Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Reverse (-)

68049255 .. 68051261

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG508500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGACGATTCTGCCCTCGTTCCTCAGCCCCGTAACCCTATGGGGCATCTACGTCCGCCGCTGCCTCGCCGCCTCCGGCCTCTCGCAGCAGTCTATGAAGATCGACGACGACACCACCCTCCACTTCTGGGGCCCCAACCCGAATTACCAAACAAACCCCAAACAAAACCAAAAGCCCTCCTTGGTCCTCATCCACGGCTTCGGACCTGCCGCCATGTGGCAGTGGCGGAAGCAGGTCCAGTTCTTCTCTCCCATATTCAACGTCTACGTCCCCGATCTGGTCTTCTTCGGCGGCTCGACCACCACGTCACCGAACCGGGCCGAAACGTTTCAGGCGGCCTCGGTGGCGAAGCTGCTCGAGAAGCTGGGCGTGGAGAGGTTCAGCGTGGTGGGGACCAGCTACGGCGGGTTCGTGGCGTATCACTTGGCCAGGACGTGGCCGGAGAGAGTCGAGAAGGTGGTGATCGCCAGCTCAGGGGTCAACATGAGACGGAGAGATAGCGAGGCATTGCTCAACAGAGCCGACGTCGACAAAATTGAGGACCTTATGCTTCCGGCCACCGCCGCGCAGCTCCACAAGTTGATGGCTCTCGCCATGTCCAAGAAACTTGACATGATCCCCCAATTTTTCATGAATGACTTCGTACAGAAATTGTACTCGGATAAAAGGAAGGAGAAGATGGAACTTTTGAAGGGAGTGACAATTGGAAGAGATGACAAAGCAAACATATCTCCTCTTCATGATAAGGAGGTTTTGATAGTGTGGGGAGAAAACGACCAGATATTTCCTCTGGAGATGGCTACTGAGCTGAAGCAGTATGTACTATTTTTCGATTTGTGTTTGATCAATTTAATTGCTTCGAGATGTATGTTATCATGTTACTTGTTATTTCGCTTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

300

Amino Acids

34.17

Weight (kDa)

8.94

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	59 - 273	5e-23	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	61 - 267	2.7e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AatII	GACGTC	1 cut(s)	528
Acc36I	ACCTGC	2 cut(s)	214, 223
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccI	GTMKAC	2 cut(s)	264, 528
AccII	CGCG	1 cut(s)	566
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	3 cut(s)	426, 437, 555
AcuI	CTGAAG	1 cut(s)	830
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	3 cut(s)	645, 656, 822
AfiI	CCNNNNNNNGG	5 cut(s)	127, 216, 277, 435, 474
AgsI	TTSAA	2 cut(s)	259, 691
AjiI	CACGTC	2 cut(s)	306, 435
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	6 cut(s)	352, 364, 399, 471, 571, 808
AluI	AGCT	6 cut(s)	352, 364, 399, 471, 571, 808
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	610
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	7 cut(s)	76, 130, 318, 336, 426, 437, 555
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	60, 85, 352, 568
Asp700I	GAANNNNTTC	2 cut(s)	327, 638
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	300, 472
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	5 cut(s)	184, 203, 235, 393, 541
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	47, 97, 339, 580
BccI	CCATC	3 cut(s)	577, 673, 790
BceAI	ACGGC	2 cut(s)	211, 418
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	843
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	481
BfuAI	ACCTGC	2 cut(s)	214, 223
BglI	GCCNNNNNGGC	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	317, 430
Bme18I	GGWCC	5 cut(s)	184, 203, 235, 393, 541
BmeT110I	CYCGRG	1 cut(s)	356
BmgBI	CACGTC	2 cut(s)	306, 435
BmgT120I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
BmiI	GGNNCC	4 cut(s)	131, 132, 133, 394
BmrFI	CCNGG	2 cut(s)	317, 430
BmsI	GCATC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	812
Bpu10I	CCTNAGC	2 cut(s)	23, 472
BpuMI	CCSGG	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	180, 193, 339
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 216, 277, 435, 474
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	506
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	180, 193, 339
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	5 cut(s)	127, 216, 277, 435, 474
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	3 cut(s)	37, 486, 795
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	47, 97, 339, 580
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	7 cut(s)	78, 132, 320, 338, 428, 439, 557
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	4 cut(s)	75, 316, 440, 554
BslFI	GGGAC	2 cut(s)	254, 406
BslI	CCNNNNNNNGG	5 cut(s)	127, 216, 277, 435, 474
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	254, 406
BsnI	GGCC	7 cut(s)	78, 132, 320, 338, 428, 439, 557
BsoBI	CYCGRG	1 cut(s)	356
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	5 cut(s)	99, 274, 462, 615, 843
BspANI	GGCC	7 cut(s)	78, 132, 320, 338, 428, 439, 557
BspCNI	CTCAG	3 cut(s)	36, 485, 796
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	2 cut(s)	630, 739
BspLI	GGNNCC	4 cut(s)	131, 132, 133, 394
BspMI	ACCTGC	2 cut(s)	214, 223
BspPI	GGATC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	180, 193, 339
BssMI	GATC	5 cut(s)	99, 274, 462, 615, 843
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	430
Bst6I	CTCTTC	2 cut(s)	703, 741
BstACI	GRCGYC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	3 cut(s)	23, 472, 804
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	102, 277, 465, 618, 846
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	5 cut(s)	99, 274, 462, 615, 843
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 361, 563
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	315, 428
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	4 cut(s)	47, 97, 339, 580
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	7 cut(s)	78, 132, 320, 338, 428, 439, 557
BtgI	CCRYGG	1 cut(s)	193
BtrI	CACGTC	2 cut(s)	306, 435
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
BveI	ACCTGC	2 cut(s)	214, 223
Cac8I	GCNNGC	1 cut(s)	469
CciI	TCATGA	2 cut(s)	630, 739
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
Csp6I	GTAC	3 cut(s)	644, 655, 821
CviAII	CATG	7 cut(s)	214, 484, 595, 613, 631, 740, 876
CviQI	GTAC	3 cut(s)	644, 655, 821
DdeI	CTNAG	3 cut(s)	23, 472, 804
DpnI	GATC	5 cut(s)	101, 276, 464, 617, 845
DpnII	GATC	5 cut(s)	99, 274, 462, 615, 843
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	3 cut(s)	426, 437, 555
Eam1104I	CTCTTC	2 cut(s)	703, 741
EarI	CTCTTC	2 cut(s)	703, 741
EciI	GGCGGA	2 cut(s)	44, 241
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	5 cut(s)	184, 203, 235, 393, 541
Eco57I	CTGAAG	1 cut(s)	830
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	3 cut(s)	130, 131, 541
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	7 cut(s)	217, 487, 598, 616, 634, 743, 879
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	2 cut(s)	254, 406
FatI	CATG	7 cut(s)	213, 483, 594, 612, 630, 739, 875
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	1 cut(s)	843
FblI	GTMKAC	2 cut(s)	264, 528
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	567
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	7 cut(s)	78, 132, 320, 338, 428, 439, 557
HapII	CCGG	4 cut(s)	75, 316, 440, 554
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	7 cut(s)	217, 487, 598, 616, 634, 743, 879
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	2 cut(s)	481, 529
HindII	GTYRAC	2 cut(s)	481, 529
HinfI	GANTC	2 cut(s)	7, 447
HpaII	CCGG	4 cut(s)	75, 316, 440, 554
HphI	GGTGA	2 cut(s)	300, 472
Hpy166II	GTNNAC	3 cut(s)	265, 481, 529
Hpy188I	TCNGA	2 cut(s)	203, 661
Hpy188III	TCNNGA	6 cut(s)	358, 451, 631, 740, 791, 861
Hpy8I	GTNNAC	3 cut(s)	265, 481, 529
Hpy99I	CGWCG	4 cut(s)	107, 110, 527, 530
HpyAV	CCTTC	3 cut(s)	448, 664, 685
HpyCH4IV	ACGT	7 cut(s)	51, 261, 267, 305, 326, 434, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 361, 563
HpyF3I	CTNAG	3 cut(s)	23, 472, 804
HpySE526I	ACGT	7 cut(s)	51, 261, 267, 305, 326, 434, 525
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	7 cut(s)	217, 487, 598, 616, 634, 743, 879
HspAI	GCGC	1 cut(s)	566
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	5 cut(s)	99, 274, 462, 615, 843
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	4 cut(s)	47, 97, 339, 580
LweI	GCATC	1 cut(s)	54
MaeII	ACGT	7 cut(s)	51, 261, 267, 305, 326, 434, 525
MaeIII	GTNAC	4 cut(s)	31, 306, 697, 878
MalI	GATC	5 cut(s)	101, 276, 464, 617, 845
MboI	GATC	5 cut(s)	99, 274, 462, 615, 843
MboII	GAAGA	7 cut(s)	109, 235, 274, 277, 688, 720, 728
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	428
MluCI	AATT	7 cut(s)	142, 534, 623, 650, 702, 847, 852
MluNI	TGGCCA	1 cut(s)	428
MlyI	GAGTC	1 cut(s)	456
Mox20I	TGGCCA	1 cut(s)	428
MroXI	GAANNNNTTC	2 cut(s)	327, 638
MscI	TGGCCA	1 cut(s)	428
MseI	TTAA	1 cut(s)	851
Msp20I	TGGCCA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	4 cut(s)	75, 316, 440, 554
MspR9I	CCNGG	2 cut(s)	317, 430
MunI	CAATTG	1 cut(s)	702
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	344, 361, 563
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	5 cut(s)	99, 274, 462, 615, 843
NlaIII	CATG	7 cut(s)	217, 487, 598, 616, 634, 743, 879
NlaIV	GGNNCC	4 cut(s)	131, 132, 133, 394
NmuCI	GTSAC	2 cut(s)	306, 697
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	2 cut(s)	630, 739
PcsI	WCGNNNNNNNCGW	2 cut(s)	302, 408
PdmI	GAANNNNTTC	2 cut(s)	327, 638
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	435
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	541
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	131, 132, 133, 394
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
PspPPI	RGGWCCY	1 cut(s)	541
RsaI	GTAC	3 cut(s)	645, 656, 822
RsaNI	GTAC	3 cut(s)	644, 655, 821
SalI	GTCGAC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	851
Sau3AI	GATC	5 cut(s)	99, 274, 462, 615, 843
Sau96I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	317, 430
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	5 cut(s)	184, 203, 235, 393, 541
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	7 cut(s)	142, 534, 623, 650, 702, 847, 852
StyD4I	CCNGG	2 cut(s)	315, 428
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	7 cut(s)	54, 264, 270, 308, 329, 437, 528
TaqI	TCGA	7 cut(s)	102, 296, 357, 450, 528, 831, 860
TasI	AATT	7 cut(s)	142, 534, 623, 650, 702, 847, 852
TatI	WGTACW	2 cut(s)	654, 820
TauI	GCSGC	6 cut(s)	60, 71, 212, 294, 338, 566
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	306, 697
TseI	GCWGC	4 cut(s)	60, 85, 352, 568
Tsp45I	GTSAC	2 cut(s)	306, 697
TspDTI	ATGAA	4 cut(s)	110, 619, 647, 728
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	5 cut(s)	184, 203, 235, 393, 541
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	264, 528
XmnI	GAANNNNTTC	2 cut(s)	327, 638
ZraI	GACGTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.