseI TTAA 3 cut(s) 719, 803, 922
MslI CAYNNNNRTG 3 cut(s) 476, 575, 592
Msp20I TGGCCA 1 cut(s) 422
MspI CCGG 5 cut(s) 148, 167, 434, 468, 706
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 4 cut(s) 30, 51, 217, 226
NdeII GATC 3 cut(s) 268, 512, 769
NlaIII CATG 5 cut(s) 208, 421, 481, 597, 860
NlaIV GGNNCC 2 cut(s) 128, 129
NmuCI GTSAC 2 cut(s) 488, 694
NspI RCATGY 2 cut(s) 481, 860
PciI ACATGT 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 708
PfeI GAWTC 2 cut(s) 728, 811
PflMI CCANNNNNTGG 1 cut(s) 429
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 2 cut(s) 70, 219
PleI GAGTC 2 cut(s) 95, 281
PpsI GAGTC 2 cut(s) 95, 281
PpuMI RGGWCCY 1 cut(s) 745
PscI ACATGT 1 cut(s) 856
PshAI GACNNNNGTC 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 745
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 2 cut(s) 128, 129
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 4 cut(s) 127, 128, 194, 745
PspPPI RGGWCCY 1 cut(s) 745
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 3 cut(s) 476, 575, 592
Rsr2I CGGWCCG 1 cut(s) 194
RsrII CGGWCCG 1 cut(s) 194
SaqAI TTAA 3 cut(s) 719, 803, 922
SatI GCNGC 2 cut(s) 69, 218
Sau3AI GATC 3 cut(s) 268, 512, 769
Sau96I GGNCC 4 cut(s) 127, 128, 194, 745
SchI GAGTC 2 cut(s) 95, 281
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 2 cut(s) 131, 880
SfaNI GCATC 5 cut(s) 216, 480, 537, 596, 610
SinI GGWCC 2 cut(s) 194, 745
SmiMI CAYNNNNRTG 3 cut(s) 476, 575, 592
SmlI CTYRAG 1 cut(s) 879
SmoI CTYRAG 1 cut(s) 879
Sse9I AATT 6 cut(s) 517, 646, 680, 715, 750, 800
SsiI CCGC 6 cut(s) 52, 68, 217, 246, 329, 598
SspI AATATT 1 cut(s) 895
SspMI CTAG 3 cut(s) 38, 140, 833
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 2 cut(s) 83, 639
TaqI TCGA 2 cut(s) 531, 726
TaqII GACCGA 1 cut(s) 182
TasI AATT 6 cut(s) 517, 646, 680, 715, 750, 800
TauI GCSGC 2 cut(s) 71, 220
TfiI GAWTC 2 cut(s) 728, 811
Tru1I TTAA 3 cut(s) 719, 803, 922
Tru9I TTAA 3 cut(s) 719, 803, 922
TscAI CASTG 2 cut(s) 218, 559
TseFI GTSAC 2 cut(s) 488, 694
Tsp45I GTSAC 2 cut(s) 488, 694
TspDTI ATGAA 1 cut(s) 582
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 218, 559
Van91I CCANNNNNTGG 1 cut(s) 429
VpaK11BI GGWCC 2 cut(s) 194, 745
XapI RAATTY 1 cut(s) 715
XbaI TCTAGA 2 cut(s) 37, 139
XceI RCATGY 2 cut(s) 481, 860
XspI CTAG 3 cut(s) 38, 140, 833
ZraI GACGTC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.