Rh2DG316000

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006797
Physical Location & Seq
Reverse (-)
39150589 .. 39159743
9155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG316000.1

Sequence Viewer

Length: 1080 bp
ATGCCTCTAATTTTAGTTTCAACTTATTATTGCCAACAGGAGGCTCATCCAGAATCTCACTTTAGAGTTCCTGCTATAGTGCAGGCTCTTGACAAATTGGAGCTCACACCAAAGTTCCGTGGCTCGAAGGTTATTGAACTTCAAAACTTTAGGCCAGCATCAGTGGATGACATCACAAGTGTTCATACCCAATCATATGTATCAGGCCTTGAAAAGGCTATGGATCAAGCCTCAAAAGACGGCCTTATTTTTATAGAAGGCTCTGGACCAACATATGCAACTGTTGAGACATTCCAGGAGTCACTGATTGCAGCTGGAGCAGGAATTGCCTTAATTGATTCAGTGGTAGCAGAGTCAAAGAACAGCAGGGATCCACCTACAGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATATTGCTATTGCAGCTCGTTATGCTCAGCGTGCACATGGCTTGAAGCGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCAGATATATTCTTCCTTTCAACTCACCAAGATGGGAGTTACCCTGGTACTGGAAAATTTGATGAGATAGGTCGCGGAGATGGCGAAGGAACGACACTAAATCTTCCTCTTCCAGGTGGCTCAGGTGATACTGCCATGAGAACTGTGTTTGATGATGTAATTGTGCCATGTGCTCAAAGGTTTAAGCCAGATATTATTCTCGTCTCTGCTGGGTATGATGCGCATGCATTGGATCCACTAGCAAGTTTGCAATTTACAACTGGAACATATTACATGCTAGCATCTAGCATTCAACAACTTGCCAAGGATATTTGTGGTGGTCGATGCGTGTTTTTCTTAGAAGGAGGATATAATCTCGACTCTCTTTCATATTCCGTTGCAGATTCATTTCGGGCTTTTCTTAAAGAGCCAAGTTTGGCGTCTACGTTTGACAACCCTGCCATGTTGTATGAAGAGCCATCAATGAAGGTTAAGCGGGCAATTCAGAGGGTTAAACATTTACATTCTTTGTGA

Protein Analysis

359

Amino Acids

39.06

Weight (kDa)

5.52

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 16 - 320 1.7e-90 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
Acc16I TGCGCA 1 cut(s) 789
AccI GTMKAC 1 cut(s) 989
AccII CGCG 1 cut(s) 642
AciI CCGC 2 cut(s) 642, 1042
AclWI GGATC 7 cut(s) 231, 365, 378, 560, 573, 794, 807
AcsI RAATTY 1 cut(s) 623
AcyI GRCGYC 1 cut(s) 986
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 5 cut(s) 40, 214, 380, 617, 680
AgsI TTSAA 7 cut(s) 21, 137, 143, 212, 499, 588, 860
AjnI CCWGG 4 cut(s) 294, 403, 610, 679
AluBI AGCT 3 cut(s) 103, 314, 470
AluI AGCT 3 cut(s) 103, 314, 470
Alw21I GWGCWC 3 cut(s) 105, 490, 742
Alw26I GTCTC 2 cut(s) 281, 775
Alw44I GTGCAC 1 cut(s) 486
AlwI GGATC 7 cut(s) 231, 365, 378, 560, 573, 794, 807
AoxI GGCC 3 cut(s) 152, 205, 241
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 2 cut(s) 311, 467
ApoI RAATTY 1 cut(s) 623
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 2 cut(s) 266, 428
AsuHPI GGTGA 3 cut(s) 521, 584, 704
AsuNHI GCTAGC 1 cut(s) 844
AvaII GGWCC 2 cut(s) 266, 428
BaeGI GKGCMC 1 cut(s) 490
BamHI GGATCC 3 cut(s) 370, 565, 799
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 3 cut(s) 105, 490, 742
BbvI GCAGC 2 cut(s) 323, 479
BccI CCATC 4 cut(s) 427, 593, 641, 1033
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 4 cut(s) 296, 405, 612, 681
BcoDI GTCTC 2 cut(s) 281, 775
BfaI CTAG 3 cut(s) 806, 845, 852
BfmI CTRYAG 2 cut(s) 75, 378
BisI GCNGC 2 cut(s) 312, 468
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 2 cut(s) 313, 469
Bme1390I CCNGG 4 cut(s) 296, 405, 612, 681
Bme18I GGWCC 2 cut(s) 266, 428
BmgT120I GGNCC 2 cut(s) 266, 428
BmiI GGNNCC 4 cut(s) 372, 429, 567, 801
BmrFI CCNGG 4 cut(s) 296, 405, 612, 681
BmsI GCATC 5 cut(s) 167, 541, 775, 857, 881
BmtI GCTAGC 1 cut(s) 848
BpmI CTGGAG 2 cut(s) 336, 387
Bpu10I CCTNAGC 1 cut(s) 688
Bpu1102I GCTNAGC 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 986
BsaJI CCNNGG 4 cut(s) 118, 532, 610, 870
Bsc4I CCNNNNNNNGG 5 cut(s) 40, 214, 380, 617, 680
Bse1I ACTGG 2 cut(s) 622, 832
BseBI CCWGG 4 cut(s) 296, 405, 612, 681
BseDI CCNNGG 4 cut(s) 118, 532, 610, 870
BseGI GGATG 2 cut(s) 46, 172
BseLI CCNNNNNNNGG 5 cut(s) 40, 214, 380, 617, 680
BseMII CTCAG 2 cut(s) 494, 702
BseNI ACTGG 2 cut(s) 622, 832
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 2 cut(s) 323, 479
BseYI CCCAGC 1 cut(s) 776
BsgI GTGCAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 3 cut(s) 154, 207, 243
BsiHKAI GWGCWC 3 cut(s) 105, 490, 742
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 5 cut(s) 40, 214, 380, 617, 680
BsmAI GTCTC 2 cut(s) 281, 775
BsmBI CGTCTC 1 cut(s) 775
BsmFI GGGAC 1 cut(s) 556
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 3 cut(s) 154, 207, 243
Bsp1286I GDGCHC 3 cut(s) 105, 490, 742
Bsp143I GATC 4 cut(s) 223, 370, 565, 799
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 2 cut(s) 642, 1042
BspANI GGCC 3 cut(s) 154, 207, 243
BspCNI CTCAG 2 cut(s) 493, 701
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 4 cut(s) 372, 429, 567, 801
BspOI GCTAGC 1 cut(s) 848
BspPI GGATC 7 cut(s) 231, 365, 378, 560, 573, 794, 807
BspQI GCTCTTC 1 cut(s) 1014
BsrI ACTGG 2 cut(s) 622, 832
BssECI CCNNGG 4 cut(s) 118, 532, 610, 870
BssMI GATC 4 cut(s) 223, 370, 565, 799
BssNI GRCGYC 1 cut(s) 986
BssT1I CCWWGG 1 cut(s) 870
Bst2UI CCWGG 4 cut(s) 296, 405, 612, 681
Bst4CI ACNGT 2 cut(s) 283, 712
Bst6I CTCTTC 2 cut(s) 681, 1014
BstACI GRCGYC 1 cut(s) 986
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 6 cut(s) 84, 156, 486, 792, 846, 1044
BstDEI CTNAG 3 cut(s) 480, 688, 904
BstDSI CCRYGG 2 cut(s) 118, 532
BstENI CCTNNNNNAGG 2 cut(s) 212, 678
BstF5I GGATG 2 cut(s) 46, 172
BstFNI CGCG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 4 cut(s) 226, 373, 568, 802
BstMAI GTCTC 2 cut(s) 281, 775
BstMBI GATC 4 cut(s) 223, 370, 565, 799
BstMWI GCNNNNNNNGC 6 cut(s) 317, 326, 467, 476, 485, 648
BstNI CCWGG 4 cut(s) 296, 405, 612, 681
BstNSI RCATGY 2 cut(s) 794, 844
BstSCI CCNGG 4 cut(s) 294, 403, 610, 679
BstSFI CTRYAG 2 cut(s) 75, 378
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 323, 479
BstX2I RGATCY 3 cut(s) 370, 565, 799
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 3 cut(s) 370, 565, 799
BsuRI GGCC 3 cut(s) 154, 207, 243
BtgI CCRYGG 2 cut(s) 118, 532
BtsCI GGATG 2 cut(s) 46, 172
BtsIMutI CAGTG 3 cut(s) 168, 302, 348
Cac8I GCNNGC 6 cut(s) 84, 156, 486, 792, 846, 1044
CfoI GCGC 1 cut(s) 790
Cfr13I GGNCC 2 cut(s) 266, 428
CseI GACGC 1 cut(s) 975
Csp6I GTAC 1 cut(s) 615
CviAII CATG 7 cut(s) 413, 491, 703, 735, 791, 841, 1009
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 3 cut(s) 480, 688, 904
DpnI GATC 4 cut(s) 225, 372, 567, 801
DpnII GATC 4 cut(s) 223, 370, 565, 799
Eam1104I CTCTTC 2 cut(s) 681, 1014
EarI CTCTTC 2 cut(s) 681, 1014
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 870
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 266, 428
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 2 cut(s) 212, 678
EcoRII CCWGG 4 cut(s) 294, 403, 610, 679
EcoT14I CCWWGG 1 cut(s) 870
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 775
FaeI CATG 7 cut(s) 416, 494, 706, 738, 794, 844, 1012
FalI AAGNNNNNCTT 4 cut(s) 228, 260, 491, 523
FaqI GGGAC 1 cut(s) 556
FatI CATG 7 cut(s) 412, 490, 702, 734, 790, 840, 1008
FauI CCCGC 1 cut(s) 1035
FauNDI CATATG 2 cut(s) 196, 274
FblI GTMKAC 1 cut(s) 989
Fnu4HI GCNGC 2 cut(s) 312, 468
FokI GGATG 2 cut(s) 33, 179
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 312, 468
FspAI RTGCGCAY 1 cut(s) 789
FspBI CTAG 3 cut(s) 806, 845, 852
FspI TGCGCA 1 cut(s) 789
GlaI GCGC 1 cut(s) 789
GluI GCNGC 2 cut(s) 312, 468
GsaI CCCAGC 1 cut(s) 780
GsuI CTGGAG 2 cut(s) 336, 387
HaeIII GGCC 3 cut(s) 154, 207, 243
HgaI GACGC 1 cut(s) 975
HhaI GCGC 1 cut(s) 790
Hin1I GRCGYC 1 cut(s) 986
Hin1II CATG 7 cut(s) 416, 494, 706, 738, 794, 844, 1012
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HinfI GANTC 6 cut(s) 53, 299, 338, 353, 926, 950
HphI GGTGA 3 cut(s) 521, 584, 704
Hpy166II GTNNAC 3 cut(s) 488, 529, 990
Hpy188I TCNGA 2 cut(s) 432, 1053
Hpy188III TCNNGA 5 cut(s) 50, 89, 264, 569, 923
Hpy8I GTNNAC 3 cut(s) 488, 529, 990
HpyAV CCTTC 5 cut(s) 121, 251, 647, 902, 1027
HpyCH4III ACNGT 2 cut(s) 283, 712
HpyCH4IV ACGT 1 cut(s) 992
HpyCH4V TGCA 9 cut(s) 82, 278, 311, 416, 467, 488, 794, 817, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 317, 326, 467, 476, 485, 648
HpyF3I CTNAG 3 cut(s) 480, 688, 904
HpySE526I ACGT 1 cut(s) 992
Hsp92I GRCGYC 1 cut(s) 986
Hsp92II CATG 7 cut(s) 416, 494, 706, 738, 794, 844, 1012
HspAI GCGC 1 cut(s) 788
Kzo9I GATC 4 cut(s) 223, 370, 565, 799
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 2 cut(s) 100, 317
Lsp1109I GCAGC 2 cut(s) 323, 479
LweI GCATC 5 cut(s) 167, 541, 775, 857, 881
MaeI CTAG 3 cut(s) 806, 845, 852
MaeII ACGT 1 cut(s) 992
MaeIII GTNAC 2 cut(s) 300, 605
MalI GATC 4 cut(s) 225, 372, 567, 801
MboI GATC 4 cut(s) 223, 370, 565, 799
MboII GAAGA 4 cut(s) 571, 662, 668, 1031
MflI RGATCY 3 cut(s) 370, 565, 799
MhlI GDGCHC 3 cut(s) 105, 490, 742
MlyI GAGTC 3 cut(s) 308, 362, 920
MnlI CCTC 8 cut(s) 15, 34, 241, 411, 556, 684, 905, 1047
Mph1103I ATGCAT 1 cut(s) 796
MseI TTAA 6 cut(s) 332, 392, 750, 969, 1038, 1059
MslI CAYNNNNRTG 2 cut(s) 537, 597
MspA1I CMGCKG 1 cut(s) 314
MspR9I CCNGG 4 cut(s) 296, 405, 612, 681
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 4 cut(s) 296, 405, 612, 681
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 317, 326, 467, 476, 485, 648
NdeI CATATG 2 cut(s) 196, 274
NdeII GATC 4 cut(s) 223, 370, 565, 799
NheI GCTAGC 1 cut(s) 844
NlaIII CATG 7 cut(s) 416, 494, 706, 738, 794, 844, 1012
NlaIV GGNNCC 4 cut(s) 372, 429, 567, 801
NmuCI GTSAC 1 cut(s) 300
NsbI TGCGCA 1 cut(s) 789
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 2 cut(s) 794, 844
PaeI GCATGC 1 cut(s) 794
PceI AGGCCT 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 1014
PctI GAATGC 1 cut(s) 855
PfeI GAWTC 3 cut(s) 53, 338, 950
PfoI TCCNGGA 2 cut(s) 294, 403
PkrI GCNGC 2 cut(s) 313, 469
PleI GAGTC 3 cut(s) 307, 361, 920
PpsI GAGTC 3 cut(s) 307, 361, 920
PsiI TTATAA 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 4 cut(s) 294, 403, 610, 679
PspFI CCCAGC 1 cut(s) 776
PspGI CCWGG 4 cut(s) 294, 403, 610, 679
PspN4I GGNNCC 4 cut(s) 372, 429, 567, 801
PspPI GGNCC 2 cut(s) 266, 428
PsuI RGATCY 3 cut(s) 370, 565, 799
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 2 cut(s) 537, 597
SacI GAGCTC 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 1014
SaqAI TTAA 6 cut(s) 332, 392, 750, 969, 1038, 1059
SatI GCNGC 2 cut(s) 312, 468
Sau3AI GATC 4 cut(s) 223, 370, 565, 799
Sau96I GGNCC 2 cut(s) 266, 428
SchI GAGTC 3 cut(s) 308, 362, 920
ScrFI CCNGG 4 cut(s) 296, 405, 612, 681
SduI GDGCHC 3 cut(s) 105, 490, 742
SfaNI GCATC 5 cut(s) 167, 541, 775, 857, 881
SfcI CTRYAG 2 cut(s) 75, 378
SinI GGWCC 2 cut(s) 266, 428
SmiMI CAYNNNNRTG 2 cut(s) 537, 597
SphI GCATGC 1 cut(s) 794
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 2 cut(s) 642, 1042
SspI AATATT 1 cut(s) 457
SspMI CTAG 3 cut(s) 806, 845, 852
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 4 cut(s) 294, 403, 610, 679
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 2 cut(s) 283, 712
TaiI ACGT 1 cut(s) 995
TaqI TCGA 3 cut(s) 125, 889, 924
TfiI GAWTC 3 cut(s) 53, 338, 950
Tru1I TTAA 6 cut(s) 332, 392, 750, 969, 1038, 1059
Tru9I TTAA 6 cut(s) 332, 392, 750, 969, 1038, 1059
TscAI CASTG 3 cut(s) 168, 309, 348
TseFI GTSAC 1 cut(s) 300
TseI GCWGC 2 cut(s) 311, 467
Tsp45I GTSAC 1 cut(s) 300
TspDTI ATGAA 5 cut(s) 173, 924, 942, 1032, 1046
TspGWI ACGGA 2 cut(s) 107, 931
TspRI CASTG 3 cut(s) 168, 309, 348
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 2 cut(s) 266, 428
XagI CCTNNNNNAGG 2 cut(s) 212, 678
XapI RAATTY 1 cut(s) 623
XceI RCATGY 2 cut(s) 794, 844
XmiI GTMKAC 1 cut(s) 989
XspI CTAG 3 cut(s) 806, 845, 852
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.