Rroxscaffold_2G00122220

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006797
Physical Location & Seq
Forward (+)
55196750 .. 55206373
9624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122220.1

Sequence Viewer

Length: 1359 bp
ATGACAGGGAAGCAGCATTTTGTATACTGCAAAGATTCTGAAGATAACTGTTCTGGTTTAGGGAATGTGTTGTTTTTGGCACGGCAGCGTTTTTGCAACTGGAAGAGTCCTGAAAGGCTTCACTTGGATGCAATATTTGCAACAGATGGAATTTTGTATAAGAATTTGCGTAGAGGAAGGAGATGTTTCTCCAACACAACAGAAGCTTCTAGTTCTTTTTCAAATGGTACTGGAGAAAGTCCTTATTTACCTGTTAATACAAAATCAAGTGATGCACGTATAATTTATGCAGTAGCTCCTGCCATGGGTCATAACCAGGAGGCTCATCCAGAATCTCACTTTAGAGTTCCTGCTATAGTGCAGGCTCTTGACAAATTGGAGCTCACACCAAAGTTCCGTGGCTCGAAGGTTATTGAACTTCAAAACTTCATGCCAGCAACCGTGGATGACATCACAAGTGTTCATACCCAATCATATGTATCAGGCCTTGAGAAGGCTATGGATCAAGCCTCAAAAGACGGCCTTATTTTTATAGAAGGCTCTGGACCAACATATGCAACTGTTGAGACATTCCAGGAGTCACTGATTGCAGCTGGAGCAGGAATTGCCTTAATTGATTCAGTGGTAGCAGAGTCAAAAAACAGCAGGGATCCACCTACAGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCGTTATGCTCAGCGTGCACATGGCTTGAAGCGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCAGATATATTCTTCCTTTCAACTCACCAAGATGGGAGTTACCCTGGTACTGGAAAATTTGATGAGATAGGTCGCGGAGATGGCGAAGGAACGACACTAAATCTTCCTCTACCAGGTGGCTCAGGTGATACTGCCATGAGAACTGTGTTTGATGAAGTAATTGTGCCATGTGCTCAAAGGTTTAAGCCAGATATTATTCTCGTCTCTGCTGGGTATGATGCGCATGCATTGGATCCACTTGCAAGTTTGCAATTTACAACTGGAACATATTACATGCTAGCATCTAGTATTCAACAACTTGCCAAGGATATTTGTGGTGGTCGATGCGTGTTTTTCTTAGAAGGAGGATATAATCTCGACTCTCTTTCATATTCCGTTGCAGATTCATTTCGTGCTTTTCTTAAAGAGCCAAGTTTGGCGTCTACGTTTGACAACCCTGCCATGTTGTATGAAGAGCCATCAATGAAGGTTAAGCAGGCAATTCAGAGGGTTAAACATTTACATTCTTTGTGA

Protein Analysis

452

Amino Acids

49.32

Weight (kDa)

5.92

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 109 - 413 4.6e-90 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 791
Acc16I TGCGCA 1 cut(s) 1068
AccI GTMKAC 2 cut(s) 24, 1268
AccII CGCG 1 cut(s) 921
AciI CCGC 1 cut(s) 921
AclWI GGATC 7 cut(s) 510, 644, 657, 839, 852, 1073, 1086
AcsI RAATTY 3 cut(s) 150, 163, 902
AcuI CTGAAG 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 1265
AfaI GTAC 2 cut(s) 229, 895
AfiI CCNNNNNNNGG 5 cut(s) 305, 493, 659, 896, 959
AgsI TTSAA 6 cut(s) 222, 416, 422, 778, 867, 1139
AjnI CCWGG 5 cut(s) 315, 573, 682, 889, 958
AluBI AGCT 5 cut(s) 206, 296, 382, 593, 749
AluI AGCT 5 cut(s) 206, 296, 382, 593, 749
Alw21I GWGCWC 3 cut(s) 384, 769, 1021
Alw26I GTCTC 2 cut(s) 560, 1054
Alw44I GTGCAC 1 cut(s) 765
AlwI GGATC 7 cut(s) 510, 644, 657, 839, 852, 1073, 1086
AoxI GGCC 2 cut(s) 484, 520
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 4 cut(s) 13, 85, 590, 746
ApoI RAATTY 3 cut(s) 150, 163, 902
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 2 cut(s) 545, 707
AsuHPI GGTGA 3 cut(s) 800, 863, 983
AsuNHI GCTAGC 1 cut(s) 1123
AvaII GGWCC 2 cut(s) 545, 707
BaeGI GKGCMC 1 cut(s) 769
BamHI GGATCC 3 cut(s) 649, 844, 1078
BanII GRGCYC 1 cut(s) 384
Bbv12I GWGCWC 3 cut(s) 384, 769, 1021
BbvI GCAGC 4 cut(s) 25, 97, 602, 758
BccI CCATC 5 cut(s) 140, 706, 872, 920, 1312
BceAI ACGGC 2 cut(s) 98, 535
BciT130I CCWGG 5 cut(s) 317, 575, 684, 891, 960
BcoDI GTCTC 2 cut(s) 560, 1054
BfaI CTAG 3 cut(s) 210, 1124, 1131
BfmI CTRYAG 2 cut(s) 354, 657
BisI GCNGC 4 cut(s) 14, 86, 591, 747
BlpI GCTNAGC 1 cut(s) 759
BlsI GCNGC 4 cut(s) 15, 87, 592, 748
Bme1390I CCNGG 5 cut(s) 317, 575, 684, 891, 960
Bme18I GGWCC 2 cut(s) 545, 707
BmgT120I GGNCC 2 cut(s) 545, 707
BmiI GGNNCC 4 cut(s) 651, 708, 846, 1080
BmrFI CCNGG 5 cut(s) 317, 575, 684, 891, 960
BmsI GCATC 6 cut(s) 118, 262, 820, 1054, 1136, 1160
BmtI GCTAGC 1 cut(s) 1127
BpmI CTGGAG 3 cut(s) 252, 615, 666
Bpu10I CCTNAGC 1 cut(s) 967
Bpu1102I GCTNAGC 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 1265
BsaJI CCNNGG 6 cut(s) 303, 397, 441, 811, 889, 1149
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 493, 659, 896, 959
Bse1I ACTGG 4 cut(s) 104, 235, 901, 1111
BseBI CCWGG 5 cut(s) 317, 575, 684, 891, 960
BseDI CCNNGG 6 cut(s) 303, 397, 441, 811, 889, 1149
BseGI GGATG 3 cut(s) 133, 325, 451
BseLI CCNNNNNNNGG 5 cut(s) 305, 493, 659, 896, 959
BseMII CTCAG 2 cut(s) 773, 981
BseNI ACTGG 4 cut(s) 104, 235, 901, 1111
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 4 cut(s) 25, 97, 602, 758
BseYI CCCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 921
BshFI GGCC 2 cut(s) 486, 522
BsiHKAI GWGCWC 3 cut(s) 384, 769, 1021
BslFI GGGAC 1 cut(s) 835
BslI CCNNNNNNNGG 5 cut(s) 305, 493, 659, 896, 959
BsmAI GTCTC 2 cut(s) 560, 1054
BsmBI CGTCTC 1 cut(s) 1054
BsmFI GGGAC 1 cut(s) 835
BsnI GGCC 2 cut(s) 486, 522
Bsp1286I GDGCHC 3 cut(s) 384, 769, 1021
Bsp143I GATC 4 cut(s) 502, 649, 844, 1078
Bsp1720I GCTNAGC 1 cut(s) 759
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 1 cut(s) 921
BspANI GGCC 2 cut(s) 486, 522
BspCNI CTCAG 2 cut(s) 772, 980
BspFNI CGCG 1 cut(s) 921
BspLI GGNNCC 4 cut(s) 651, 708, 846, 1080
BspOI GCTAGC 1 cut(s) 1127
BspPI GGATC 7 cut(s) 510, 644, 657, 839, 852, 1073, 1086
BspQI GCTCTTC 1 cut(s) 1293
BsrI ACTGG 4 cut(s) 104, 235, 901, 1111
BssECI CCNNGG 6 cut(s) 303, 397, 441, 811, 889, 1149
BssMI GATC 4 cut(s) 502, 649, 844, 1078
BssNAI GTATAC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 1265
BssT1I CCWWGG 2 cut(s) 303, 1149
Bst1107I GTATAC 1 cut(s) 25
Bst2UI CCWGG 5 cut(s) 317, 575, 684, 891, 960
Bst4CI ACNGT 4 cut(s) 50, 442, 562, 991
Bst6I CTCTTC 2 cut(s) 98, 1293
BstACI GRCGYC 1 cut(s) 1265
BstAPI GCANNNNNTGC 2 cut(s) 137, 605
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 6 cut(s) 363, 435, 765, 1071, 1125, 1323
BstDEI CTNAG 3 cut(s) 759, 967, 1183
BstDSI CCRYGG 4 cut(s) 303, 397, 441, 811
BstENI CCTNNNNNAGG 2 cut(s) 491, 957
BstF5I GGATG 3 cut(s) 133, 325, 451
BstFNI CGCG 1 cut(s) 921
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 4 cut(s) 505, 652, 847, 1081
BstMAI GTCTC 2 cut(s) 560, 1054
BstMBI GATC 4 cut(s) 502, 649, 844, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 137, 596, 605, 746, 755, 764, 927
BstNI CCWGG 5 cut(s) 317, 575, 684, 891, 960
BstNSI RCATGY 2 cut(s) 1073, 1123
BstSCI CCNGG 5 cut(s) 315, 573, 682, 889, 958
BstSFI CTRYAG 2 cut(s) 354, 657
BstSLI GKGCMC 1 cut(s) 769
BstUI CGCG 1 cut(s) 921
BstV1I GCAGC 4 cut(s) 25, 97, 602, 758
BstX2I RGATCY 3 cut(s) 649, 844, 1078
BstXI CCANNNNNNTGG 1 cut(s) 818
BstYI RGATCY 3 cut(s) 649, 844, 1078
BstZ17I GTATAC 1 cut(s) 25
BsuRI GGCC 2 cut(s) 486, 522
BtgI CCRYGG 4 cut(s) 303, 397, 441, 811
BtsCI GGATG 3 cut(s) 133, 325, 451
BtsIMutI CAGTG 2 cut(s) 581, 627
Cac8I GCNNGC 6 cut(s) 363, 435, 765, 1071, 1125, 1323
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 2 cut(s) 545, 707
CseI GACGC 1 cut(s) 1254
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 2 cut(s) 228, 894
CviAII CATG 9 cut(s) 304, 430, 692, 770, 982, 1014, 1070, 1120, 1288
CviQI GTAC 2 cut(s) 228, 894
DdeI CTNAG 3 cut(s) 759, 967, 1183
DpnI GATC 4 cut(s) 504, 651, 846, 1080
DpnII GATC 4 cut(s) 502, 649, 844, 1078
Eam1104I CTCTTC 2 cut(s) 98, 1293
EarI CTCTTC 2 cut(s) 98, 1293
Ecl136II GAGCTC 1 cut(s) 382
Eco130I CCWWGG 2 cut(s) 303, 1149
Eco147I AGGCCT 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 384
Eco47I GGWCC 2 cut(s) 545, 707
Eco53kI GAGCTC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 382
EcoNI CCTNNNNNAGG 2 cut(s) 491, 957
EcoRII CCWGG 5 cut(s) 315, 573, 682, 889, 958
EcoT14I CCWWGG 2 cut(s) 303, 1149
EcoT22I ATGCAT 1 cut(s) 1075
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 303, 1149
Esp3I CGTCTC 1 cut(s) 1054
FaeI CATG 9 cut(s) 307, 433, 695, 773, 985, 1017, 1073, 1123, 1291
FalI AAGNNNNNCTT 4 cut(s) 507, 539, 770, 802
FaqI GGGAC 1 cut(s) 835
FatI CATG 9 cut(s) 303, 429, 691, 769, 981, 1013, 1069, 1119, 1287
FauNDI CATATG 2 cut(s) 475, 553
FblI GTMKAC 2 cut(s) 24, 1268
Fnu4HI GCNGC 4 cut(s) 14, 86, 591, 747
FokI GGATG 3 cut(s) 140, 312, 458
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 4 cut(s) 14, 86, 591, 747
FspAI RTGCGCAY 1 cut(s) 1068
FspBI CTAG 3 cut(s) 210, 1124, 1131
FspI TGCGCA 1 cut(s) 1068
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 4 cut(s) 14, 86, 591, 747
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 3 cut(s) 252, 615, 666
HaeIII GGCC 2 cut(s) 486, 522
HgaI GACGC 1 cut(s) 1254
HhaI GCGC 1 cut(s) 1069
Hin1I GRCGYC 1 cut(s) 1265
Hin1II CATG 9 cut(s) 307, 433, 695, 773, 985, 1017, 1073, 1123, 1291
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 8 cut(s) 35, 106, 332, 578, 617, 632, 1205, 1229
HphI GGTGA 3 cut(s) 800, 863, 983
Hpy166II GTNNAC 4 cut(s) 25, 767, 808, 1269
Hpy188I TCNGA 3 cut(s) 40, 711, 1332
Hpy188III TCNNGA 6 cut(s) 110, 329, 368, 543, 848, 1202
Hpy8I GTNNAC 4 cut(s) 25, 767, 808, 1269
HpyAV CCTTC 7 cut(s) 171, 400, 487, 530, 926, 1181, 1306
HpyCH4III ACNGT 4 cut(s) 50, 442, 562, 991
HpyCH4IV ACGT 2 cut(s) 277, 1271
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 596, 605, 746, 755, 764, 927
HpyF3I CTNAG 3 cut(s) 759, 967, 1183
HpySE526I ACGT 2 cut(s) 277, 1271
Hsp92I GRCGYC 1 cut(s) 1265
Hsp92II CATG 9 cut(s) 307, 433, 695, 773, 985, 1017, 1073, 1123, 1291
HspAI GCGC 1 cut(s) 1067
Kzo9I GATC 4 cut(s) 502, 649, 844, 1078
LguI GCTCTTC 1 cut(s) 1293
LmnI GCTCC 3 cut(s) 301, 379, 596
Lsp1109I GCAGC 4 cut(s) 25, 97, 602, 758
LweI GCATC 6 cut(s) 118, 262, 820, 1054, 1136, 1160
MabI ACCWGGT 1 cut(s) 958
MaeI CTAG 3 cut(s) 210, 1124, 1131
MaeII ACGT 2 cut(s) 277, 1271
MaeIII GTNAC 2 cut(s) 579, 884
MalI GATC 4 cut(s) 504, 651, 846, 1080
MboI GATC 4 cut(s) 502, 649, 844, 1078
MboII GAAGA 5 cut(s) 53, 115, 850, 941, 1310
MfeI CAATTG 1 cut(s) 741
MflI RGATCY 3 cut(s) 649, 844, 1078
MhlI GDGCHC 3 cut(s) 384, 769, 1021
MlyI GAGTC 4 cut(s) 115, 587, 641, 1199
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 8 cut(s) 167, 313, 520, 690, 835, 963, 1184, 1326
Mph1103I ATGCAT 1 cut(s) 1075
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 7 cut(s) 255, 611, 671, 1029, 1248, 1317, 1338
MslI CAYNNNNRTG 3 cut(s) 126, 816, 876
MspA1I CMGCKG 1 cut(s) 593
MspR9I CCNGG 5 cut(s) 317, 575, 684, 891, 960
MunI CAATTG 1 cut(s) 741
MvaI CCWGG 5 cut(s) 317, 575, 684, 891, 960
MvnI CGCG 1 cut(s) 921
MwoI GCNNNNNNNGC 7 cut(s) 137, 596, 605, 746, 755, 764, 927
NcoI CCATGG 1 cut(s) 303
NdeI CATATG 2 cut(s) 475, 553
NdeII GATC 4 cut(s) 502, 649, 844, 1078
NheI GCTAGC 1 cut(s) 1123
NlaIII CATG 9 cut(s) 307, 433, 695, 773, 985, 1017, 1073, 1123, 1291
NlaIV GGNNCC 4 cut(s) 651, 708, 846, 1080
NmuCI GTSAC 1 cut(s) 579
NsbI TGCGCA 1 cut(s) 1068
NsiI ATGCAT 1 cut(s) 1075
NspI RCATGY 2 cut(s) 1073, 1123
PaeI GCATGC 1 cut(s) 1073
PceI AGGCCT 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 1293
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 4 cut(s) 35, 332, 617, 1229
PfoI TCCNGGA 2 cut(s) 573, 682
PkrI GCNGC 4 cut(s) 15, 87, 592, 748
PleI GAGTC 4 cut(s) 114, 586, 640, 1199
PpsI GAGTC 4 cut(s) 114, 586, 640, 1199
Ppu21I YACGTR 1 cut(s) 278
PsiI TTATAA 1 cut(s) 791
Psp124BI GAGCTC 1 cut(s) 384
Psp6I CCWGG 5 cut(s) 315, 573, 682, 889, 958
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 5 cut(s) 315, 573, 682, 889, 958
PspN4I GGNNCC 4 cut(s) 651, 708, 846, 1080
PspPI GGNCC 2 cut(s) 545, 707
PsuI RGATCY 3 cut(s) 649, 844, 1078
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 2 cut(s) 229, 895
RsaNI GTAC 2 cut(s) 228, 894
RseI CAYNNNNRTG 3 cut(s) 126, 816, 876
SacI GAGCTC 1 cut(s) 384
SapI GCTCTTC 1 cut(s) 1293
SaqAI TTAA 7 cut(s) 255, 611, 671, 1029, 1248, 1317, 1338
SatI GCNGC 4 cut(s) 14, 86, 591, 747
Sau3AI GATC 4 cut(s) 502, 649, 844, 1078
Sau96I GGNCC 2 cut(s) 545, 707
SchI GAGTC 4 cut(s) 115, 587, 641, 1199
ScrFI CCNGG 5 cut(s) 317, 575, 684, 891, 960
SduI GDGCHC 3 cut(s) 384, 769, 1021
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 6 cut(s) 118, 262, 820, 1054, 1136, 1160
SfcI CTRYAG 2 cut(s) 354, 657
SinI GGWCC 2 cut(s) 545, 707
SmiMI CAYNNNNRTG 3 cut(s) 126, 816, 876
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SphI GCATGC 1 cut(s) 1073
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 1 cut(s) 921
SspI AATATT 2 cut(s) 135, 736
SspMI CTAG 3 cut(s) 210, 1124, 1131
SstI GAGCTC 1 cut(s) 384
StuI AGGCCT 1 cut(s) 486
StyD4I CCNGG 5 cut(s) 315, 573, 682, 889, 958
StyI CCWWGG 2 cut(s) 303, 1149
TaaI ACNGT 4 cut(s) 50, 442, 562, 991
TaiI ACGT 2 cut(s) 280, 1274
TaqI TCGA 3 cut(s) 404, 1168, 1203
TfiI GAWTC 4 cut(s) 35, 332, 617, 1229
Tru1I TTAA 7 cut(s) 255, 611, 671, 1029, 1248, 1317, 1338
Tru9I TTAA 7 cut(s) 255, 611, 671, 1029, 1248, 1317, 1338
TscAI CASTG 2 cut(s) 588, 627
TseFI GTSAC 1 cut(s) 579
TseI GCWGC 4 cut(s) 13, 85, 590, 746
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 7 cut(s) 418, 452, 1014, 1203, 1221, 1311, 1325
TspGWI ACGGA 2 cut(s) 386, 1210
TspRI CASTG 2 cut(s) 588, 627
VneI GTGCAC 1 cut(s) 765
VpaK11BI GGWCC 2 cut(s) 545, 707
XagI CCTNNNNNAGG 2 cut(s) 491, 957
XapI RAATTY 3 cut(s) 150, 163, 902
XceI RCATGY 2 cut(s) 1073, 1123
XmiI GTMKAC 2 cut(s) 24, 1268
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 3 cut(s) 210, 1124, 1131
Zsp2I ATGCAT 1 cut(s) 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.