AT4G33470

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006797
Physical Location & Seq
Reverse (-)
16102595 .. 16105550
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33470.1

Sequence Viewer

Length: 1272 bp
ATGTCCATGGCGCTAATTGTCCGGCCATTCTTTGTTCCTGGAAGTGCTGGAATTTCTGGGAGTAGAAACATATGCAAGAAAAATCAATGGAGGAAGTATCTTCTGAAACCCAGTGGATCATCCATTAATTGCTCATTTAGTACAGAGAAGAATCCTCTATTACCATCTATCCAGCAGTTAGCCGATGCTCGTCTCATATACAGTGTATCTGCAGCATTGGGTCATAACAAGGAATCACATCCAGAATGCAGCGCTAGAGTTCCTGCCATTGTTAATGCTCTCGAGATGAATGAGCTCACTCCTAAGTTCCGTGGCTCACAGATTCTTGAACTCGCAAATTTCAAGACTGCAACTGTAGAAGACATTGCAAATGTTCACGACAAGGCTTATGTCTTTGGCCTAGAAAAGGCAATGGATGAGGCTTCAGATTCGGGACTAATTTTCATTGAAGGCTCTGGACCAACATATGCCACTTCAACGACATTCCAAGATTCACTTATCGCAGCAGGAGCCGGAATGGCTTTAGTTGATTCAGTGATCGCAGCATCCAGAAACAGCGTAGATCCACCCATTGGTTTTGCATTGATAAGACCTCCTGGGCACCACGCCGTGCCAAAAGGTCCGATGGGGTTCTGTGTTTTTGGTAATGTGGCAATCGCAGCTCGTCATGCCCAACGCACACATGGTCTGAAGCGCATCTTCATAATTGACTTCGATGTTCACCACGGGAATGGCACAAATGATGCATTTACTGAGGACCCTGATATATTCTTTTTGTCAACTCATCAGGACGGAAGCTACCCTGGAACAGGGAAAATCAGTGACATAGGTAAAGGAAAAGGTGAAGGTACCACTCTAAATTTACCTTTGCCTGGAGGTTCAGGTGATATTGCAATGAGAACCGTTTTTGAAGAAATCATTGTTCCATGTGCTCAACGGTTCAAGCCAGATATTATTCTTGTTTCTGCTGGGTATGATGCTCATGTCCTGGATCCACTAGCAAATTTACAGTTCACGACCGCAACATACTACTCATTGGCAAAAGATATAAAGCGGTTAGCAAAAGAAGTATGCGGAGGGCGGTGTGTGTTTTTCTTGGAAGGAGGATACAATCTTGAATCACTTTCATCATCTGTGGCAGACTCGTTTCGAGCATTGCTTGGAGAAGATAGCTTGGCATCAGAGTTTGATAACCCAGCTTACTTGTACGATGAACCAATGAGAAAGGTGCGAGATGCAATTCAGAGAGCCAAAAGCATTCATTGCTTATAA

Protein Analysis

423

Amino Acids

45.58

Weight (kDa)

6.19

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 80 - 385 6.1e-92 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1270
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 2 cut(s) 600, 848
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 4 cut(s) 1020, 1054, 1074, 1081
AclWI GGATC 4 cut(s) 124, 557, 986, 999
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 4 cut(s) 51, 337, 859, 1003
AcuI CTGAAG 2 cut(s) 408, 710
AdeI CACNNNGTG 1 cut(s) 610
AfaI GTAC 3 cut(s) 142, 850, 1208
AfeI AGCGCT 1 cut(s) 253
AfiI CCNNNNNNNGG 4 cut(s) 406, 572, 809, 872
AgsI TTSAA 7 cut(s) 329, 343, 449, 477, 911, 943, 1118
AjnI CCWGG 5 cut(s) 37, 595, 802, 871, 987
AluBI AGCT 5 cut(s) 295, 662, 798, 1173, 1199
AluI AGCT 5 cut(s) 295, 662, 798, 1173, 1199
Alw21I GWGCWC 2 cut(s) 297, 934
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 4 cut(s) 124, 557, 986, 999
Ama87I CYCGRG 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 253
AoxI GGCC 2 cut(s) 23, 397
ApeKI GCWGC 5 cut(s) 212, 249, 503, 542, 659
ApoI RAATTY 4 cut(s) 51, 337, 859, 1003
AseI ATTAAT 1 cut(s) 126
Asp718I GGTACC 1 cut(s) 848
AspLEI GCGC 3 cut(s) 13, 254, 696
AspS9I GGNCC 3 cut(s) 458, 620, 757
AsuHPI GGTGA 3 cut(s) 713, 854, 896
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 3 cut(s) 458, 620, 757
BaeGI GKGCMC 1 cut(s) 603
BamHI GGATCC 1 cut(s) 991
BanI GGYRCC 2 cut(s) 600, 848
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 297, 934
BbvI GCAGC 5 cut(s) 224, 261, 515, 554, 671
BccI CCATC 2 cut(s) 172, 619
BceAI ACGGC 1 cut(s) 593
BciT130I CCWGG 5 cut(s) 39, 597, 804, 873, 989
BciVI GTATCC 1 cut(s) 1100
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 3 cut(s) 255, 401, 998
BfmI CTRYAG 2 cut(s) 210, 354
BfoI RGCGCY 2 cut(s) 14, 255
BfuI GTATCC 1 cut(s) 1100
BglI GCCNNNNNGGC 1 cut(s) 518
BisI GCNGC 5 cut(s) 213, 250, 504, 543, 660
BlsI GCNGC 5 cut(s) 214, 251, 505, 544, 661
Bme1390I CCNGG 5 cut(s) 39, 597, 804, 873, 989
Bme18I GGWCC 3 cut(s) 458, 620, 757
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 3 cut(s) 458, 620, 757
BmiI GGNNCC 5 cut(s) 511, 602, 759, 850, 993
BmrFI CCNGG 5 cut(s) 39, 597, 804, 873, 989
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 7 cut(s) 175, 554, 705, 733, 967, 1187, 1225
BmuI ACTGGG 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 894
BsaJI CCNNGG 5 cut(s) 6, 310, 596, 724, 802
Bsc4I CCNNNNNNNGG 4 cut(s) 406, 572, 809, 872
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 5 cut(s) 363, 417, 900, 1154, 1261
BseBI CCWGG 5 cut(s) 39, 597, 804, 873, 989
BseDI CCNNGG 5 cut(s) 6, 310, 596, 724, 802
BseGI GGATG 4 cut(s) 119, 238, 421, 545
BseLI CCNNNNNNNGG 4 cut(s) 406, 572, 809, 872
BseMI GCAATG 5 cut(s) 363, 417, 900, 1154, 1261
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 5 cut(s) 224, 261, 515, 554, 671
BseYI CCCAGC 2 cut(s) 968, 1195
Bsh1285I CGRYCG 1 cut(s) 1020
BshFI GGCC 2 cut(s) 25, 399
BshNI GGYRCC 2 cut(s) 600, 848
BsiEI CGRYCG 1 cut(s) 1020
BsiHKAI GWGCWC 2 cut(s) 297, 934
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 22, 513
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 4 cut(s) 406, 572, 809, 872
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 447
BsmI GAATGC 2 cut(s) 251, 1257
BsnI GGCC 2 cut(s) 25, 399
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 3 cut(s) 297, 603, 934
Bsp143I GATC 4 cut(s) 116, 537, 562, 991
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 4 cut(s) 1020, 1054, 1074, 1081
BspANI GGCC 2 cut(s) 25, 399
BspCNI CTCAG 1 cut(s) 745
BspLI GGNNCC 5 cut(s) 511, 602, 759, 850, 993
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 4 cut(s) 124, 557, 986, 999
BspT107I GGYRCC 2 cut(s) 600, 848
BsrDI GCAATG 5 cut(s) 363, 417, 900, 1154, 1261
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 5 cut(s) 6, 310, 596, 724, 802
BssMI GATC 4 cut(s) 116, 537, 562, 991
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 5 cut(s) 39, 597, 804, 873, 989
Bst4CI ACNGT 5 cut(s) 203, 355, 904, 939, 1011
BstAPI GCANNNNNTGC 1 cut(s) 1263
BstDEI CTNAG 2 cut(s) 303, 753
BstDSI CCRYGG 3 cut(s) 6, 310, 724
BstENI CCTNNNNNAGG 2 cut(s) 404, 807
BstF5I GGATG 4 cut(s) 119, 238, 421, 545
BstH2I RGCGCY 2 cut(s) 14, 255
BstHHI GCGC 3 cut(s) 13, 254, 696
BstKTI GATC 4 cut(s) 119, 540, 565, 994
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 116, 537, 562, 991
BstMCI CGRYCG 1 cut(s) 1020
BstMWI GCNNNNNNNGC 5 cut(s) 509, 518, 659, 668, 1263
BstNI CCWGG 5 cut(s) 39, 597, 804, 873, 989
BstSCI CCNGG 5 cut(s) 37, 595, 802, 871, 987
BstSFI CTRYAG 2 cut(s) 210, 354
BstSLI GKGCMC 1 cut(s) 603
BstV1I GCAGC 5 cut(s) 224, 261, 515, 554, 671
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 562, 991
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 2 cut(s) 562, 991
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 2 cut(s) 25, 399
BtgI CCRYGG 3 cut(s) 6, 310, 724
BtsCI GGATG 4 cut(s) 119, 238, 421, 545
BtsIMutI CAGTG 4 cut(s) 118, 208, 540, 826
CfoI GCGC 3 cut(s) 13, 254, 696
Cfr13I GGNCC 3 cut(s) 458, 620, 757
Csp6I GTAC 3 cut(s) 141, 849, 1207
CviAII CATG 5 cut(s) 7, 668, 683, 927, 983
CviQI GTAC 3 cut(s) 141, 849, 1207
DdeI CTNAG 2 cut(s) 303, 753
DpnI GATC 4 cut(s) 118, 539, 564, 993
DpnII GATC 4 cut(s) 116, 537, 562, 991
DraIII CACNNNGTG 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 3 cut(s) 458, 620, 757
Eco47III AGCGCT 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 408, 710
Eco88I CYCGRG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 295
EcoNI CCTNNNNNAGG 2 cut(s) 404, 807
EcoO109I RGGNCCY 1 cut(s) 757
EcoRII CCWGG 5 cut(s) 37, 595, 802, 871, 987
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 5 cut(s) 10, 671, 686, 930, 986
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 683, 715
FaqI GGGAC 1 cut(s) 447
FatI CATG 5 cut(s) 6, 667, 682, 926, 982
FauNDI CATATG 2 cut(s) 71, 466
Fnu4HI GCNGC 5 cut(s) 213, 250, 504, 543, 660
FokI GGATG 4 cut(s) 106, 225, 428, 532
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 5 cut(s) 213, 250, 504, 543, 660
FspBI CTAG 3 cut(s) 255, 401, 998
GlaI GCGC 3 cut(s) 12, 253, 695
GluI GCNGC 5 cut(s) 213, 250, 504, 543, 660
GsaI CCCAGC 2 cut(s) 972, 1199
GsuI CTGGAG 1 cut(s) 894
HaeII RGCGCY 2 cut(s) 14, 255
HaeIII GGCC 2 cut(s) 25, 399
HapII CCGG 2 cut(s) 22, 513
HhaI GCGC 3 cut(s) 13, 254, 696
Hin1II CATG 5 cut(s) 10, 671, 686, 930, 986
Hin6I GCGC 3 cut(s) 11, 252, 694
HinP1I GCGC 3 cut(s) 11, 252, 694
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HinfI GANTC 8 cut(s) 151, 233, 322, 428, 491, 530, 1118, 1142
HpaII CCGG 2 cut(s) 22, 513
HphI GGTGA 3 cut(s) 713, 854, 896
Hpy166II GTNNAC 4 cut(s) 376, 721, 780, 1014
Hpy188I TCNGA 6 cut(s) 105, 427, 624, 690, 1183, 1245
Hpy8I GTNNAC 4 cut(s) 376, 721, 780, 1014
HpyAV CCTTC 3 cut(s) 443, 839, 1094
HpyCH4III ACNGT 5 cut(s) 203, 355, 904, 939, 1011
HpyCH4V TGCA 9 cut(s) 75, 212, 249, 350, 368, 581, 746, 893, 1238
HpyF10VI GCNNNNNNNGC 5 cut(s) 509, 518, 659, 668, 1263
HpyF3I CTNAG 2 cut(s) 303, 753
Hsp92II CATG 5 cut(s) 10, 671, 686, 930, 986
HspAI GCGC 3 cut(s) 11, 252, 694
KpnI GGTACC 1 cut(s) 852
Kzo9I GATC 4 cut(s) 116, 537, 562, 991
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 5 cut(s) 224, 261, 515, 554, 671
LweI GCATC 7 cut(s) 175, 554, 705, 733, 967, 1187, 1225
MaeI CTAG 3 cut(s) 255, 401, 998
MaeIII GTNAC 1 cut(s) 821
MalI GATC 4 cut(s) 118, 539, 564, 993
MboI GATC 4 cut(s) 116, 537, 562, 991
MboII GAAGA 6 cut(s) 92, 160, 371, 691, 923, 1178
MflI RGATCY 2 cut(s) 562, 991
MhlI GDGCHC 3 cut(s) 297, 603, 934
MluCI AATT 9 cut(s) 15, 51, 127, 337, 438, 705, 859, 1003, 1239
MlyI GAGTC 1 cut(s) 1136
MnlI CCTC 8 cut(s) 84, 165, 412, 603, 748, 869, 1070, 1097
Mph1103I ATGCAT 1 cut(s) 748
MseI TTAA 2 cut(s) 126, 273
MslI CAYNNNNRTG 1 cut(s) 729
MspI CCGG 2 cut(s) 22, 513
MspR9I CCNGG 5 cut(s) 39, 597, 804, 873, 989
Mva1269I GAATGC 2 cut(s) 251, 1257
MvaI CCWGG 5 cut(s) 39, 597, 804, 873, 989
MwoI GCNNNNNNNGC 5 cut(s) 509, 518, 659, 668, 1263
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 2 cut(s) 71, 466
NdeII GATC 4 cut(s) 116, 537, 562, 991
NlaIII CATG 5 cut(s) 10, 671, 686, 930, 986
NlaIV GGNNCC 5 cut(s) 511, 602, 759, 850, 993
NmuCI GTSAC 1 cut(s) 821
NsiI ATGCAT 1 cut(s) 748
PaeR7I CTCGAG 1 cut(s) 281
PctI GAATGC 2 cut(s) 251, 1257
PfeI GAWTC 7 cut(s) 151, 233, 322, 428, 491, 530, 1118
PflMI CCANNNNNTGG 1 cut(s) 572
PfoI TCCNGGA 2 cut(s) 37, 987
PkrI GCNGC 5 cut(s) 214, 251, 505, 544, 661
PleI GAGTC 1 cut(s) 1136
PpsI GAGTC 1 cut(s) 1136
PpuMI RGGWCCY 1 cut(s) 757
PshBI ATTAAT 1 cut(s) 126
PsiI TTATAA 1 cut(s) 1270
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 5 cut(s) 37, 595, 802, 871, 987
PspFI CCCAGC 2 cut(s) 968, 1195
PspGI CCWGG 5 cut(s) 37, 595, 802, 871, 987
PspN4I GGNNCC 5 cut(s) 511, 602, 759, 850, 993
PspPI GGNCC 3 cut(s) 458, 620, 757
PspPPI RGGWCCY 1 cut(s) 757
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 2 cut(s) 562, 991
RsaI GTAC 3 cut(s) 142, 850, 1208
RsaNI GTAC 3 cut(s) 141, 849, 1207
RseI CAYNNNNRTG 1 cut(s) 729
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 126, 273
SatI GCNGC 5 cut(s) 213, 250, 504, 543, 660
Sau3AI GATC 4 cut(s) 116, 537, 562, 991
Sau96I GGNCC 3 cut(s) 458, 620, 757
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 5 cut(s) 39, 597, 804, 873, 989
SduI GDGCHC 3 cut(s) 297, 603, 934
SfaNI GCATC 7 cut(s) 175, 554, 705, 733, 967, 1187, 1225
SfcI CTRYAG 2 cut(s) 210, 354
Sfr274I CTCGAG 1 cut(s) 281
SinI GGWCC 3 cut(s) 458, 620, 757
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 9 cut(s) 15, 51, 127, 337, 438, 705, 859, 1003, 1239
SsiI CCGC 4 cut(s) 1020, 1054, 1074, 1081
SspMI CTAG 3 cut(s) 255, 401, 998
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 5 cut(s) 37, 595, 802, 871, 987
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 5 cut(s) 203, 355, 904, 939, 1011
TaqI TCGA 3 cut(s) 282, 714, 1150
TasI AATT 9 cut(s) 15, 51, 127, 337, 438, 705, 859, 1003, 1239
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 7 cut(s) 151, 233, 322, 428, 491, 530, 1118
Tru1I TTAA 2 cut(s) 126, 273
Tru9I TTAA 2 cut(s) 126, 273
TscAI CASTG 4 cut(s) 118, 208, 540, 826
TseFI GTSAC 1 cut(s) 821
TseI GCWGC 5 cut(s) 212, 249, 503, 542, 659
Tsp45I GTSAC 1 cut(s) 821
TspDTI ATGAA 6 cut(s) 302, 433, 691, 1116, 1227, 1250
TspGWI ACGGA 2 cut(s) 299, 807
TspRI CASTG 4 cut(s) 118, 208, 540, 826
Van91I CCANNNNNTGG 1 cut(s) 572
VpaK11BI GGWCC 3 cut(s) 458, 620, 757
VspI ATTAAT 1 cut(s) 126
XagI CCTNNNNNAGG 2 cut(s) 404, 807
XapI RAATTY 4 cut(s) 51, 337, 859, 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 3 cut(s) 255, 401, 998
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.