Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Forward (+)

23793025 .. 23794901

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30850.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACGATCCTGCCCTCCTTCCTCAGCCCCGTAACCCTATGGGGCCTCTACGTCCGCCGCTGCTTCGCCGCCTCCGGACTCTCCCAGCAGTCCATGAAGCTCGACGAACACACCACCCTTCACTTCTGGGGGCCCCACCAAACTATCCCTAACAACAAGCCCTGTCTGGTCCTCATCCACGGCTTCGGCCCTGCCGCCATGTGGCAGTGGCGGAAGCAGGTCCAGTTCTTCACTCCCAACTTCAACGTCTACGTCCCCGACCTTGTCTTCTTCGGCAGGTCCACCACCACGTCACCCGACAGAGCCGAAACGTTTCAGGCGGCCTCGGTGGCGAAGCTGCTGGAGAAGCTGGGCGTGGAGAGGTTCAGCGTGGTGGGGACCAGCTACGGTGGCTTCGTGGCGTACCACGTGGCCAGGATGTGGCCGGAGAGAGTTGAGAAGGTGGTGATTGCTAGCTCTGGGGTCAACATGAGAGGGAGAGATAGCGAGGCGTTGCTTAAGAGAGCTAACGTTGAGAAAATCGAGGACCTCATGCTTCCGGCCACCGCCGCGCAGCTCCGCAAGTTGGTCCGTCTAGCTATGTTTAAGAAAGTTGACATGATCCCTCAATTCTTCATGAACGACTTGATAGAGAAATTGTACTCGGATAAAAGGAAGGAGAAGATGGAACTTTTGAAGGGAGTGACTATTGGAAGAGATGACAAAGCAAACATCTCTCCTCTTGATGATAAGGTGTTAGCAACCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

250

Amino Acids

28.21

Weight (kDa)

9.58

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	52 - 161	9.6e-06	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	55 - 267	1.6e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	56 - 258	1.3e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	208, 267
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	551
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	9 cut(s)	55, 58, 69, 195, 211, 320, 546, 549, 559
AclI	AACGTT	2 cut(s)	311, 510
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	3 cut(s)	411, 422, 540
AcvI	CACGTG	1 cut(s)	409
AfaI	GTAC	2 cut(s)	404, 641
AfiI	CCNNNNNNNGG	3 cut(s)	201, 420, 565
AflII	CTTAAG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	244, 676
AjiI	CACGTC	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	413
AluBI	AGCT	8 cut(s)	100, 337, 349, 384, 456, 506, 556, 578
AluI	AGCT	8 cut(s)	100, 337, 349, 384, 456, 506, 556, 578
AlwI	GGATC	1 cut(s)	595
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	7 cut(s)	43, 131, 187, 321, 411, 422, 540
ApaI	GGGCCC	1 cut(s)	135
ApeKI	GCWGC	3 cut(s)	60, 337, 553
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	553
AsuHPI	GGTGA	2 cut(s)	285, 457
AsuNHI	GCTAGC	1 cut(s)	452
AvaII	GGWCC	6 cut(s)	169, 220, 279, 378, 526, 568
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	135
BbrPI	CACGTG	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	47, 324, 565
BccI	CCATC	1 cut(s)	658
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	415
BfaI	CTAG	2 cut(s)	453, 575
BfrI	CTTAAG	1 cut(s)	497
BfuAI	ACCTGC	2 cut(s)	208, 267
BglI	GCCNNNNNGGC	1 cut(s)	329
BisI	GCNGC	8 cut(s)	58, 61, 69, 195, 321, 338, 549, 554
BlsI	GCNGC	8 cut(s)	59, 62, 70, 196, 322, 339, 550, 555
Bme1390I	CCNGG	1 cut(s)	415
Bme18I	GGWCC	6 cut(s)	169, 220, 279, 378, 526, 568
BmgBI	CACGTC	1 cut(s)	291
BmiI	GGNNCC	5 cut(s)	44, 132, 133, 134, 379
BmrFI	CCNGG	1 cut(s)	415
BmtI	GCTAGC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	178, 324
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 420, 565
Bse1I	ACTGG	1 cut(s)	223
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	178, 324
BseGI	GGATG	2 cut(s)	174, 423
BseLI	CCNNNNNNNGG	3 cut(s)	201, 420, 565
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	708
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	47, 324, 565
BseYI	CCCAGC	2 cut(s)	84, 349
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	7 cut(s)	45, 133, 189, 323, 413, 424, 542
BsiSI	CCGG	3 cut(s)	75, 425, 539
BslFI	GGGAC	2 cut(s)	239, 391
BslI	CCNNNNNNNGG	3 cut(s)	201, 420, 565
BsmFI	GGGAC	2 cut(s)	239, 391
BsnI	GGCC	7 cut(s)	45, 133, 189, 323, 413, 424, 542
Bsp120I	GGGCCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	6, 600
BspACI	CCGC	9 cut(s)	55, 58, 69, 195, 211, 320, 546, 549, 559
BspANI	GGCC	7 cut(s)	45, 133, 189, 323, 413, 424, 542
BspCNI	CTCAG	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	5 cut(s)	44, 132, 133, 134, 379
BspMI	ACCTGC	2 cut(s)	208, 267
BspOI	GCTAGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	595
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	178, 324
BssMI	GATC	2 cut(s)	6, 600
Bst2UI	CCWGG	1 cut(s)	415
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	688
BstAFI	CTTAAG	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	2 cut(s)	174, 423
BstFNI	CGCG	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	2 cut(s)	9, 603
BstMBI	GATC	2 cut(s)	6, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 346, 390, 548
BstNI	CCWGG	1 cut(s)	415
BstSCI	CCNGG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	3 cut(s)	47, 324, 565
BstV2I	GAAGAC	1 cut(s)	259
BsuRI	GGCC	7 cut(s)	45, 133, 189, 323, 413, 424, 542
BtgI	CCRYGG	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	174, 423
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	2 cut(s)	208, 267
Cac8I	GCNNGC	1 cut(s)	454
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	403, 640
CviAII	CATG	6 cut(s)	94, 199, 469, 532, 598, 616
CviQI	GTAC	2 cut(s)	403, 640
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	8, 602
DpnII	GATC	2 cut(s)	6, 600
EaeI	YGGCCR	3 cut(s)	411, 422, 540
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
EciI	GGCGGA	2 cut(s)	44, 226
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	6 cut(s)	169, 220, 279, 378, 526, 568
Eco72I	CACGTG	1 cut(s)	409
EcoO109I	RGGNCCY	4 cut(s)	43, 131, 132, 526
EcoRII	CCWGG	1 cut(s)	413
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	6 cut(s)	97, 202, 472, 535, 601, 619
FaiI	YATR	8 cut(s)	40, 95, 200, 470, 533, 581, 599, 617
FaqI	GGGAC	2 cut(s)	239, 391
FatI	CATG	6 cut(s)	93, 198, 468, 531, 597, 615
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	8 cut(s)	58, 61, 69, 195, 321, 338, 549, 554
FokI	GGATG	2 cut(s)	161, 430
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	8 cut(s)	58, 61, 69, 195, 321, 338, 549, 554
FspBI	CTAG	2 cut(s)	453, 575
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	8 cut(s)	58, 61, 69, 195, 321, 338, 549, 554
GsaI	CCCAGC	2 cut(s)	88, 353
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	7 cut(s)	45, 133, 189, 323, 413, 424, 542
HapII	CCGG	3 cut(s)	75, 425, 539
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	6 cut(s)	97, 202, 472, 535, 601, 619
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HincII	GTYRAC	2 cut(s)	466, 595
HindII	GTYRAC	2 cut(s)	466, 595
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	3 cut(s)	75, 425, 539
HphI	GGTGA	2 cut(s)	285, 457
Hpy166II	GTNNAC	4 cut(s)	250, 282, 466, 595
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	3 cut(s)	75, 616, 722
Hpy8I	GTNNAC	4 cut(s)	250, 282, 466, 595
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	5 cut(s)	28, 128, 433, 649, 670
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	7 cut(s)	51, 246, 252, 290, 311, 408, 510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 346, 390, 548
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	7 cut(s)	51, 246, 252, 290, 311, 408, 510
Hsp92II	CATG	6 cut(s)	97, 202, 472, 535, 601, 619
HspAI	GCGC	1 cut(s)	551
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	6, 600
LmnI	GCTCC	1 cut(s)	561
Lsp1109I	GCAGC	3 cut(s)	47, 324, 565
MaeI	CTAG	2 cut(s)	453, 575
MaeII	ACGT	7 cut(s)	51, 246, 252, 290, 311, 408, 510
MaeIII	GTNAC	3 cut(s)	31, 291, 682
MalI	GATC	2 cut(s)	8, 602
MboI	GATC	2 cut(s)	6, 600
MboII	GAAGA	6 cut(s)	220, 259, 262, 604, 673, 705
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	2 cut(s)	608, 635
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	72
Mox20I	TGGCCA	1 cut(s)	413
MroI	TCCGGA	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	2 cut(s)	498, 585
Msp20I	TGGCCA	1 cut(s)	413
MspA1I	CMGCKG	1 cut(s)	60
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	3 cut(s)	75, 425, 539
MspR9I	CCNGG	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	415
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	329, 346, 390, 548
NdeII	GATC	2 cut(s)	6, 600
NheI	GCTAGC	1 cut(s)	452
NlaIII	CATG	6 cut(s)	97, 202, 472, 535, 601, 619
NlaIV	GGNNCC	5 cut(s)	44, 132, 133, 134, 379
NmuCI	GTSAC	2 cut(s)	291, 682
PagI	TCATGA	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	312
PflFI	GACNNNGTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	8 cut(s)	59, 62, 70, 196, 322, 339, 550, 555
PleI	GAGTC	1 cut(s)	72
PmaCI	CACGTG	1 cut(s)	409
PmlI	CACGTG	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	409
PpuMI	RGGWCCY	1 cut(s)	526
Psp1406I	AACGTT	2 cut(s)	311, 510
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	413
PspCI	CACGTG	1 cut(s)	409
PspFI	CCCAGC	2 cut(s)	84, 349
PspGI	CCWGG	1 cut(s)	413
PspN4I	GGNNCC	5 cut(s)	44, 132, 133, 134, 379
PspOMI	GGGCCC	1 cut(s)	131
PspPPI	RGGWCCY	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	404, 641
RsaNI	GTAC	2 cut(s)	403, 640
SaqAI	TTAA	2 cut(s)	498, 585
SatI	GCNGC	8 cut(s)	58, 61, 69, 195, 321, 338, 549, 554
Sau3AI	GATC	2 cut(s)	6, 600
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	415
SduI	GDGCHC	1 cut(s)	135
SinI	GGWCC	6 cut(s)	169, 220, 279, 378, 526, 568
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	2 cut(s)	608, 635
SsiI	CCGC	9 cut(s)	55, 58, 69, 195, 211, 320, 546, 549, 559
SspMI	CTAG	2 cut(s)	453, 575
StyD4I	CCNGG	1 cut(s)	413
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	7 cut(s)	54, 249, 255, 293, 314, 411, 513
TaqI	TCGA	2 cut(s)	102, 522
TasI	AATT	2 cut(s)	608, 635
TatI	WGTACW	1 cut(s)	639
TauI	GCSGC	5 cut(s)	60, 71, 197, 323, 551
Tru1I	TTAA	2 cut(s)	498, 585
Tru9I	TTAA	2 cut(s)	498, 585
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	2 cut(s)	291, 682
TseI	GCWGC	3 cut(s)	60, 337, 553
Tsp45I	GTSAC	2 cut(s)	291, 682
TspDTI	ATGAA	3 cut(s)	110, 604, 632
TspGWI	ACGGA	1 cut(s)	560
TspRI	CASTG	1 cut(s)	212
Tth111I	GACNNNGTC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	420
Vha464I	CTTAAG	1 cut(s)	497
VpaK11BI	GGWCC	6 cut(s)	169, 220, 279, 378, 526, 568
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	453, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.