Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Reverse (-)

67424333 .. 67425652

Gene Structure 1320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACGATTCTGCCCTCGTTCCTCAGCCCCGTAACCCTATGGGCCATCTACGTCCGCCGCTGCTTCGCCGCCTCCGGCCTCTCGCAGCAGTCTATGAAGATCGACGACGACACCACCCTCCACTTCTGGGGCCCCAACCCGAATTACCAAACTAGCCCCAAACAAAACCAAAAGCCCTCCTTGTGGCGGAAGCAGGTCCAGTTCTTCTGCCCCATATTCAACGTCTACGTCCCCGATCTGGTCTTCTTCGGCGGCTCGACCACCACGTCACCGAACCGGGCCGAAACGTTTCAGGCGGCCTCGGTGGCGAAGCTGCTGGAGAAGCTGGGCGTGGAGAGGTTCAGCGTGGTGGGGACCAGCTACGGCGGGTTCGTGGCGCACCACTTGGCCAGGACGTGGCCGGAGAGAGTCGAGAAGGTGGTGATCGCCAGCTCAGGGGTCAACATGAGACGGAGAGATAGCGAGGCATTGCTCAACAGAGCCGACGTCGACAAAATTGAGGACCTCATGCTTCCGGCCACCGCCGCGCAGCTCCACAAGTTGATGGCTCTCGCCATGTTCAAGAAACTTGACATGATCCCCCAATTTTTCATGAATGACTTCGTACAGAAATTGTACTCGGATAAAAGGAAGGAGAAGATGGAACTTTTGAAGGGAGTGACAATTGGAAGAGATGACAAAGCAAACATATCTCCTCTTCATGATAAGGAGGTTTTGATAGTGTGGGGAGAAAACGACCAGATATTTCCTCTGGAGATGGCTACTGAGCTGAAGCAGCTTCTGGGGACGAAAGCGAGACTGGAGGTGATCAAGAACACATCACACATTCCGCAGATTGAAGATGCTGTACAGTTCAACAACATTGTACAGAGCTTCTTGTGCAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

296

Amino Acids

33.63

Weight (kDa)

8.85

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	62 - 281	1.2e-23	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	73 - 286	1.2e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	265
AatII	GACGTC	1 cut(s)	489
Acc36I	ACCTGC	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	396
AccI	GTMKAC	2 cut(s)	225, 489
AccII	CGCG	1 cut(s)	527
AclI	AACGTT	1 cut(s)	287
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	3 cut(s)	387, 398, 516
AcuI	CTGAAG	1 cut(s)	791
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	4 cut(s)	606, 617, 849, 867
AfiI	CCNNNNNNNGG	6 cut(s)	127, 183, 186, 238, 396, 435
AgsI	TTSAA	5 cut(s)	220, 562, 652, 839, 856
AjiI	CACGTC	2 cut(s)	267, 396
AjnI	CCWGG	1 cut(s)	389
AluBI	AGCT	8 cut(s)	313, 325, 360, 432, 532, 769, 778, 873
AluI	AGCT	8 cut(s)	313, 325, 360, 432, 532, 769, 778, 873
Alw26I	GTCTC	2 cut(s)	442, 790
AlwI	GGATC	1 cut(s)	571
AlwNI	CAGNNNCTG	1 cut(s)	781
AoxI	GGCC	8 cut(s)	42, 76, 130, 279, 297, 387, 398, 516
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	5 cut(s)	60, 85, 313, 529, 775
Asp700I	GAANNNNTTC	2 cut(s)	288, 599
AspLEI	GCGC	2 cut(s)	379, 529
AspS9I	GGNCC	7 cut(s)	42, 130, 131, 196, 279, 354, 502
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	261, 433, 817
AvaII	GGWCC	3 cut(s)	196, 354, 502
BaeGI	GKGCMC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	831, 863
BbsI	GAAGAC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	5 cut(s)	47, 97, 300, 541, 787
BccI	CCATC	4 cut(s)	53, 538, 634, 751
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	391
BclI	TGATCA	1 cut(s)	807
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	442, 790
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	305
Bme1390I	CCNGG	2 cut(s)	278, 391
Bme18I	GGWCC	3 cut(s)	196, 354, 502
BmgBI	CACGTC	2 cut(s)	267, 396
BmgT120I	GGNCC	7 cut(s)	42, 130, 131, 196, 279, 354, 502
BmiI	GGNNCC	4 cut(s)	131, 132, 133, 355
BmrFI	CCNGG	2 cut(s)	278, 391
BmsI	GCATC	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	3 cut(s)	338, 773, 821
Bpu10I	CCTNAGC	2 cut(s)	23, 433
BpuMI	CCSGG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 183, 186, 238, 396, 435
Bse1I	ACTGG	2 cut(s)	199, 804
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	300
BseLI	CCNNNNNNNGG	6 cut(s)	127, 183, 186, 238, 396, 435
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	37, 447, 756
BseNI	ACTGG	2 cut(s)	199, 804
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	5 cut(s)	47, 97, 300, 541, 787
BseYI	CCCAGC	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	8 cut(s)	44, 78, 132, 281, 299, 389, 400, 518
BsiSI	CCGG	4 cut(s)	75, 277, 401, 515
BslFI	GGGAC	3 cut(s)	215, 367, 799
BslI	CCNNNNNNNGG	6 cut(s)	127, 183, 186, 238, 396, 435
BsmAI	GTCTC	2 cut(s)	442, 790
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	3 cut(s)	215, 367, 799
BsnI	GGCC	8 cut(s)	44, 78, 132, 281, 299, 389, 400, 518
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	2 cut(s)	847, 865
Bsp143I	GATC	5 cut(s)	99, 235, 423, 576, 807
BspANI	GGCC	8 cut(s)	44, 78, 132, 281, 299, 389, 400, 518
BspCNI	CTCAG	3 cut(s)	36, 446, 757
BspFNI	CGCG	1 cut(s)	527
BspHI	TCATGA	2 cut(s)	591, 700
BspLI	GGNNCC	4 cut(s)	131, 132, 133, 355
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	571
BsrDI	GCAATG	1 cut(s)	467
BsrGI	TGTACA	2 cut(s)	847, 865
BsrI	ACTGG	2 cut(s)	199, 804
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	5 cut(s)	99, 235, 423, 576, 807
BssNI	GRCGYC	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	852
Bst6I	CTCTTC	2 cut(s)	664, 702
BstACI	GRCGYC	1 cut(s)	486
BstAUI	TGTACA	2 cut(s)	847, 865
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	23, 433, 765
BstFNI	CGCG	1 cut(s)	527
BstHHI	GCGC	2 cut(s)	379, 529
BstKTI	GATC	5 cut(s)	102, 238, 426, 579, 810
BstMAI	GTCTC	2 cut(s)	442, 790
BstMBI	GATC	5 cut(s)	99, 235, 423, 576, 807
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 322, 524, 775, 879
BstNI	CCWGG	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	276, 389
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	5 cut(s)	47, 97, 300, 541, 787
BstV2I	GAAGAC	1 cut(s)	235
BsuRI	GGCC	8 cut(s)	44, 78, 132, 281, 299, 389, 400, 518
BtrI	CACGTC	2 cut(s)	267, 396
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	781
CciI	TCATGA	2 cut(s)	591, 700
CfoI	GCGC	2 cut(s)	379, 529
Cfr13I	GGNCC	7 cut(s)	42, 130, 131, 196, 279, 354, 502
Csp6I	GTAC	4 cut(s)	605, 616, 848, 866
CviAII	CATG	6 cut(s)	445, 508, 556, 574, 592, 701
CviQI	GTAC	4 cut(s)	605, 616, 848, 866
DdeI	CTNAG	3 cut(s)	23, 433, 765
DpnI	GATC	5 cut(s)	101, 237, 425, 578, 809
DpnII	GATC	5 cut(s)	99, 235, 423, 576, 807
DrdI	GACNNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	3 cut(s)	387, 398, 516
Eam1104I	CTCTTC	2 cut(s)	664, 702
EarI	CTCTTC	2 cut(s)	664, 702
EciI	GGCGGA	2 cut(s)	44, 202
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	3 cut(s)	196, 354, 502
Eco57I	CTGAAG	1 cut(s)	791
EcoO109I	RGGNCCY	3 cut(s)	130, 131, 502
EcoRII	CCWGG	1 cut(s)	389
EcoT38I	GRGCYC	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	6 cut(s)	448, 511, 559, 577, 595, 704
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	3 cut(s)	215, 367, 799
FatI	CATG	6 cut(s)	444, 507, 555, 573, 591, 700
FauI	CCCGC	1 cut(s)	359
FbaI	TGATCA	1 cut(s)	807
FblI	GTMKAC	2 cut(s)	225, 489
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	2 cut(s)	378, 528
GsaI	CCCAGC	1 cut(s)	329
GsuI	CTGGAG	3 cut(s)	338, 773, 821
HaeIII	GGCC	8 cut(s)	44, 78, 132, 281, 299, 389, 400, 518
HapII	CCGG	4 cut(s)	75, 277, 401, 515
HhaI	GCGC	2 cut(s)	379, 529
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	6 cut(s)	448, 511, 559, 577, 595, 704
Hin6I	GCGC	2 cut(s)	377, 527
HinP1I	GCGC	2 cut(s)	377, 527
HincII	GTYRAC	2 cut(s)	442, 490
HindII	GTYRAC	2 cut(s)	442, 490
HinfI	GANTC	2 cut(s)	7, 408
HpaII	CCGG	4 cut(s)	75, 277, 401, 515
HphI	GGTGA	3 cut(s)	261, 433, 817
Hpy166II	GTNNAC	3 cut(s)	226, 442, 490
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	6 cut(s)	412, 562, 592, 701, 752, 811
Hpy8I	GTNNAC	3 cut(s)	226, 442, 490
Hpy99I	CGWCG	4 cut(s)	107, 110, 488, 491
HpyAV	CCTTC	3 cut(s)	409, 625, 646
HpyCH4III	ACNGT	1 cut(s)	852
HpyCH4IV	ACGT	7 cut(s)	51, 222, 228, 266, 287, 395, 486
HpyCH4V	TGCA	1 cut(s)	882
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 322, 524, 775, 879
HpyF3I	CTNAG	3 cut(s)	23, 433, 765
HpySE526I	ACGT	7 cut(s)	51, 222, 228, 266, 287, 395, 486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	6 cut(s)	448, 511, 559, 577, 595, 704
HspAI	GCGC	2 cut(s)	377, 527
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	5 cut(s)	99, 235, 423, 576, 807
LmnI	GCTCC	1 cut(s)	537
Lsp1109I	GCAGC	5 cut(s)	47, 97, 300, 541, 787
LweI	GCATC	1 cut(s)	832
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	7 cut(s)	51, 222, 228, 266, 287, 395, 486
MaeIII	GTNAC	3 cut(s)	31, 267, 658
MalI	GATC	5 cut(s)	101, 237, 425, 578, 809
MboI	GATC	5 cut(s)	99, 235, 423, 576, 807
MboII	GAAGA	8 cut(s)	109, 196, 235, 238, 649, 681, 689, 851
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	5 cut(s)	142, 495, 584, 611, 663
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	389
MroXI	GAANNNNTTC	2 cut(s)	288, 599
MscI	TGGCCA	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	4 cut(s)	75, 277, 401, 515
MspR9I	CCNGG	2 cut(s)	278, 391
MunI	CAATTG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	391
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	5 cut(s)	305, 322, 524, 775, 879
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	5 cut(s)	99, 235, 423, 576, 807
NlaIII	CATG	6 cut(s)	448, 511, 559, 577, 595, 704
NlaIV	GGNNCC	4 cut(s)	131, 132, 133, 355
NmuCI	GTSAC	2 cut(s)	267, 658
PagI	TCATGA	2 cut(s)	591, 700
PcsI	WCGNNNNNNNCGW	2 cut(s)	263, 369
PdmI	GAANNNNTTC	2 cut(s)	288, 599
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	396
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PpuMI	RGGWCCY	1 cut(s)	502
Psp1406I	AACGTT	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	389
PspN4I	GGNNCC	4 cut(s)	131, 132, 133, 355
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	7 cut(s)	42, 130, 131, 196, 279, 354, 502
PspPPI	RGGWCCY	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	781
RsaI	GTAC	4 cut(s)	606, 617, 849, 867
RsaNI	GTAC	4 cut(s)	605, 616, 848, 866
SalI	GTCGAC	1 cut(s)	488
Sau3AI	GATC	5 cut(s)	99, 235, 423, 576, 807
Sau96I	GGNCC	7 cut(s)	42, 130, 131, 196, 279, 354, 502
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	2 cut(s)	278, 391
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	832
SinI	GGWCC	3 cut(s)	196, 354, 502
Sse9I	AATT	5 cut(s)	142, 495, 584, 611, 663
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	276, 389
TaaI	ACNGT	1 cut(s)	852
TaiI	ACGT	7 cut(s)	54, 225, 231, 269, 290, 398, 489
TaqI	TCGA	4 cut(s)	102, 257, 411, 489
TasI	AATT	5 cut(s)	142, 495, 584, 611, 663
TatI	WGTACW	3 cut(s)	615, 847, 865
TauI	GCSGC	5 cut(s)	60, 71, 255, 299, 527
TfiI	GAWTC	1 cut(s)	7
TseFI	GTSAC	2 cut(s)	267, 658
TseI	GCWGC	5 cut(s)	60, 85, 313, 529, 775
Tsp45I	GTSAC	2 cut(s)	267, 658
TspDTI	ATGAA	4 cut(s)	110, 580, 608, 689
TspGWI	ACGGA	1 cut(s)	466
Van91I	CCANNNNNTGG	1 cut(s)	396
VpaK11BI	GGWCC	3 cut(s)	196, 354, 502
XmiI	GTMKAC	2 cut(s)	225, 489
XmnI	GAANNNNTTC	2 cut(s)	288, 599
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.