Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005845

Physical Location & Seq

Genomic Coordinates Reverse (-)

7253849 .. 7256156

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCTCCCTCGTTTCTAAGCGTCGCAAGATTCGTTGAGGCACTACTCCGCCGGAGATTCTCCTCCGCTGGTCTCTCCTTACAAACCCTATCCATCGACTCCGAAACCACCATACAGTTCTGGGGACCACCACCGTCTTCATCATCGGAAAATACACAAAAACCGTCGCTCCTCCTCCTCCATGGTTTTGGACCTTCCGCTGTATGGCAATGGAGCCATCAGGTCAAGCCACTCTCTCACTTCTTTCGTCTCTACGTCCCCGACCTAGTCTTCTTCGGCGGCTCCTCTTCCTCCGGTGAGAACCGGTCGGAGATGTTTCAAGCGTTGTGCATGGGGAAGCTTATGGAGAAGCTCGAGGTCGAGAGATTCAGTGTCGTTGGGACGAGCTACGGCGGGTTTGTGGCGTATAATATGGCGAAAATGTTTCCGGAGAAAGTGGAGAAGGTGGTGCTTGCGAGCTCCGGTGTTAATTTGCGGAGGAGTGACAACGAGGCGTTTATCGCTAGGGCTAAGTGCCACCGTATCAAGGAGGTGATGCTTCCTGCTTCTGCAACAGATCTTAGGAGATTCTCTGGGATGGTTTCTTCTAAGAGACTCGATTATGTCCCAGATTTTGTCTTGAACGACTTTTGCCAGAAAATGTATTCGGAAAAGAGAGAGGAAAAAGCAGAACTTCTCGAGGGGCTGAGTATTGGGAAGGATGACAAAACCAACGTTTCTCCAATTCAACAGGATGTAATGCTGATATGGGGTGAGCAAGATCAAGTTTTTCCTTTAAAAATGGCCCATGACCTCAAAGAGATGTTGGGGACTAAGGCGACGCTAAAAGTTATACAAAAGACATCACATATACCTCAAACGGAGAAGTCCAAAGAATTCAATGGCTTTGTCATGTCTTTCTTATTACCTCCTTCTCCATCACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

308

Amino Acids

34.58

Weight (kDa)

8.85

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	107 - 247	7.7e-16	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	109 - 212	2.6e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33180 AT4G33180 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950 AT5G21950
fragaria_vesca	FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850 FvH4_2g30850
malus_domestica	MD15G1048600.v1.1
prunus_persica	Prupe.1G403000_v2.0.a1
pyrus_communis	pycom15g04750
rosa_chinensis	RchiOBHm_Chr6g0312001
rosa_laevigata	RLG00000010362
rosa_multiflora	Rmu_co8393279.1_g000001 Rmu_sc0005381.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157150
rosa_samantha	Rh6AG508500 Rh6BG519800 Rh6CG525700 Rh6DG511200
rosa_wichuraiana	Rw6G044270 Rw6G044280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	6 cut(s)	49, 66, 198, 279, 393, 475
AclI	AACGTT	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	875
AfiI	CCNNNNNNNGG	2 cut(s)	204, 526
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	320, 622, 728, 880
AluBI	AGCT	4 cut(s)	340, 352, 387, 459
AluI	AGCT	4 cut(s)	340, 352, 387, 459
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	3 cut(s)	77, 254, 586
Ama87I	CYCGRG	2 cut(s)	353, 677
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	1 cut(s)	783
ApoI	RAATTY	1 cut(s)	875
AsiGI	ACCGGT	1 cut(s)	303
AspS9I	GGNCC	3 cut(s)	125, 191, 784
AsuHPI	GGTGA	4 cut(s)	308, 544, 764, 912
AvaI	CYCGRG	2 cut(s)	353, 677
AvaII	GGWCC	2 cut(s)	125, 191
BanII	GRGCYC	1 cut(s)	461
BbsI	GAAGAC	2 cut(s)	129, 262
Bbv12I	GWGCWC	1 cut(s)	461
BccI	CCATC	4 cut(s)	101, 225, 571, 925
BceAI	ACGGC	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	77, 254, 586
BfaI	CTAG	2 cut(s)	266, 504
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	280
BlsI	GCNGC	1 cut(s)	281
Bme18I	GGWCC	2 cut(s)	125, 191
BmeT110I	CYCGRG	2 cut(s)	353, 677
BmgT120I	GGNCC	3 cut(s)	125, 191, 784
BmiI	GGNNCC	4 cut(s)	6, 126, 215, 283
BmsI	GCATC	1 cut(s)	525
BpiI	GAAGAC	2 cut(s)	129, 262
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	4 cut(s)	293, 303, 427, 461
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 526
Bse118I	RCCGGY	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	582, 706, 739
BseLI	CCNNNNNNNGG	2 cut(s)	204, 526
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	677
BseRI	GAGGAG	6 cut(s)	52, 161, 164, 167, 274, 493
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	785
BshTI	ACCGGT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	2 cut(s)	353, 677
BsiSI	CCGG	5 cut(s)	52, 294, 304, 428, 462
BslFI	GGGAC	5 cut(s)	138, 242, 394, 590, 823
BslI	CCNNNNNNNGG	2 cut(s)	204, 526
BsmAI	GTCTC	3 cut(s)	77, 254, 586
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	5 cut(s)	138, 242, 394, 590, 823
BsnI	GGCC	1 cut(s)	785
Bso31I	GGTCTC	1 cut(s)	77
BsoBI	CYCGRG	2 cut(s)	353, 677
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	556, 760
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	6 cut(s)	49, 66, 198, 279, 393, 475
BspANI	GGCC	1 cut(s)	785
BspCNI	CTCAG	1 cut(s)	678
BspEI	TCCGGA	1 cut(s)	427
BspLI	GGNNCC	4 cut(s)	6, 126, 215, 283
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	215
BsrFI	RCCGGY	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	556, 760
BssT1I	CCWWGG	1 cut(s)	181
Bst4CI	ACNGT	4 cut(s)	117, 135, 165, 521
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	453, 457
BstDEI	CTNAG	6 cut(s)	17, 510, 560, 588, 686, 813
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	3 cut(s)	582, 706, 739
BstKTI	GATC	2 cut(s)	559, 763
BstMAI	GTCTC	3 cut(s)	77, 254, 586
BstMBI	GATC	2 cut(s)	556, 760
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstV2I	GAAGAC	2 cut(s)	129, 262
BstX2I	RGATCY	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	785
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	582, 706, 739
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	453, 457
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	3 cut(s)	125, 191, 784
CseI	GACGC	2 cut(s)	10, 829
CspAI	ACCGGT	1 cut(s)	303
CviAII	CATG	4 cut(s)	182, 331, 788, 892
DdeI	CTNAG	6 cut(s)	17, 510, 560, 588, 686, 813
DpnI	GATC	2 cut(s)	558, 762
DpnII	GATC	2 cut(s)	556, 760
DraI	TTTAAA	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
EciI	GGCGGA	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	125, 191
Eco53kI	GAGCTC	1 cut(s)	459
Eco88I	CYCGRG	2 cut(s)	353, 677
EcoICRI	GAGCTC	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	875
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	4 cut(s)	185, 334, 791, 895
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FaqI	GGGAC	5 cut(s)	138, 242, 394, 590, 823
FatI	CATG	4 cut(s)	181, 330, 787, 891
FauI	CCCGC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	280
FokI	GGATG	3 cut(s)	589, 713, 746
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	266, 504
GluI	GCNGC	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	785
HapII	CCGG	5 cut(s)	52, 294, 304, 428, 462
HgaI	GACGC	2 cut(s)	10, 829
Hin1II	CATG	4 cut(s)	185, 334, 791, 895
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	6 cut(s)	30, 57, 98, 366, 567, 594
HpaII	CCGG	5 cut(s)	52, 294, 304, 428, 462
HphI	GGTGA	4 cut(s)	308, 544, 764, 912
Hpy188I	TCNGA	4 cut(s)	103, 148, 310, 649
Hpy188III	TCNNGA	4 cut(s)	361, 428, 619, 677
Hpy99I	CGWCG	3 cut(s)	26, 169, 823
HpyAV	CCTTC	4 cut(s)	204, 436, 691, 921
HpyCH4III	ACNGT	4 cut(s)	117, 135, 165, 521
HpyCH4IV	ACGT	2 cut(s)	255, 714
HpyCH4V	TGCA	2 cut(s)	330, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	6 cut(s)	17, 510, 560, 588, 686, 813
HpySE526I	ACGT	2 cut(s)	255, 714
Hsp92II	CATG	4 cut(s)	185, 334, 791, 895
Kpn2I	TCCGGA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	556, 760
LmnI	GCTCC	5 cut(s)	10, 174, 213, 287, 464
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	2 cut(s)	266, 504
MaeII	ACGT	2 cut(s)	255, 714
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	558, 762
MboI	GATC	2 cut(s)	556, 760
MboII	GAAGA	5 cut(s)	129, 262, 265, 279, 576
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	3 cut(s)	469, 723, 875
MlyI	GAGTC	2 cut(s)	92, 588
MmeI	TCCRAC	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	427
MseI	TTAA	2 cut(s)	468, 776
MspA1I	CMGCKG	2 cut(s)	68, 200
MspI	CCGG	5 cut(s)	52, 294, 304, 428, 462
MwoI	GCNNNNNNNGC	1 cut(s)	500
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	556, 760
NlaIII	CATG	4 cut(s)	185, 334, 791, 895
NlaIV	GGNNCC	4 cut(s)	6, 126, 215, 283
NmuCI	GTSAC	1 cut(s)	482
PaeR7I	CTCGAG	2 cut(s)	353, 677
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PfeI	GAWTC	4 cut(s)	30, 57, 366, 567
PflFI	GACNNNGTC	1 cut(s)	266
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	281
PleI	GAGTC	2 cut(s)	92, 588
PpsI	GAGTC	2 cut(s)	92, 588
Psp124BI	GAGCTC	1 cut(s)	461
Psp1406I	AACGTT	1 cut(s)	714
PspN4I	GGNNCC	4 cut(s)	6, 126, 215, 283
PspPI	GGNCC	3 cut(s)	125, 191, 784
PspXI	VCTCGAGB	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	556
PsyI	GACNNNGTC	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	461
SaqAI	TTAA	2 cut(s)	468, 776
SatI	GCNGC	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	556, 760
Sau96I	GGNCC	3 cut(s)	125, 191, 784
SchI	GAGTC	2 cut(s)	92, 588
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	525
Sfr274I	CTCGAG	2 cut(s)	353, 677
SinI	GGWCC	2 cut(s)	125, 191
SlaI	CTCGAG	2 cut(s)	353, 677
SmlI	CTYRAG	2 cut(s)	353, 677
SmoI	CTYRAG	2 cut(s)	353, 677
Sse9I	AATT	3 cut(s)	469, 723, 875
SsiI	CCGC	6 cut(s)	49, 66, 198, 279, 393, 475
SspMI	CTAG	2 cut(s)	266, 504
SstI	GAGCTC	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	181
TaaI	ACNGT	4 cut(s)	117, 135, 165, 521
TaiI	ACGT	2 cut(s)	258, 717
TaqI	TCGA	5 cut(s)	96, 354, 360, 597, 678
TasI	AATT	3 cut(s)	469, 723, 875
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	4 cut(s)	30, 57, 366, 567
Tru1I	TTAA	2 cut(s)	468, 776
Tru9I	TTAA	2 cut(s)	468, 776
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	125, 191
XapI	RAATTY	1 cut(s)	875
XhoI	CTCGAG	2 cut(s)	353, 677
XspI	CTAG	2 cut(s)	266, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.