RLG00000018632

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006797
Physical Location & Seq
Reverse (-)
33026742 .. 33035924
9183 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018632

Sequence Viewer

Length: 1230 bp
ATGGACCTCCTTTCAGTTCCTTCTTCGCCATCTTTGGCTGGGAATGTGTTGTTTTTGGCACGGCAGCGTTTTTGCAACTGGAGGAGTCCTGAAAGACTTCACTTGGATGCAATATTTGCAACAGATGGAATTTTGTATAAGAATTTGCGAAGAGGAAGGGGATGTTTCTCCAAAACAACAGAAGCTTCTAGTTCTTTTTCAAATGGTACTGGAGAAAGTCCATGCATACCCGTTAATACAAAACCAAGTGATGCACGTATAATTTATGCTGTAGCTCCTGCCATGGGTCATAACCAGGAGGCTCATCCAGAATCTCACTTTAGAGTTCCTGCTATAGTGCAGGCTCTTGACAAATTGGAGCTCACACCAAAGTTCCGTGGCTCGAAGGTTATTGAACTTCAAAACTTTAGGCCAGCATCAGTGGATGACATCACAAGTGTTCATACCCAATCATATGTATCAGGCCTTGAAAAGGCTATGGATCAAGCCTCAAAAGACGCAGAGTCAAAGAACAGCAGGGATCCACCTACAGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATGTTGCTATTGCAGCTCGTTATGCTCAGCGTGCACATGGCTTGAAGCGTGTCTTTATAATTGATTTTGACGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCAGATATATTCTTCCTTTCAACTCACCAAGATGGGAGTTACCCCGGTACTGGAAAATTTGATGAGATAGGTCGCGGAGATGGCGAAGGAACGACACTGAATCTTCCTCTACCAGGTGGCTCAGGTGATACTGCCATGAGAACTGTGTTTGATGAAGTAATTGTGCCATGTGCTCAAAGGTTTAAGCCAGATATTATTCTCGTCTCTGCTGGGTATGATGCGCATGCATTGGATCCACTTGCAAGTTTGCAATTTACAACTGGAACATATTACATGCTAGCATCTAGTATTCAACAACTTGCCAAGGATATTTGTGGTGGTCGATGCGTGTTTTTCTTAGAAGGAGGATATAATCTCGACTCTCTTTCATATTCCGTTGCAGATTCATTTCGTGCTTTTCTTAAAGAGCCAAGTTTGGCGTCTACGTTTGACAACCCTGCCATGTTGTATGAAGAGCCATCAATGAAGGTTAAGCAGGCAATTCAGAGGGTTAAACATTTACATTCATTGTGA

Protein Analysis

410

Amino Acids

44.67

Weight (kDa)

6.39

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 177 - 370 1.3e-75 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 662
Acc16I TGCGCA 1 cut(s) 939
AccI GTMKAC 1 cut(s) 1139
AccII CGCG 1 cut(s) 792
AciI CCGC 1 cut(s) 792
AclWI GGATC 7 cut(s) 489, 515, 528, 710, 723, 944, 957
AcsI RAATTY 3 cut(s) 129, 142, 773
AcyI GRCGYC 1 cut(s) 1136
AfaI GTAC 2 cut(s) 208, 766
AfiI CCNNNNNNNGG 5 cut(s) 284, 472, 530, 767, 830
AgsI TTSAA 7 cut(s) 201, 395, 401, 470, 649, 738, 1010
AhdI GACNNNNNGTC 1 cut(s) 502
AjnI CCWGG 3 cut(s) 294, 553, 829
AluBI AGCT 4 cut(s) 185, 275, 361, 620
AluI AGCT 4 cut(s) 185, 275, 361, 620
Alw21I GWGCWC 3 cut(s) 363, 640, 892
Alw26I GTCTC 1 cut(s) 925
Alw44I GTGCAC 1 cut(s) 636
AlwI GGATC 7 cut(s) 489, 515, 528, 710, 723, 944, 957
AoxI GGCC 2 cut(s) 410, 463
ApaLI GTGCAC 1 cut(s) 636
ApeKI GCWGC 2 cut(s) 64, 617
ApoI RAATTY 3 cut(s) 129, 142, 773
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 940
AspS9I GGNCC 2 cut(s) 4, 578
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 3 cut(s) 671, 734, 854
AsuNHI GCTAGC 1 cut(s) 994
AvaII GGWCC 2 cut(s) 4, 578
BaeGI GKGCMC 1 cut(s) 640
BamHI GGATCC 3 cut(s) 520, 715, 949
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 363, 640, 892
BbvI GCAGC 2 cut(s) 76, 629
BccI CCATC 6 cut(s) 37, 119, 577, 743, 791, 1183
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 296, 555, 831
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 1 cut(s) 925
BfaI CTAG 3 cut(s) 189, 995, 1002
BfmI CTRYAG 3 cut(s) 270, 333, 528
BisI GCNGC 2 cut(s) 65, 618
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 2 cut(s) 66, 619
Bme1390I CCNGG 4 cut(s) 296, 555, 762, 831
Bme18I GGWCC 2 cut(s) 4, 578
BmeRI GACNNNNNGTC 1 cut(s) 502
BmgT120I GGNCC 2 cut(s) 4, 578
BmiI GGNNCC 4 cut(s) 522, 579, 717, 951
BmrFI CCNGG 4 cut(s) 296, 555, 762, 831
BmsI GCATC 7 cut(s) 97, 241, 425, 691, 925, 1007, 1031
BmtI GCTAGC 1 cut(s) 998
BpmI CTGGAG 3 cut(s) 100, 231, 537
Bpu10I CCTNAGC 1 cut(s) 838
Bpu1102I GCTNAGC 1 cut(s) 630
BpuMI CCSGG 1 cut(s) 762
BsaAI YACGTR 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 1136
BsaJI CCNNGG 5 cut(s) 282, 376, 682, 760, 1020
Bsc4I CCNNNNNNNGG 5 cut(s) 284, 472, 530, 767, 830
Bse1I ACTGG 4 cut(s) 83, 214, 772, 982
BseBI CCWGG 3 cut(s) 296, 555, 831
BseDI CCNNGG 5 cut(s) 282, 376, 682, 760, 1020
BseGI GGATG 4 cut(s) 112, 167, 304, 430
BseLI CCNNNNNNNGG 5 cut(s) 284, 472, 530, 767, 830
BseMII CTCAG 2 cut(s) 644, 852
BseNI ACTGG 4 cut(s) 83, 214, 772, 982
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 2 cut(s) 76, 629
BseYI CCCAGC 2 cut(s) 38, 926
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 792
BshFI GGCC 2 cut(s) 412, 465
BsiHKAI GWGCWC 3 cut(s) 363, 640, 892
BsiSI CCGG 1 cut(s) 762
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 5 cut(s) 284, 472, 530, 767, 830
BsmAI GTCTC 1 cut(s) 925
BsmBI CGTCTC 1 cut(s) 925
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 2 cut(s) 412, 465
Bsp1286I GDGCHC 3 cut(s) 363, 640, 892
Bsp143I GATC 4 cut(s) 481, 520, 715, 949
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 1 cut(s) 792
BspANI GGCC 2 cut(s) 412, 465
BspCNI CTCAG 2 cut(s) 643, 851
BspFNI CGCG 1 cut(s) 792
BspLI GGNNCC 4 cut(s) 522, 579, 717, 951
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 7 cut(s) 489, 515, 528, 710, 723, 944, 957
BspQI GCTCTTC 1 cut(s) 1164
BsrI ACTGG 4 cut(s) 83, 214, 772, 982
BssECI CCNNGG 5 cut(s) 282, 376, 682, 760, 1020
BssMI GATC 4 cut(s) 481, 520, 715, 949
BssNI GRCGYC 1 cut(s) 1136
BssT1I CCWWGG 2 cut(s) 282, 1020
Bst2UI CCWGG 3 cut(s) 296, 555, 831
Bst4CI ACNGT 1 cut(s) 862
Bst6I CTCTTC 2 cut(s) 145, 1164
BstACI GRCGYC 1 cut(s) 1136
BstAPI GCANNNNNTGC 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 257
BstC8I GCNNGC 6 cut(s) 342, 414, 636, 942, 996, 1194
BstDEI CTNAG 3 cut(s) 630, 838, 1054
BstDSI CCRYGG 3 cut(s) 282, 376, 682
BstENI CCTNNNNNAGG 2 cut(s) 470, 828
BstF5I GGATG 4 cut(s) 112, 167, 304, 430
BstFNI CGCG 1 cut(s) 792
BstHHI GCGC 1 cut(s) 940
BstKTI GATC 4 cut(s) 484, 523, 718, 952
BstMAI GTCTC 1 cut(s) 925
BstMBI GATC 4 cut(s) 481, 520, 715, 949
BstMWI GCNNNNNNNGC 5 cut(s) 116, 617, 626, 635, 798
BstNI CCWGG 3 cut(s) 296, 555, 831
BstNSI RCATGY 2 cut(s) 944, 994
BstSCI CCNGG 4 cut(s) 294, 553, 760, 829
BstSFI CTRYAG 3 cut(s) 270, 333, 528
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 2 cut(s) 76, 629
BstX2I RGATCY 3 cut(s) 520, 715, 949
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 3 cut(s) 520, 715, 949
BsuRI GGCC 2 cut(s) 412, 465
BtgI CCRYGG 3 cut(s) 282, 376, 682
BtsCI GGATG 4 cut(s) 112, 167, 304, 430
BtsIMutI CAGTG 2 cut(s) 426, 812
Cac8I GCNNGC 6 cut(s) 342, 414, 636, 942, 996, 1194
CfoI GCGC 1 cut(s) 940
Cfr13I GGNCC 2 cut(s) 4, 578
CseI GACGC 2 cut(s) 506, 1125
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 2 cut(s) 207, 765
CviAII CATG 9 cut(s) 222, 283, 563, 641, 853, 885, 941, 991, 1159
CviQI GTAC 2 cut(s) 207, 765
DdeI CTNAG 3 cut(s) 630, 838, 1054
DpnI GATC 4 cut(s) 483, 522, 717, 951
DpnII GATC 4 cut(s) 481, 520, 715, 949
DriI GACNNNNNGTC 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 145, 1164
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 2 cut(s) 145, 1164
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 282, 1020
Eco147I AGGCCT 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 4, 578
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 2 cut(s) 470, 828
EcoRII CCWGG 3 cut(s) 294, 553, 829
EcoT14I CCWWGG 2 cut(s) 282, 1020
EcoT22I ATGCAT 2 cut(s) 227, 946
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 282, 1020
Esp3I CGTCTC 1 cut(s) 925
FaeI CATG 9 cut(s) 225, 286, 566, 644, 856, 888, 944, 994, 1162
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 1 cut(s) 706
FatI CATG 9 cut(s) 221, 282, 562, 640, 852, 884, 940, 990, 1158
FauNDI CATATG 1 cut(s) 454
FblI GTMKAC 1 cut(s) 1139
Fnu4HI GCNGC 2 cut(s) 65, 618
FokI GGATG 4 cut(s) 119, 174, 291, 437
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 65, 618
FspAI RTGCGCAY 1 cut(s) 939
FspBI CTAG 3 cut(s) 189, 995, 1002
FspI TGCGCA 1 cut(s) 939
GlaI GCGC 1 cut(s) 939
GluI GCNGC 2 cut(s) 65, 618
GsaI CCCAGC 2 cut(s) 42, 930
GsuI CTGGAG 3 cut(s) 100, 231, 537
HaeIII GGCC 2 cut(s) 412, 465
HapII CCGG 1 cut(s) 762
HgaI GACGC 2 cut(s) 506, 1125
HhaI GCGC 1 cut(s) 940
Hin1I GRCGYC 1 cut(s) 1136
Hin1II CATG 9 cut(s) 225, 286, 566, 644, 856, 888, 944, 994, 1162
Hin6I GCGC 1 cut(s) 938
HinP1I GCGC 1 cut(s) 938
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 6 cut(s) 85, 311, 503, 817, 1076, 1100
HpaII CCGG 1 cut(s) 762
HphI GGTGA 3 cut(s) 671, 734, 854
Hpy166II GTNNAC 3 cut(s) 638, 679, 1140
Hpy188I TCNGA 2 cut(s) 582, 1203
Hpy188III TCNNGA 5 cut(s) 89, 308, 347, 719, 1073
Hpy8I GTNNAC 3 cut(s) 638, 679, 1140
HpyAV CCTTC 6 cut(s) 30, 150, 379, 797, 1052, 1177
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4IV ACGT 3 cut(s) 256, 675, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 617, 626, 635, 798
HpyF3I CTNAG 3 cut(s) 630, 838, 1054
HpySE526I ACGT 3 cut(s) 256, 675, 1142
Hsp92I GRCGYC 1 cut(s) 1136
Hsp92II CATG 9 cut(s) 225, 286, 566, 644, 856, 888, 944, 994, 1162
HspAI GCGC 1 cut(s) 938
Kzo9I GATC 4 cut(s) 481, 520, 715, 949
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 2 cut(s) 280, 358
Lsp1109I GCAGC 2 cut(s) 76, 629
LweI GCATC 7 cut(s) 97, 241, 425, 691, 925, 1007, 1031
MabI ACCWGGT 1 cut(s) 829
MaeI CTAG 3 cut(s) 189, 995, 1002
MaeII ACGT 3 cut(s) 256, 675, 1142
MaeIII GTNAC 1 cut(s) 755
MalI GATC 4 cut(s) 483, 522, 717, 951
MboI GATC 4 cut(s) 481, 520, 715, 949
MboII GAAGA 5 cut(s) 15, 162, 721, 812, 1181
MflI RGATCY 3 cut(s) 520, 715, 949
MhlI GDGCHC 3 cut(s) 363, 640, 892
MlyI GAGTC 3 cut(s) 94, 512, 1070
Mph1103I ATGCAT 2 cut(s) 227, 946
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 6 cut(s) 234, 542, 900, 1119, 1188, 1209
MslI CAYNNNNRTG 3 cut(s) 105, 687, 747
MspI CCGG 1 cut(s) 762
MspR9I CCNGG 4 cut(s) 296, 555, 762, 831
MvaI CCWGG 3 cut(s) 296, 555, 831
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 5 cut(s) 116, 617, 626, 635, 798
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 1 cut(s) 282
NdeI CATATG 1 cut(s) 454
NdeII GATC 4 cut(s) 481, 520, 715, 949
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 9 cut(s) 225, 286, 566, 644, 856, 888, 944, 994, 1162
NlaIV GGNNCC 4 cut(s) 522, 579, 717, 951
NsbI TGCGCA 1 cut(s) 939
NsiI ATGCAT 2 cut(s) 227, 946
NspI RCATGY 2 cut(s) 944, 994
PaeI GCATGC 1 cut(s) 944
PceI AGGCCT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 1164
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 3 cut(s) 311, 817, 1100
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 2 cut(s) 66, 619
PleI GAGTC 3 cut(s) 93, 511, 1070
PpsI GAGTC 3 cut(s) 93, 511, 1070
Ppu21I YACGTR 1 cut(s) 257
PsiI TTATAA 1 cut(s) 662
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 294, 553, 829
PspFI CCCAGC 2 cut(s) 38, 926
PspGI CCWGG 3 cut(s) 294, 553, 829
PspN4I GGNNCC 4 cut(s) 522, 579, 717, 951
PspPI GGNCC 2 cut(s) 4, 578
PsuI RGATCY 3 cut(s) 520, 715, 949
RsaI GTAC 2 cut(s) 208, 766
RsaNI GTAC 2 cut(s) 207, 765
RseI CAYNNNNRTG 3 cut(s) 105, 687, 747
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 6 cut(s) 234, 542, 900, 1119, 1188, 1209
SatI GCNGC 2 cut(s) 65, 618
Sau3AI GATC 4 cut(s) 481, 520, 715, 949
Sau96I GGNCC 2 cut(s) 4, 578
SchI GAGTC 3 cut(s) 94, 512, 1070
ScrFI CCNGG 4 cut(s) 296, 555, 762, 831
SduI GDGCHC 3 cut(s) 363, 640, 892
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 7 cut(s) 97, 241, 425, 691, 925, 1007, 1031
SfcI CTRYAG 3 cut(s) 270, 333, 528
SinI GGWCC 2 cut(s) 4, 578
SmiMI CAYNNNNRTG 3 cut(s) 105, 687, 747
SphI GCATGC 1 cut(s) 944
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 1 cut(s) 792
SspI AATATT 1 cut(s) 114
SspMI CTAG 3 cut(s) 189, 995, 1002
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 4 cut(s) 294, 553, 760, 829
StyI CCWWGG 2 cut(s) 282, 1020
TaaI ACNGT 1 cut(s) 862
TaiI ACGT 3 cut(s) 259, 678, 1145
TaqI TCGA 3 cut(s) 383, 1039, 1074
TfiI GAWTC 3 cut(s) 311, 817, 1100
Tru1I TTAA 6 cut(s) 234, 542, 900, 1119, 1188, 1209
Tru9I TTAA 6 cut(s) 234, 542, 900, 1119, 1188, 1209
TscAI CASTG 2 cut(s) 426, 819
TseI GCWGC 2 cut(s) 64, 617
TspDTI ATGAA 7 cut(s) 431, 885, 1074, 1092, 1182, 1196, 1212
TspGWI ACGGA 2 cut(s) 365, 1081
TspRI CASTG 2 cut(s) 426, 819
VneI GTGCAC 1 cut(s) 636
VpaK11BI GGWCC 2 cut(s) 4, 578
XagI CCTNNNNNAGG 2 cut(s) 470, 828
XapI RAATTY 3 cut(s) 129, 142, 773
XceI RCATGY 2 cut(s) 944, 994
XmiI GTMKAC 1 cut(s) 1139
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 3 cut(s) 189, 995, 1002
Zsp2I ATGCAT 2 cut(s) 227, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.