Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Reverse (-)

66451502 .. 66454142

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG511200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGACGATTCTGCCCTCGTTCCTCAGCCCCGTAACCCTGTGGGGCATCTACGTCCGCCGCTGCTTCGCCGCCTCCGGCCTCTCGCAGCAGTCTATGAAGATCGACGACGACACCACCCTCCACTTCTGGGGCCCCAACCCGAATTACCAAACTAGCCCCAAACAAAACCAAAAGCCCTCCTTGGTCCTCATCCACGGCTTCGGACCTGCCGCCATGTGGCAGTGGCGGAAGCAGGTCCAGTTCTTCTGTCCCATATTCAACGTCTACGTCCCCGATCTGGTCTTCTTCGGCGGCTCGACCACCACGTCACCGAACCGGGCCGAAACGTTTCAGGCGGCCTCGGTGGCGAAGCTGCTGGAGAAGCTGGGCGTGGAGAGGTTCAACGTGGTGGGGACCAGCTACGGCGGGTTCGTGGCGCACCACTTGGCGAGGACGTGGCCGGAGAGAGTCGAGAAGGTGGTGATCGCCAGCTCAGGGGTCAACATGAGACGGAGAGATAGCGAGGCACTGCTCAACAGAGCTGACGTCGACAAAATTGAGGACCTCATGCTTCCGGCCACCGCCGCGCAGCTCCACAAGTTGATGGCTCTCGCCATGTTCAAGAAACTTGACATGATCCCCCAATTTTTCATGAATGACTTCGTACAGAAATTGTACTCGGATAAAAGGAAGGAGAAGATGGAACTTTTGAAGGGAGTGACAATTGGAAGAGATGACAAAGCAAACATATCTCCTCTTCATGATAAGGAGGTTTTGATAGTGTGGGGAGAAAACGACCAGATATTTCCTCTGGAGATGGCTACTGACCTGAAGCAGTATGTACTATTTTTCGATCAATTTAATTGCTTGGAGATGTATGTTATCATGTTACTTGTTATTGATCAATCATACCCGGAAACCTGTTTCGCTTCTTGTGATTGCAGACTTCTGGGGACGAAAGCGAGACTGGAGGTGATCAAGAACACATCACACATTCCCCAGATTGAAGATGCTGTACAGTTCAACAACATTGTACAAAACTTCTTGTGCAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0008150 GO:0016020 GO:0016787 GO:0016822 GO:0016823 GO:0030312 GO:0034820 GO:0040007 GO:0044110 GO:0044116 GO:0044117 GO:0044403 GO:0044419 GO:0044464 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

345

Amino Acids

39.36

Weight (kDa)

7.04

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	59 - 277	2.9e-24	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	61 - 333	9.2e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AatII	GACGTC	1 cut(s)	528
Acc36I	ACCTGC	2 cut(s)	214, 223
AccI	GTMKAC	2 cut(s)	264, 528
AccII	CGCG	1 cut(s)	566
AclI	AACGTT	1 cut(s)	326
AclWI	GGATC	1 cut(s)	610
AcoI	YGGCCR	2 cut(s)	437, 555
AcuI	CTGAAG	1 cut(s)	830
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	5 cut(s)	645, 656, 822, 996, 1014
AfiI	CCNNNNNNNGG	4 cut(s)	127, 216, 277, 474
AgsI	TTSAA	6 cut(s)	259, 382, 601, 691, 986, 1003
AjiI	CACGTC	2 cut(s)	306, 435
AluBI	AGCT	6 cut(s)	352, 364, 399, 471, 521, 571
AluI	AGCT	6 cut(s)	352, 364, 399, 471, 521, 571
Alw26I	GTCTC	2 cut(s)	481, 937
AlwI	GGATC	1 cut(s)	610
AoxI	GGCC	6 cut(s)	76, 130, 318, 336, 437, 555
ApaI	GGGCCC	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	60, 85, 352, 568
Asp700I	GAANNNNTTC	2 cut(s)	327, 638
AspLEI	GCGC	2 cut(s)	418, 568
AspS9I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
AsuC2I	CCSGG	2 cut(s)	317, 893
AsuHPI	GGTGA	3 cut(s)	300, 472, 964
AvaII	GGWCC	5 cut(s)	184, 203, 235, 393, 541
BaeGI	GKGCMC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	978, 1010
BbsI	GAAGAC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	4 cut(s)	47, 97, 339, 580
BccI	CCATC	3 cut(s)	577, 673, 790
BceAI	ACGGC	2 cut(s)	211, 418
BclI	TGATCA	2 cut(s)	880, 954
BcnI	CCSGG	2 cut(s)	317, 893
BcoDI	GTCTC	2 cut(s)	481, 937
BfaI	CTAG	1 cut(s)	153
BfuAI	ACCTGC	2 cut(s)	214, 223
BglI	GCCNNNNNGGC	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	317, 893
Bme18I	GGWCC	5 cut(s)	184, 203, 235, 393, 541
BmgBI	CACGTC	2 cut(s)	306, 435
BmgT120I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
BmiI	GGNNCC	4 cut(s)	131, 132, 133, 394
BmrFI	CCNGG	2 cut(s)	317, 893
BmsI	GCATC	2 cut(s)	54, 979
BpiI	GAAGAC	1 cut(s)	274
BpmI	CTGGAG	3 cut(s)	377, 812, 968
Bpu10I	CCTNAGC	2 cut(s)	23, 472
BpuMI	CCSGG	2 cut(s)	317, 893
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	180, 193, 339
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 216, 277, 474
Bse1I	ACTGG	2 cut(s)	238, 951
BseDI	CCNNGG	3 cut(s)	180, 193, 339
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	4 cut(s)	127, 216, 277, 474
BseMII	CTCAG	2 cut(s)	37, 486
BseNI	ACTGG	2 cut(s)	238, 951
BseRI	GAGGAG	1 cut(s)	723
BseSI	GKGCMC	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	47, 97, 339, 580
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	6 cut(s)	78, 132, 320, 338, 439, 557
BsiSI	CCGG	5 cut(s)	75, 316, 440, 554, 893
BslFI	GGGAC	4 cut(s)	234, 254, 406, 946
BslI	CCNNNNNNNGG	4 cut(s)	127, 216, 277, 474
BsmAI	GTCTC	2 cut(s)	481, 937
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	4 cut(s)	234, 254, 406, 946
BsnI	GGCC	6 cut(s)	78, 132, 320, 338, 439, 557
Bsp120I	GGGCCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	2 cut(s)	994, 1012
Bsp143I	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
BspANI	GGCC	6 cut(s)	78, 132, 320, 338, 439, 557
BspCNI	CTCAG	2 cut(s)	36, 485
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	2 cut(s)	630, 739
BspLI	GGNNCC	4 cut(s)	131, 132, 133, 394
BspMI	ACCTGC	2 cut(s)	214, 223
BspPI	GGATC	1 cut(s)	610
BsrGI	TGTACA	2 cut(s)	994, 1012
BsrI	ACTGG	2 cut(s)	238, 951
BssECI	CCNNGG	3 cut(s)	180, 193, 339
BssMI	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	999
Bst6I	CTCTTC	2 cut(s)	703, 741
BstACI	GRCGYC	1 cut(s)	525
BstAUI	TGTACA	2 cut(s)	994, 1012
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	23, 472
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	2 cut(s)	418, 568
BstKTI	GATC	7 cut(s)	102, 277, 465, 618, 835, 883, 957
BstMAI	GTCTC	2 cut(s)	481, 937
BstMBI	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 361, 563
BstSCI	CCNGG	2 cut(s)	315, 891
BstSLI	GKGCMC	1 cut(s)	134
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	4 cut(s)	47, 97, 339, 580
BstV2I	GAAGAC	1 cut(s)	274
BsuRI	GGCC	6 cut(s)	78, 132, 320, 338, 439, 557
BtgI	CCRYGG	1 cut(s)	193
BtrI	CACGTC	2 cut(s)	306, 435
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	2 cut(s)	227, 506
BtsIMutI	CAGTG	2 cut(s)	227, 506
BveI	ACCTGC	2 cut(s)	214, 223
Cac8I	GCNNGC	1 cut(s)	469
CciI	TCATGA	2 cut(s)	630, 739
CfoI	GCGC	2 cut(s)	418, 568
Cfr13I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
Csp6I	GTAC	5 cut(s)	644, 655, 821, 995, 1013
CviAII	CATG	8 cut(s)	214, 484, 547, 595, 613, 631, 740, 865
CviQI	GTAC	5 cut(s)	644, 655, 821, 995, 1013
DdeI	CTNAG	2 cut(s)	23, 472
DpnI	GATC	7 cut(s)	101, 276, 464, 617, 834, 882, 956
DpnII	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
EaeI	YGGCCR	2 cut(s)	437, 555
Eam1104I	CTCTTC	2 cut(s)	703, 741
EarI	CTCTTC	2 cut(s)	703, 741
EciI	GGCGGA	2 cut(s)	44, 241
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	134
Eco47I	GGWCC	5 cut(s)	184, 203, 235, 393, 541
Eco57I	CTGAAG	1 cut(s)	830
EcoO109I	RGGNCCY	3 cut(s)	130, 131, 541
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	8 cut(s)	217, 487, 550, 598, 616, 634, 743, 868
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	4 cut(s)	234, 254, 406, 946
FatI	CATG	8 cut(s)	213, 483, 546, 594, 612, 630, 739, 864
FauI	CCCGC	1 cut(s)	398
FbaI	TGATCA	2 cut(s)	880, 954
FblI	GTMKAC	2 cut(s)	264, 528
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	153
GlaI	GCGC	2 cut(s)	417, 567
GsaI	CCCAGC	1 cut(s)	368
GsuI	CTGGAG	3 cut(s)	377, 812, 968
HaeIII	GGCC	6 cut(s)	78, 132, 320, 338, 439, 557
HapII	CCGG	5 cut(s)	75, 316, 440, 554, 893
HhaI	GCGC	2 cut(s)	418, 568
Hin1I	GRCGYC	1 cut(s)	525
Hin1II	CATG	8 cut(s)	217, 487, 550, 598, 616, 634, 743, 868
Hin6I	GCGC	2 cut(s)	416, 566
HinP1I	GCGC	2 cut(s)	416, 566
HincII	GTYRAC	2 cut(s)	481, 529
HindII	GTYRAC	2 cut(s)	481, 529
HinfI	GANTC	2 cut(s)	7, 447
HpaII	CCGG	5 cut(s)	75, 316, 440, 554, 893
HphI	GGTGA	3 cut(s)	300, 472, 964
Hpy166II	GTNNAC	3 cut(s)	265, 481, 529
Hpy188I	TCNGA	2 cut(s)	203, 661
Hpy188III	TCNNGA	6 cut(s)	451, 601, 631, 740, 791, 958
Hpy8I	GTNNAC	3 cut(s)	265, 481, 529
Hpy99I	CGWCG	3 cut(s)	107, 110, 530
HpyAV	CCTTC	3 cut(s)	448, 664, 685
HpyCH4III	ACNGT	1 cut(s)	999
HpyCH4IV	ACGT	8 cut(s)	51, 261, 267, 305, 326, 384, 434, 525
HpyCH4V	TGCA	2 cut(s)	921, 1029
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 361, 563
HpyF3I	CTNAG	2 cut(s)	23, 472
HpySE526I	ACGT	8 cut(s)	51, 261, 267, 305, 326, 384, 434, 525
Hsp92I	GRCGYC	1 cut(s)	525
Hsp92II	CATG	8 cut(s)	217, 487, 550, 598, 616, 634, 743, 868
HspAI	GCGC	2 cut(s)	416, 566
Ksp22I	TGATCA	2 cut(s)	880, 954
Kzo9I	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	4 cut(s)	47, 97, 339, 580
LweI	GCATC	2 cut(s)	54, 979
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	8 cut(s)	51, 261, 267, 305, 326, 384, 434, 525
MaeIII	GTNAC	4 cut(s)	31, 306, 697, 867
MalI	GATC	7 cut(s)	101, 276, 464, 617, 834, 882, 956
MboI	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
MboII	GAAGA	8 cut(s)	109, 235, 274, 277, 688, 720, 728, 998
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	7 cut(s)	142, 534, 623, 650, 702, 836, 841
MlyI	GAGTC	1 cut(s)	456
MroXI	GAANNNNTTC	2 cut(s)	327, 638
MseI	TTAA	1 cut(s)	840
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	5 cut(s)	75, 316, 440, 554, 893
MspR9I	CCNGG	2 cut(s)	317, 893
MunI	CAATTG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	3 cut(s)	344, 361, 563
NciI	CCSGG	2 cut(s)	317, 893
NdeII	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
NlaIII	CATG	8 cut(s)	217, 487, 550, 598, 616, 634, 743, 868
NlaIV	GGNNCC	4 cut(s)	131, 132, 133, 394
NmuCI	GTSAC	2 cut(s)	306, 697
PagI	TCATGA	2 cut(s)	630, 739
PcsI	WCGNNNNNNNCGW	2 cut(s)	302, 408
PdmI	GAANNNNTTC	2 cut(s)	327, 638
PfeI	GAWTC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PpuMI	RGGWCCY	1 cut(s)	541
Psp1406I	AACGTT	1 cut(s)	326
Psp5II	RGGWCCY	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	131, 132, 133, 394
PspOMI	GGGCCC	1 cut(s)	130
PspPI	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
PspPPI	RGGWCCY	1 cut(s)	541
RsaI	GTAC	5 cut(s)	645, 656, 822, 996, 1014
RsaNI	GTAC	5 cut(s)	644, 655, 821, 995, 1013
SalI	GTCGAC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	840
Sau3AI	GATC	7 cut(s)	99, 274, 462, 615, 832, 880, 954
Sau96I	GGNCC	8 cut(s)	130, 131, 184, 203, 235, 318, 393, 541
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	317, 893
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	54, 979
SinI	GGWCC	5 cut(s)	184, 203, 235, 393, 541
Sse9I	AATT	7 cut(s)	142, 534, 623, 650, 702, 836, 841
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	315, 891
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	999
TaiI	ACGT	8 cut(s)	54, 264, 270, 308, 329, 387, 437, 528
TaqI	TCGA	5 cut(s)	102, 296, 450, 528, 831
TasI	AATT	7 cut(s)	142, 534, 623, 650, 702, 836, 841
TatI	WGTACW	4 cut(s)	654, 820, 994, 1012
TauI	GCSGC	6 cut(s)	60, 71, 212, 294, 338, 566
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	2 cut(s)	227, 513
TseFI	GTSAC	2 cut(s)	306, 697
TseI	GCWGC	4 cut(s)	60, 85, 352, 568
Tsp45I	GTSAC	2 cut(s)	306, 697
TspDTI	ATGAA	4 cut(s)	110, 619, 647, 728
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	227, 513
VpaK11BI	GGWCC	5 cut(s)	184, 203, 235, 393, 541
XmiI	GTMKAC	2 cut(s)	264, 528
XmnI	GAANNNNTTC	2 cut(s)	327, 638
XspI	CTAG	1 cut(s)	153
ZraI	GACGTC	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.