Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Forward (+)

995982 .. 997283

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010362

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACGATTCTGCCCTCGTTCCTCAGCCCCGTAACCCTATGGGGCATCTACGTCCGCCGCTGCTTCGCCGCCTCCGGCCTCTCGCAGCAGTCTATGAAGATCGACGACGATGACGACACCACCCTCCACTTCTGGGGCCCCAACCCGAATTACCAAACTAACCCCAAACAAAACCGAAAGCCCTCCTTGGTCCTCATCCACGGCTTCGGACCTGCCGCCATGTGGCAGTGGCGGAAGCAGGTCCAGTTCTTCTGTCCCATATTCAACGTCTACGTCCCCGATCTGGTCTTCTTCGGCGGCTCGACCACCACGTCACCGAACCGGGCCGAAACGTTTCAGGCGGCCTCGGTGGCGAAGCTGCTGGAGAAGCTGGGCGTGGAGAGGTTCAGCGTCGTGGGGACCAGCTACGGCGGGTTCGTGGCGTACCACTTGGCGAGGACGTGGCCGGAGAGAGTCGAGAAGGTGGTGATCGCCAGCTCAGGGGTCAACATGAGACGGAGAGATAGCGAGGCATTGCTCAACAGAGCCGACGTCGACAAAATTGAGGACCTCATGCTTCCGGCCACCGCCGCCCAGCTCCACAAGTTGATGGCTCTCGCCATGTTCAAGAAACTTGACATGATCCCCCAATTTTTCATGAATGACTTCGTACAGAAATTGTACTCGGATAAAAGGAAGGAGAAGATGGAACTTTTGAAGGGAGTGACAATTGGAAGAGATGACAAAGCAAACATATCTCCTCTTCATGATAAGGAGGTTTTGATAGTGTGGGGAGAAAACGACCAGATATTTCCTCTGGAGATGGCTACTGAGCTGAAGCAACTTCTGGGGACGAAAGCGAGACTGGAGGTGATCAAGAACACATCACACATTCCCCAGATTGAAGATGCTGTACAGTTCAACAACATTGTACAAAACTTCTTGTGCAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

312

Amino Acids

35.36

Weight (kDa)

8.63

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	61 - 296	1.9e-26	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	63 - 301	5.8e-16	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AatII	GACGTC	1 cut(s)	534
Acc36I	ACCTGC	2 cut(s)	220, 229
AccI	GTMKAC	2 cut(s)	270, 534
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	1 cut(s)	616
AcoI	YGGCCR	2 cut(s)	443, 561
AcuI	CTGAAG	1 cut(s)	836
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	5 cut(s)	425, 651, 662, 894, 912
AfiI	CCNNNNNNNGG	4 cut(s)	133, 222, 283, 480
AgsI	TTSAA	5 cut(s)	265, 607, 697, 884, 901
AjiI	CACGTC	2 cut(s)	312, 441
AluBI	AGCT	6 cut(s)	358, 370, 405, 477, 577, 814
AluI	AGCT	6 cut(s)	358, 370, 405, 477, 577, 814
Alw26I	GTCTC	2 cut(s)	487, 835
AlwI	GGATC	1 cut(s)	616
AoxI	GGCC	6 cut(s)	76, 136, 324, 342, 443, 561
ApaI	GGGCCC	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	60, 85, 358
Asp700I	GAANNNNTTC	2 cut(s)	333, 644
AspS9I	GGNCC	8 cut(s)	136, 137, 190, 209, 241, 324, 399, 547
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	3 cut(s)	306, 478, 862
AvaII	GGWCC	5 cut(s)	190, 209, 241, 399, 547
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	876, 908
BbsI	GAAGAC	1 cut(s)	280
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	47, 97, 345
BccI	CCATC	3 cut(s)	583, 679, 796
BceAI	ACGGC	2 cut(s)	217, 424
BclI	TGATCA	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	2 cut(s)	487, 835
BfuAI	ACCTGC	2 cut(s)	220, 229
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	9 cut(s)	58, 61, 69, 86, 216, 298, 342, 359, 570
BlsI	GCNGC	9 cut(s)	59, 62, 70, 87, 217, 299, 343, 360, 571
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	5 cut(s)	190, 209, 241, 399, 547
BmgBI	CACGTC	2 cut(s)	312, 441
BmgT120I	GGNCC	8 cut(s)	136, 137, 190, 209, 241, 324, 399, 547
BmiI	GGNNCC	4 cut(s)	137, 138, 139, 400
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	54, 877
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	3 cut(s)	383, 818, 866
Bpu10I	CCTNAGC	2 cut(s)	23, 478
BpuMI	CCSGG	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	186, 199, 345
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 222, 283, 480
Bse1I	ACTGG	2 cut(s)	244, 849
Bse3DI	GCAATG	1 cut(s)	512
BseDI	CCNNGG	3 cut(s)	186, 199, 345
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	4 cut(s)	133, 222, 283, 480
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	3 cut(s)	37, 492, 801
BseNI	ACTGG	2 cut(s)	244, 849
BseRI	GAGGAG	1 cut(s)	729
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	47, 97, 345
BseYI	CCCAGC	2 cut(s)	370, 573
BshFI	GGCC	6 cut(s)	78, 138, 326, 344, 445, 563
BsiSI	CCGG	4 cut(s)	75, 322, 446, 560
BslFI	GGGAC	4 cut(s)	240, 260, 412, 844
BslI	CCNNNNNNNGG	4 cut(s)	133, 222, 283, 480
BsmAI	GTCTC	2 cut(s)	487, 835
BsmBI	CGTCTC	1 cut(s)	487
BsmFI	GGGAC	4 cut(s)	240, 260, 412, 844
BsnI	GGCC	6 cut(s)	78, 138, 326, 344, 445, 563
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp1407I	TGTACA	2 cut(s)	892, 910
Bsp143I	GATC	5 cut(s)	99, 280, 468, 621, 852
BspANI	GGCC	6 cut(s)	78, 138, 326, 344, 445, 563
BspCNI	CTCAG	3 cut(s)	36, 491, 802
BspHI	TCATGA	2 cut(s)	636, 745
BspLI	GGNNCC	4 cut(s)	137, 138, 139, 400
BspMI	ACCTGC	2 cut(s)	220, 229
BspPI	GGATC	1 cut(s)	616
BsrDI	GCAATG	1 cut(s)	512
BsrGI	TGTACA	2 cut(s)	892, 910
BsrI	ACTGG	2 cut(s)	244, 849
BssECI	CCNNGG	3 cut(s)	186, 199, 345
BssMI	GATC	5 cut(s)	99, 280, 468, 621, 852
BssNI	GRCGYC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	897
Bst6I	CTCTTC	2 cut(s)	709, 747
BstACI	GRCGYC	1 cut(s)	531
BstAUI	TGTACA	2 cut(s)	892, 910
BstC8I	GCNNGC	1 cut(s)	475
BstDEI	CTNAG	3 cut(s)	23, 478, 810
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	5 cut(s)	102, 283, 471, 624, 855
BstMAI	GTCTC	2 cut(s)	487, 835
BstMBI	GATC	5 cut(s)	99, 280, 468, 621, 852
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 367, 569
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	3 cut(s)	47, 97, 345
BstV2I	GAAGAC	1 cut(s)	280
BsuRI	GGCC	6 cut(s)	78, 138, 326, 344, 445, 563
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	2 cut(s)	312, 441
BtsCI	GGATG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	1 cut(s)	233
BveI	ACCTGC	2 cut(s)	220, 229
Cac8I	GCNNGC	1 cut(s)	475
CciI	TCATGA	2 cut(s)	636, 745
Cfr13I	GGNCC	8 cut(s)	136, 137, 190, 209, 241, 324, 399, 547
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	5 cut(s)	424, 650, 661, 893, 911
CviAII	CATG	7 cut(s)	220, 490, 553, 601, 619, 637, 746
CviQI	GTAC	5 cut(s)	424, 650, 661, 893, 911
DdeI	CTNAG	3 cut(s)	23, 478, 810
DpnI	GATC	5 cut(s)	101, 282, 470, 623, 854
DpnII	GATC	5 cut(s)	99, 280, 468, 621, 852
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	2 cut(s)	443, 561
Eam1104I	CTCTTC	2 cut(s)	709, 747
EarI	CTCTTC	2 cut(s)	709, 747
EciI	GGCGGA	2 cut(s)	44, 247
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	140
Eco47I	GGWCC	5 cut(s)	190, 209, 241, 399, 547
Eco57I	CTGAAG	1 cut(s)	836
EcoO109I	RGGNCCY	3 cut(s)	136, 137, 547
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	487
FaeI	CATG	7 cut(s)	223, 493, 556, 604, 622, 640, 749
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	4 cut(s)	240, 260, 412, 844
FatI	CATG	7 cut(s)	219, 489, 552, 600, 618, 636, 745
FauI	CCCGC	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	852
FblI	GTMKAC	2 cut(s)	270, 534
Fnu4HI	GCNGC	9 cut(s)	58, 61, 69, 86, 216, 298, 342, 359, 570
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	9 cut(s)	58, 61, 69, 86, 216, 298, 342, 359, 570
GluI	GCNGC	9 cut(s)	58, 61, 69, 86, 216, 298, 342, 359, 570
GsaI	CCCAGC	2 cut(s)	374, 577
GsuI	CTGGAG	3 cut(s)	383, 818, 866
HaeIII	GGCC	6 cut(s)	78, 138, 326, 344, 445, 563
HapII	CCGG	4 cut(s)	75, 322, 446, 560
HgaI	GACGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	7 cut(s)	223, 493, 556, 604, 622, 640, 749
HincII	GTYRAC	2 cut(s)	487, 535
HindII	GTYRAC	2 cut(s)	487, 535
HinfI	GANTC	2 cut(s)	7, 453
HpaII	CCGG	4 cut(s)	75, 322, 446, 560
HphI	GGTGA	3 cut(s)	306, 478, 862
Hpy166II	GTNNAC	3 cut(s)	271, 487, 535
Hpy188I	TCNGA	2 cut(s)	209, 667
Hpy188III	TCNNGA	6 cut(s)	457, 607, 637, 746, 797, 856
Hpy8I	GTNNAC	3 cut(s)	271, 487, 535
Hpy99I	CGWCG	5 cut(s)	107, 110, 395, 533, 536
HpyAV	CCTTC	3 cut(s)	454, 670, 691
HpyCH4III	ACNGT	1 cut(s)	897
HpyCH4IV	ACGT	7 cut(s)	51, 267, 273, 311, 332, 440, 531
HpyCH4V	TGCA	1 cut(s)	927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 367, 569
HpyF3I	CTNAG	3 cut(s)	23, 478, 810
HpySE526I	ACGT	7 cut(s)	51, 267, 273, 311, 332, 440, 531
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	7 cut(s)	223, 493, 556, 604, 622, 640, 749
Ksp22I	TGATCA	1 cut(s)	852
Kzo9I	GATC	5 cut(s)	99, 280, 468, 621, 852
LmnI	GCTCC	1 cut(s)	582
Lsp1109I	GCAGC	3 cut(s)	47, 97, 345
LweI	GCATC	2 cut(s)	54, 877
MaeII	ACGT	7 cut(s)	51, 267, 273, 311, 332, 440, 531
MaeIII	GTNAC	3 cut(s)	31, 312, 703
MalI	GATC	5 cut(s)	101, 282, 470, 623, 854
MboI	GATC	5 cut(s)	99, 280, 468, 621, 852
MboII	GAAGA	8 cut(s)	109, 241, 280, 283, 694, 726, 734, 896
MfeI	CAATTG	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	5 cut(s)	148, 540, 629, 656, 708
MlyI	GAGTC	1 cut(s)	462
MroXI	GAANNNNTTC	2 cut(s)	333, 644
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	4 cut(s)	75, 322, 446, 560
MspR9I	CCNGG	1 cut(s)	323
MunI	CAATTG	1 cut(s)	708
MwoI	GCNNNNNNNGC	3 cut(s)	350, 367, 569
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	5 cut(s)	99, 280, 468, 621, 852
NlaIII	CATG	7 cut(s)	223, 493, 556, 604, 622, 640, 749
NlaIV	GGNNCC	4 cut(s)	137, 138, 139, 400
NmuCI	GTSAC	2 cut(s)	312, 703
PagI	TCATGA	2 cut(s)	636, 745
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 308, 414
PdmI	GAANNNNTTC	2 cut(s)	333, 644
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	9 cut(s)	59, 62, 70, 87, 217, 299, 343, 360, 571
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PpuMI	RGGWCCY	1 cut(s)	547
Psp1406I	AACGTT	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	547
PspFI	CCCAGC	2 cut(s)	370, 573
PspN4I	GGNNCC	4 cut(s)	137, 138, 139, 400
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	8 cut(s)	136, 137, 190, 209, 241, 324, 399, 547
PspPPI	RGGWCCY	1 cut(s)	547
RsaI	GTAC	5 cut(s)	425, 651, 662, 894, 912
RsaNI	GTAC	5 cut(s)	424, 650, 661, 893, 911
SalI	GTCGAC	1 cut(s)	533
SatI	GCNGC	9 cut(s)	58, 61, 69, 86, 216, 298, 342, 359, 570
Sau3AI	GATC	5 cut(s)	99, 280, 468, 621, 852
Sau96I	GGNCC	8 cut(s)	136, 137, 190, 209, 241, 324, 399, 547
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	140
SfaNI	GCATC	2 cut(s)	54, 877
SinI	GGWCC	5 cut(s)	190, 209, 241, 399, 547
Sse9I	AATT	5 cut(s)	148, 540, 629, 656, 708
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	897
TaiI	ACGT	7 cut(s)	54, 270, 276, 314, 335, 443, 534
TaqI	TCGA	4 cut(s)	102, 302, 456, 534
TasI	AATT	5 cut(s)	148, 540, 629, 656, 708
TatI	WGTACW	3 cut(s)	660, 892, 910
TauI	GCSGC	6 cut(s)	60, 71, 218, 300, 344, 572
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	2 cut(s)	312, 703
TseI	GCWGC	3 cut(s)	60, 85, 358
Tsp45I	GTSAC	2 cut(s)	312, 703
TspDTI	ATGAA	4 cut(s)	110, 625, 653, 734
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	233
VpaK11BI	GGWCC	5 cut(s)	190, 209, 241, 399, 547
XmiI	GTMKAC	2 cut(s)	270, 534
XmnI	GAANNNNTTC	2 cut(s)	333, 644
ZraI	GACGTC	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.