Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006797

Physical Location & Seq

Genomic Coordinates Reverse (-)

23420000 .. 23420567

Gene Structure 568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0234600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTCATCGAACTTGGTGCAGCTCCTGGAGCATTAACAGATCCATGTACCAAAAGTCCTACAGGCAAAACACCAGCGGACCTAGCTTCTGAAAAGGGGTACAAAGGAATAGCTGCTTATCTTTCATCACTTATATTGGATATCAAGGATGCAAATTCTGCAGAGAGTTCAAGAGAAAAATTAGTCCAACCAGTTCCAGAACGAATTCCAGCTTCTAGCAGCGATGGGGATTTAGCTGATGGGCTTTCCATGAGGGCTCATATAACAGGTCACCAGATGAAGAAAAACTATGGTATGAGCTGGGCCGTAAGAACTGTGGGGGTGATTTTGCGTTGGAGAGGACGGGGAAAACGAAGAAGGTTGCGTCGGTTAGAGCTAGAACTACCTAGTGAGGGCCCTTATAATATTAGTTATGACTTTCTAAAGATTCAGGTATATTTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

148

Amino Acids

16.34

Weight (kDa)

9.55

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33470
fragaria_vesca	FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510
malus_domestica	MD01G1005700.v1.1
prunus_persica	Prupe.4G272300_v2.0.a1 Prupe.4G272300_v2.0.a1 Prupe.4G272300_v2.0.a1
pyrus_communis	pycom01g01290
rosa_chinensis	RchiOBHm_Chr2g0121851
rosa_laevigata	RLG00000018632
rosa_multiflora	Rmu_sc0003880.1_g000035
rosa_roxburghii	Rroxscaffold_2G00122220
rosa_rugosa	Rorug02G0234600
rosa_samantha	Rh2AG291500 Rh2BG302000 Rh2DG316000
rosa_wichuraiana	Rw2G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	154, 204
AfaI	GTAC	2 cut(s)	49, 101
AfiI	CCNNNNNNNGG	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	7 cut(s)	23, 86, 113, 212, 236, 300, 376
AluI	AGCT	7 cut(s)	23, 86, 113, 212, 236, 300, 376
AlwI	GGATC	1 cut(s)	35
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	303, 394
ApaI	GGGCCC	1 cut(s)	398
ApeKI	GCWGC	3 cut(s)	20, 113, 219
ApoI	RAATTY	2 cut(s)	154, 204
Asp700I	GAANNNNTTC	1 cut(s)	204
AspS9I	GGNCC	4 cut(s)	79, 303, 394, 395
AsuHPI	GGTGA	2 cut(s)	263, 334
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	398
BanII	GRGCYC	2 cut(s)	259, 398
BbvI	GCAGC	3 cut(s)	32, 100, 231
BccI	CCATC	2 cut(s)	218, 233
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	27
BfaI	CTAG	4 cut(s)	83, 216, 377, 387
BfmI	CTRYAG	2 cut(s)	60, 159
BisI	GCNGC	3 cut(s)	21, 114, 220
BlsI	GCNGC	3 cut(s)	22, 115, 221
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	4 cut(s)	79, 303, 394, 395
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	3 cut(s)	32, 100, 231
BseYI	CCCAGC	1 cut(s)	300
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	305, 396
BslI	CCNNNNNNNGG	1 cut(s)	392
BsnI	GGCC	2 cut(s)	305, 396
Bsp120I	GGGCCC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	259, 398
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	305, 396
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 83, 158
BstNI	CCWGG	1 cut(s)	27
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	2 cut(s)	60, 159
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	3 cut(s)	32, 100, 231
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	305, 396
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	79, 303, 394, 395
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	48, 100
CviAII	CATG	2 cut(s)	45, 250
CviQI	GTAC	2 cut(s)	48, 100
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco24I	GRGCYC	2 cut(s)	259, 398
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	79
Eco91I	GGTNACC	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	394, 395
EcoO65I	GGTNACC	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	259, 398
FaeI	CATG	2 cut(s)	48, 253
FatI	CATG	2 cut(s)	44, 249
Fnu4HI	GCNGC	3 cut(s)	21, 114, 220
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	2 cut(s)	259, 398
Fsp4HI	GCNGC	3 cut(s)	21, 114, 220
FspBI	CTAG	4 cut(s)	83, 216, 377, 387
GluI	GCNGC	3 cut(s)	21, 114, 220
GsaI	CCCAGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	305, 396
HgaI	GACGC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	48, 253
HinfI	GANTC	1 cut(s)	427
HphI	GGTGA	2 cut(s)	263, 334
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	171, 197
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	20, 152, 161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 83, 158
Hsp92II	CATG	2 cut(s)	48, 253
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	28, 29
Lsp1109I	GCAGC	3 cut(s)	32, 100, 231
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	4 cut(s)	83, 216, 377, 387
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	292, 366
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	259, 398
MluCI	AATT	3 cut(s)	154, 179, 204
MmeI	TCCRAC	2 cut(s)	211, 314
MnlI	CCTC	3 cut(s)	246, 332, 385
MroXI	GAANNNNTTC	1 cut(s)	204
MseI	TTAA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	29, 83, 158
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	2 cut(s)	48, 253
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	22, 115, 221
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	25
PspEI	GGTNACC	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	396
PspOMI	GGGCCC	1 cut(s)	394
PspPI	GGNCC	4 cut(s)	79, 303, 394, 395
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	49, 101
RsaNI	GTAC	2 cut(s)	48, 100
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	3 cut(s)	21, 114, 220
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	4 cut(s)	79, 303, 394, 395
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	259, 398
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	2 cut(s)	60, 159
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	3 cut(s)	154, 179, 204
SsiI	CCGC	1 cut(s)	77
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	4 cut(s)	83, 216, 377, 387
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	9
TasI	AATT	3 cut(s)	154, 179, 204
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	20, 113, 219
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	114, 293
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	2 cut(s)	154, 204
XmnI	GAANNNNTTC	1 cut(s)	204
XspI	CTAG	4 cut(s)	83, 216, 377, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.