Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Forward (+)

3314297 .. 3316594

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1048600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGTTACCCTTCTTTCTCAGCCCCGTCTCCTTATACGCCATCTATGTCCGCCGTTGCTTTGCAGGCTCCGGCCTCTCCCAGCAAACCCTACAACTCGACAATGATCAAACCACACTCCACTTCTGGGGTCCCAACCCTAAACTTTCTAACCAAACCCAAAACCCCGAAAAACCTTCACTCGTTCTAATCCACGGCTTTGGCCCCGCCGCCATGTGGCAGTGGCGGAACCAAGTCCAGTTCTTCTCCCCCCACTTCAACGTCTACGTCCCCAACCTTGTCTTCTTCGGGAATTCCACCACCGGATCCCCAGAGCGAACCGAGGTCTTTCAGGCATCCTCGGTCGCCAAGATGATGGAGAAGGTCGGCGTGGAGAGATTTAGTGTGATGGGGACGAGCTACGGCGGCTTTGTGGCGTACCACTTGGCGAGGATGTGGCCGGAGAGAGTGGAGAAGGCGGTGATTGCCAGCTCTGGGGTTAACATGAGGAGAGGAGATCACGAGGCGCTCTTGAAGAGGGCAAAGTTGGAAAAGATTGAAGATCTCATGTTGCCTTCCACGGCGGCTCAGCTCAACAAGTTACTCACCCTCGCCATGGCCCGGCGGCTCGACATCATTCCCGACTTTTTCTTAAGCGACATAATACATAAATTGTACTCTGATAAGAGAAAAGAAAAGATGGAGCTTCTAAAGGGACTCACTCTTGGACGAGAAGACACACCAAACATATCTCCTCTTCCCAACAAGGAGGTGTTGATAGTGTGGGGAGAGAAAGACCAGATCTTTCCTTTGGAGATGGCTACTGAACTCAACGAGCTTCTTGGACCGAAGACGAAATTGGAAGTGATAAAGAACACAGCGCATGTACCCCAAGTTGAAAATCCCGCTCAATTTAACAACATTGTAAAAAGTTTCTTGTGTGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

309

Amino Acids

34.85

Weight (kDa)

8.73

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	57 - 289	6.1e-06	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	58 - 294	1.7e-23	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	60 - 298	6.5e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	9 cut(s)	49, 204, 207, 223, 402, 455, 560, 601, 882
AclWI	GGATC	2 cut(s)	297, 310
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	3 cut(s)	416, 653, 864
AfiI	CCNNNNNNNGG	5 cut(s)	124, 213, 471, 592, 597
AflII	CTTAAG	1 cut(s)	628
AgsI	TTSAA	4 cut(s)	256, 511, 536, 875
AjuI	GAANNNNNNNTTGG	4 cut(s)	263, 295, 818, 850
AluBI	AGCT	5 cut(s)	396, 468, 568, 682, 814
AluI	AGCT	5 cut(s)	396, 468, 568, 682, 814
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	2 cut(s)	297, 310
AoxI	GGCC	4 cut(s)	70, 199, 434, 594
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	2 cut(s)	505, 859
AspS9I	GGNCC	4 cut(s)	128, 200, 595, 821
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	469, 574
AvaII	GGWCC	2 cut(s)	128, 821
BamHI	GGATCC	1 cut(s)	302
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	271, 717, 833
BccI	CCATC	5 cut(s)	47, 346, 379, 670, 787
BceAI	ACGGC	4 cut(s)	36, 208, 415, 573
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	506
BfrI	CTTAAG	1 cut(s)	628
BglII	AGATCT	2 cut(s)	538, 777
BisI	GCNGC	4 cut(s)	207, 403, 561, 602
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	4 cut(s)	208, 404, 562, 603
Bme1390I	CCNGG	1 cut(s)	598
Bme18I	GGWCC	2 cut(s)	128, 821
BmgT120I	GGNCC	4 cut(s)	128, 200, 595, 821
BmiI	GGNNCC	6 cut(s)	67, 129, 130, 202, 227, 304
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	1 cut(s)	341
BpiI	GAAGAC	3 cut(s)	271, 717, 833
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	598
BsaJI	CCNNGG	5 cut(s)	190, 318, 336, 555, 591
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	5 cut(s)	124, 213, 471, 592, 597
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	5 cut(s)	190, 318, 336, 555, 591
BseGI	GGATG	2 cut(s)	332, 435
BseLI	CCNNNNNNNGG	5 cut(s)	124, 213, 471, 592, 597
BseMII	CTCAG	2 cut(s)	31, 578
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	3 cut(s)	499, 504, 720
BseYI	CCCAGC	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	4 cut(s)	72, 201, 436, 596
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	69, 300, 437, 598
BslFI	GGGAC	4 cut(s)	114, 251, 403, 705
BslI	CCNNNNNNNGG	5 cut(s)	124, 213, 471, 592, 597
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	4 cut(s)	114, 251, 403, 705
BsnI	GGCC	4 cut(s)	72, 201, 436, 596
Bsp143I	GATC	5 cut(s)	103, 302, 493, 538, 777
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	9 cut(s)	49, 204, 207, 223, 402, 455, 560, 601, 882
BspANI	GGCC	4 cut(s)	72, 201, 436, 596
BspCNI	CTCAG	2 cut(s)	30, 577
BspLI	GGNNCC	6 cut(s)	67, 129, 130, 202, 227, 304
BspPI	GGATC	2 cut(s)	297, 310
BspTI	CTTAAG	1 cut(s)	628
BsrBI	CCGCTC	1 cut(s)	884
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	5 cut(s)	190, 318, 336, 555, 591
BssMI	GATC	5 cut(s)	103, 302, 493, 538, 777
BssSI	CACGAG	1 cut(s)	497
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	506, 738
BstAFI	CTTAAG	1 cut(s)	628
BstC8I	GCNNGC	2 cut(s)	64, 466
BstDEI	CTNAG	2 cut(s)	17, 564
BstDSI	CCRYGG	3 cut(s)	190, 555, 591
BstF5I	GGATG	2 cut(s)	332, 435
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	505, 859
BstKTI	GATC	5 cut(s)	106, 305, 496, 541, 780
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	5 cut(s)	103, 302, 493, 538, 777
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 402, 461
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	596
BstV2I	GAAGAC	3 cut(s)	271, 717, 833
BstX2I	RGATCY	3 cut(s)	302, 538, 777
BstXI	CCANNNNNNTGG	2 cut(s)	197, 352
BstYI	RGATCY	3 cut(s)	302, 538, 777
BsuRI	GGCC	4 cut(s)	72, 201, 436, 596
BtgI	CCRYGG	3 cut(s)	190, 555, 591
BtsCI	GGATG	2 cut(s)	332, 435
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	2 cut(s)	64, 466
CfoI	GCGC	2 cut(s)	505, 859
Cfr13I	GGNCC	4 cut(s)	128, 200, 595, 821
Csp6I	GTAC	3 cut(s)	415, 652, 863
CviAII	CATG	5 cut(s)	211, 481, 544, 592, 860
CviQI	GTAC	3 cut(s)	415, 652, 863
DdeI	CTNAG	2 cut(s)	17, 564
DpnI	GATC	5 cut(s)	105, 304, 495, 540, 779
DpnII	GATC	5 cut(s)	103, 302, 493, 538, 777
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	2 cut(s)	506, 738
EarI	CTCTTC	2 cut(s)	506, 738
EciI	GGCGGA	2 cut(s)	38, 238
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	2 cut(s)	128, 821
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	5 cut(s)	214, 484, 547, 595, 863
FaqI	GGGAC	4 cut(s)	114, 251, 403, 705
FatI	CATG	5 cut(s)	210, 480, 543, 591, 859
FauI	CCCGC	2 cut(s)	211, 889
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	207, 403, 561, 602
FokI	GGATG	2 cut(s)	319, 442
Fsp4HI	GCNGC	4 cut(s)	207, 403, 561, 602
GlaI	GCGC	2 cut(s)	504, 858
GluI	GCNGC	4 cut(s)	207, 403, 561, 602
GsaI	CCCAGC	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	506
HaeIII	GGCC	4 cut(s)	72, 201, 436, 596
HapII	CCGG	4 cut(s)	69, 300, 437, 598
HhaI	GCGC	2 cut(s)	505, 859
Hin1II	CATG	5 cut(s)	214, 484, 547, 595, 863
Hin6I	GCGC	2 cut(s)	503, 857
HinP1I	GCGC	2 cut(s)	503, 857
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	2 cut(s)	693, 920
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	4 cut(s)	69, 300, 437, 598
HphI	GGTGA	2 cut(s)	469, 574
Hpy166II	GTNNAC	2 cut(s)	262, 478
Hpy188I	TCNGA	1 cut(s)	658
Hpy188III	TCNNGA	5 cut(s)	286, 497, 508, 617, 924
Hpy8I	GTNNAC	2 cut(s)	262, 478
HpyAV	CCTTC	5 cut(s)	19, 183, 352, 445, 561
HpyCH4IV	ACGT	2 cut(s)	258, 264
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 402, 461
HpyF3I	CTNAG	2 cut(s)	17, 564
HpySE526I	ACGT	2 cut(s)	258, 264
Hsp92II	CATG	5 cut(s)	214, 484, 547, 595, 863
HspAI	GCGC	2 cut(s)	503, 857
KflI	GGGWCCC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	103
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	103, 302, 493, 538, 777
LmnI	GCTCC	2 cut(s)	71, 679
LweI	GCATC	1 cut(s)	341
MaeII	ACGT	2 cut(s)	258, 264
MaeIII	GTNAC	3 cut(s)	3, 576, 917
MalI	GATC	5 cut(s)	105, 304, 495, 540, 779
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	5 cut(s)	103, 302, 493, 538, 777
MboII	GAAGA	8 cut(s)	232, 271, 274, 523, 548, 722, 725, 838
MflI	RGATCY	3 cut(s)	302, 538, 777
MluCI	AATT	4 cut(s)	289, 647, 833, 887
MlyI	GAGTC	2 cut(s)	687, 914
MmeI	TCCRAC	1 cut(s)	504
MseI	TTAA	3 cut(s)	477, 629, 891
MspCI	CTTAAG	1 cut(s)	628
MspI	CCGG	4 cut(s)	69, 300, 437, 598
MspR9I	CCNGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	3 cut(s)	63, 402, 461
NciI	CCSGG	1 cut(s)	598
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	5 cut(s)	103, 302, 493, 538, 777
NlaIII	CATG	5 cut(s)	214, 484, 547, 595, 863
NlaIV	GGNNCC	6 cut(s)	67, 129, 130, 202, 227, 304
NmuCI	GTSAC	1 cut(s)	917
NspI	RCATGY	1 cut(s)	863
PkrI	GCNGC	4 cut(s)	208, 404, 562, 603
PleI	GAGTC	2 cut(s)	687, 914
PpsI	GAGTC	2 cut(s)	687, 914
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	6 cut(s)	67, 129, 130, 202, 227, 304
PspPI	GGNCC	4 cut(s)	128, 200, 595, 821
PspPPI	RGGWCCY	1 cut(s)	128
PsuI	RGATCY	3 cut(s)	302, 538, 777
RsaI	GTAC	3 cut(s)	416, 653, 864
RsaNI	GTAC	3 cut(s)	415, 652, 863
SaqAI	TTAA	3 cut(s)	477, 629, 891
SatI	GCNGC	4 cut(s)	207, 403, 561, 602
Sau3AI	GATC	5 cut(s)	103, 302, 493, 538, 777
Sau96I	GGNCC	4 cut(s)	128, 200, 595, 821
SchI	GAGTC	2 cut(s)	687, 914
ScrFI	CCNGG	1 cut(s)	598
SfaNI	GCATC	1 cut(s)	341
SinI	GGWCC	2 cut(s)	128, 821
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	4 cut(s)	289, 647, 833, 887
SsiI	CCGC	9 cut(s)	49, 204, 207, 223, 402, 455, 560, 601, 882
StyD4I	CCNGG	1 cut(s)	596
StyI	CCWWGG	1 cut(s)	591
TaiI	ACGT	2 cut(s)	261, 267
TaqI	TCGA	2 cut(s)	96, 606
TaqII	GACCGA	2 cut(s)	328, 838
TasI	AATT	4 cut(s)	289, 647, 833, 887
TatI	WGTACW	1 cut(s)	651
TauI	GCSGC	4 cut(s)	209, 405, 563, 604
Tru1I	TTAA	3 cut(s)	477, 629, 891
Tru9I	TTAA	3 cut(s)	477, 629, 891
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	917
Tsp45I	GTSAC	1 cut(s)	917
TspRI	CASTG	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	628
VpaK11BI	GGWCC	2 cut(s)	128, 821
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	863
XmiI	GTMKAC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.