FvH4_1g24510

histone deacetylase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
16350461 .. 16358929
8469 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24510.t6

Sequence Viewer

Length: 1338 bp
ATGGACCTCGTTCTAGTTACTCCTTCGCCATCTTTGGCTGGGAGTGTGTTGTTTTTGGCACGGCAGCGTTTTTGCAACTGGAAGAGTCCTGAAAGACTTCGTTTGGATGCAATATTTGCAACAGACAGAATTTTGTGTAAGAGATTGCGAAGAGGAAGGAGATGTTTCTCCAAAAGAACAGAAGCTTCTACTTCTTTTTCAGATGGTACTGGAGAAAGTCTTTATGTACCTGTTAATACAAAACCAAGTGATGCCCGTATAATTTATGCGGTAGCTCCTGCCATGGGCCATAACCAGGAAGCTCATCCAGAATCTCACTTTAGAGTTCCGGCGATAGTGCAGGCTCTGGACAAATTGGAACTCACACCAAAGTTCCGTGGCTCAAAGGTTATTGAAATTCAAAATTTTAGGCCAGCATTGGTGGATGACATAGCAAGTGTTCACACACGATCATATGTAACAGGCCTTGAAAAGGCTATGGATCAAGTGTCAAAAGATGGCCTTATTTATATAGAAGGCTCTGGACCAACATATGCAACTGTTGATACATTCCAGGAGTCACTGATTGCAGCTGGAGCAGGAATTGCCTTAATTGATTCAGTGGTAGCAGAGTCAATGAACAGCAGGGATCCACCTACAGGTTTTGCTTTGATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCAATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCGTTATGCTCAACGTGAACATGGCTTGAAGCGTGTCTTTATAATTGATTTTGATGTTCACCATGGGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCCTTTCAACTCACCAAGATGGCAGTTACCCTGGTACTGGAAAATTTGATGAGATAGGTCGTGGAGATGGCGAAGGAACGACGCTAAATCTTCCTCTACCAGGAGGCTCAGGTGATACTGCCATGAGAACTGTGTTTGATGAAGTAATTGTGCCATGTGCTCAAAGGTTTAAGCCAGATATTATTCTTGTCTCTGCTGGGTATGATGCGCATGCATTGGATCCACTTGCAAGTTTGCAGTTCACAACTGGAACATATTACATGCTAGCATCTAGCATTCAACAACTTTCCAAGGAGATGTGCGGTGGTCGATGTGTGTTCTTCTTGGAAGGAGGATATAATCTCGACTCTCTCTCATATTCCGTTGCGGATTCGTTTCGTGCTTTTCTCAAAGAGCCAAGTTTGGCTTCTACGTTTGACGACCCTGCCATGTTGTATGAAGAGCCATCATTGAAGGTTAAGCAGGCAATTCAAAGGGTTAAACATATACATTCTTTGTGA

Protein Analysis

446

Amino Acids

48.74

Weight (kDa)

6.12

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hist_deacetyl PF00850 8 - 312 7.8e-90 Histone deacetylase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 770
Acc16I TGCGCA 1 cut(s) 1047
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 3 cut(s) 269, 1140, 1205
AclWI GGATC 7 cut(s) 489, 623, 636, 818, 831, 1052, 1065
AcsI RAATTY 4 cut(s) 129, 396, 403, 881
AfaI GTAC 3 cut(s) 208, 228, 874
AfiI CCNNNNNNNGG 6 cut(s) 284, 295, 472, 638, 875, 938
AgsI TTSAA 8 cut(s) 395, 401, 470, 757, 846, 1118, 1291, 1310
AjnI CCWGG 5 cut(s) 294, 552, 661, 868, 937
AjuI GAANNNNNNNTTGG 2 cut(s) 1228, 1260
AluBI AGCT 5 cut(s) 185, 275, 302, 572, 728
AluI AGCT 5 cut(s) 185, 275, 302, 572, 728
Alw21I GWGCWC 1 cut(s) 1000
Alw26I GTCTC 1 cut(s) 1033
AlwI GGATC 7 cut(s) 489, 623, 636, 818, 831, 1052, 1065
AlwNI CAGNNNCTG 1 cut(s) 346
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 4 cut(s) 286, 410, 463, 499
ApeKI GCWGC 3 cut(s) 64, 569, 725
ApoI RAATTY 4 cut(s) 129, 396, 403, 881
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 1048
AspS9I GGNCC 4 cut(s) 4, 286, 524, 686
AsuHPI GGTGA 3 cut(s) 779, 842, 962
AsuNHI GCTAGC 1 cut(s) 1102
AvaII GGWCC 3 cut(s) 4, 524, 686
BamHI GGATCC 3 cut(s) 628, 823, 1057
Bbv12I GWGCWC 1 cut(s) 1000
BbvI GCAGC 3 cut(s) 76, 581, 737
BccI CCATC 6 cut(s) 37, 197, 491, 851, 899, 1291
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 5 cut(s) 296, 554, 663, 870, 939
BcoDI GTCTC 1 cut(s) 1033
BfaI CTAG 3 cut(s) 14, 1103, 1110
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 3 cut(s) 65, 570, 726
BlsI GCNGC 3 cut(s) 66, 571, 727
Bme1390I CCNGG 5 cut(s) 296, 554, 663, 870, 939
Bme18I GGWCC 3 cut(s) 4, 524, 686
BmgT120I GGNCC 4 cut(s) 4, 286, 524, 686
BmiI GGNNCC 4 cut(s) 630, 687, 825, 1059
BmrFI CCNGG 5 cut(s) 296, 554, 663, 870, 939
BmsI GCATC 5 cut(s) 97, 241, 799, 1033, 1115
BmtI GCTAGC 1 cut(s) 1106
BpmI CTGGAG 3 cut(s) 231, 594, 645
Bpu10I CCTNAGC 1 cut(s) 946
BsaJI CCNNGG 5 cut(s) 282, 376, 790, 868, 1128
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 6 cut(s) 284, 295, 472, 638, 875, 938
Bse1I ACTGG 4 cut(s) 83, 214, 880, 1090
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 5 cut(s) 296, 554, 663, 870, 939
BseDI CCNNGG 5 cut(s) 282, 376, 790, 868, 1128
BseGI GGATG 3 cut(s) 112, 304, 430
BseLI CCNNNNNNNGG 6 cut(s) 284, 295, 472, 638, 875, 938
BseMII CTCAG 1 cut(s) 960
BseNI ACTGG 4 cut(s) 83, 214, 880, 1090
BseXI GCAGC 3 cut(s) 76, 581, 737
BseYI CCCAGC 2 cut(s) 38, 1034
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 4 cut(s) 288, 412, 465, 501
BsiHKAI GWGCWC 1 cut(s) 1000
BsiSI CCGG 2 cut(s) 329, 827
BslFI GGGAC 1 cut(s) 814
BslI CCNNNNNNNGG 6 cut(s) 284, 295, 472, 638, 875, 938
BsmAI GTCTC 1 cut(s) 1033
BsmFI GGGAC 1 cut(s) 814
BsmI GAATGC 1 cut(s) 1113
BsnI GGCC 4 cut(s) 288, 412, 465, 501
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 5 cut(s) 449, 481, 628, 823, 1057
Bsp19I CCATGG 2 cut(s) 282, 790
BspACI CCGC 3 cut(s) 269, 1140, 1205
BspANI GGCC 4 cut(s) 288, 412, 465, 501
BspCNI CTCAG 1 cut(s) 959
BspEI TCCGGA 1 cut(s) 826
BspLI GGNNCC 4 cut(s) 630, 687, 825, 1059
BspOI GCTAGC 1 cut(s) 1106
BspPI GGATC 7 cut(s) 489, 623, 636, 818, 831, 1052, 1065
BspQI GCTCTTC 1 cut(s) 1272
BsrI ACTGG 4 cut(s) 83, 214, 880, 1090
BssECI CCNNGG 5 cut(s) 282, 376, 790, 868, 1128
BssMI GATC 5 cut(s) 449, 481, 628, 823, 1057
BssT1I CCWWGG 3 cut(s) 282, 790, 1128
Bst2UI CCWGG 5 cut(s) 296, 554, 663, 870, 939
Bst4CI ACNGT 2 cut(s) 541, 970
Bst6I CTCTTC 3 cut(s) 77, 145, 1272
BstAPI GCANNNNNTGC 2 cut(s) 116, 584
BstC8I GCNNGC 5 cut(s) 342, 414, 1050, 1104, 1302
BstDEI CTNAG 1 cut(s) 946
BstDSI CCRYGG 3 cut(s) 282, 376, 790
BstENI CCTNNNNNAGG 2 cut(s) 470, 936
BstF5I GGATG 3 cut(s) 112, 304, 430
BstHHI GCGC 1 cut(s) 1048
BstKTI GATC 5 cut(s) 452, 484, 631, 826, 1060
BstMAI GTCTC 1 cut(s) 1033
BstMBI GATC 5 cut(s) 449, 481, 628, 823, 1057
BstMWI GCNNNNNNNGC 5 cut(s) 116, 575, 584, 725, 734
BstNI CCWGG 5 cut(s) 296, 554, 663, 870, 939
BstNSI RCATGY 2 cut(s) 1052, 1102
BstSCI CCNGG 5 cut(s) 294, 552, 661, 868, 937
BstSFI CTRYAG 1 cut(s) 636
BstV1I GCAGC 3 cut(s) 76, 581, 737
BstX2I RGATCY 3 cut(s) 628, 823, 1057
BstXI CCANNNNNNTGG 1 cut(s) 797
BstYI RGATCY 3 cut(s) 628, 823, 1057
BsuRI GGCC 4 cut(s) 288, 412, 465, 501
BtgI CCRYGG 3 cut(s) 282, 376, 790
BtsCI GGATG 3 cut(s) 112, 304, 430
BtsIMutI CAGTG 2 cut(s) 560, 606
Cac8I GCNNGC 5 cut(s) 342, 414, 1050, 1104, 1302
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 1048
Cfr13I GGNCC 4 cut(s) 4, 286, 524, 686
CseI GACGC 1 cut(s) 928
Csp6I GTAC 3 cut(s) 207, 227, 873
CviAII CATG 9 cut(s) 283, 671, 749, 791, 961, 993, 1049, 1099, 1267
CviQI GTAC 3 cut(s) 207, 227, 873
DdeI CTNAG 1 cut(s) 946
DpnI GATC 5 cut(s) 451, 483, 630, 825, 1059
DpnII GATC 5 cut(s) 449, 481, 628, 823, 1057
Eam1104I CTCTTC 3 cut(s) 77, 145, 1272
EarI CTCTTC 3 cut(s) 77, 145, 1272
Eco130I CCWWGG 3 cut(s) 282, 790, 1128
Eco147I AGGCCT 1 cut(s) 465
Eco47I GGWCC 3 cut(s) 4, 524, 686
EcoNI CCTNNNNNAGG 2 cut(s) 470, 936
EcoRII CCWGG 5 cut(s) 294, 552, 661, 868, 937
EcoT14I CCWWGG 3 cut(s) 282, 790, 1128
EcoT22I ATGCAT 1 cut(s) 1054
ErhI CCWWGG 3 cut(s) 282, 790, 1128
FaeI CATG 9 cut(s) 286, 674, 752, 794, 964, 996, 1052, 1102, 1270
FalI AAGNNNNNCTT 6 cut(s) 486, 518, 749, 781, 1228, 1260
FaqI GGGAC 1 cut(s) 814
FatI CATG 9 cut(s) 282, 670, 748, 790, 960, 992, 1048, 1098, 1266
FauNDI CATATG 2 cut(s) 454, 532
Fnu4HI GCNGC 3 cut(s) 65, 570, 726
FokI GGATG 3 cut(s) 119, 291, 437
Fsp4HI GCNGC 3 cut(s) 65, 570, 726
FspAI RTGCGCAY 1 cut(s) 1047
FspBI CTAG 3 cut(s) 14, 1103, 1110
FspI TGCGCA 1 cut(s) 1047
GlaI GCGC 1 cut(s) 1047
GluI GCNGC 3 cut(s) 65, 570, 726
GsaI CCCAGC 2 cut(s) 42, 1038
GsuI CTGGAG 3 cut(s) 231, 594, 645
HaeIII GGCC 4 cut(s) 288, 412, 465, 501
HapII CCGG 2 cut(s) 329, 827
HgaI GACGC 1 cut(s) 928
HhaI GCGC 1 cut(s) 1048
Hin1II CATG 9 cut(s) 286, 674, 752, 794, 964, 996, 1052, 1102, 1270
Hin6I GCGC 1 cut(s) 1046
HinP1I GCGC 1 cut(s) 1046
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 7 cut(s) 85, 311, 557, 596, 611, 1184, 1208
HpaII CCGG 2 cut(s) 329, 827
HphI GGTGA 3 cut(s) 779, 842, 962
Hpy166II GTNNAC 4 cut(s) 442, 746, 787, 1080
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 6 cut(s) 89, 308, 347, 522, 827, 1181
Hpy8I GTNNAC 4 cut(s) 442, 746, 787, 1080
Hpy99I CGWCG 1 cut(s) 922
HpyAV CCTTC 6 cut(s) 33, 150, 509, 905, 1160, 1285
HpyCH4III ACNGT 2 cut(s) 541, 970
HpyCH4IV ACGT 2 cut(s) 742, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 575, 584, 725, 734
HpyF3I CTNAG 1 cut(s) 946
HpySE526I ACGT 2 cut(s) 742, 1250
Hsp92II CATG 9 cut(s) 286, 674, 752, 794, 964, 996, 1052, 1102, 1270
HspAI GCGC 1 cut(s) 1046
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 5 cut(s) 449, 481, 628, 823, 1057
LguI GCTCTTC 1 cut(s) 1272
LmnI GCTCC 2 cut(s) 280, 575
Lsp1109I GCAGC 3 cut(s) 76, 581, 737
LweI GCATC 5 cut(s) 97, 241, 799, 1033, 1115
MaeI CTAG 3 cut(s) 14, 1103, 1110
MaeII ACGT 2 cut(s) 742, 1250
MaeIII GTNAC 4 cut(s) 16, 457, 558, 863
MalI GATC 5 cut(s) 451, 483, 630, 825, 1059
MboI GATC 5 cut(s) 449, 481, 628, 823, 1057
MboII GAAGA 6 cut(s) 94, 162, 829, 920, 1150, 1289
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 3 cut(s) 628, 823, 1057
MhlI GDGCHC 1 cut(s) 1000
MlyI GAGTC 4 cut(s) 94, 566, 620, 1178
MnlI CCTC 7 cut(s) 17, 146, 669, 814, 935, 942, 1163
Mph1103I ATGCAT 1 cut(s) 1054
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 5 cut(s) 234, 590, 1008, 1296, 1317
MslI CAYNNNNRTG 2 cut(s) 795, 855
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 2 cut(s) 329, 827
MspR9I CCNGG 5 cut(s) 296, 554, 663, 870, 939
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 1113
MvaI CCWGG 5 cut(s) 296, 554, 663, 870, 939
MwoI GCNNNNNNNGC 5 cut(s) 116, 575, 584, 725, 734
NcoI CCATGG 2 cut(s) 282, 790
NdeI CATATG 2 cut(s) 454, 532
NdeII GATC 5 cut(s) 449, 481, 628, 823, 1057
NheI GCTAGC 1 cut(s) 1102
NlaIII CATG 9 cut(s) 286, 674, 752, 794, 964, 996, 1052, 1102, 1270
NlaIV GGNNCC 4 cut(s) 630, 687, 825, 1059
NmuCI GTSAC 1 cut(s) 558
NsbI TGCGCA 1 cut(s) 1047
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 2 cut(s) 1052, 1102
PaeI GCATGC 1 cut(s) 1052
PceI AGGCCT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 1272
PctI GAATGC 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 3 cut(s) 311, 596, 1208
PfoI TCCNGGA 2 cut(s) 552, 661
PkrI GCNGC 3 cut(s) 66, 571, 727
PleI GAGTC 4 cut(s) 93, 565, 619, 1178
PpsI GAGTC 4 cut(s) 93, 565, 619, 1178
PsiI TTATAA 1 cut(s) 770
Psp6I CCWGG 5 cut(s) 294, 552, 661, 868, 937
PspFI CCCAGC 2 cut(s) 38, 1034
PspGI CCWGG 5 cut(s) 294, 552, 661, 868, 937
PspN4I GGNNCC 4 cut(s) 630, 687, 825, 1059
PspPI GGNCC 4 cut(s) 4, 286, 524, 686
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 3 cut(s) 628, 823, 1057
PvuII CAGCTG 1 cut(s) 572
RsaI GTAC 3 cut(s) 208, 228, 874
RsaNI GTAC 3 cut(s) 207, 227, 873
RseI CAYNNNNRTG 2 cut(s) 795, 855
SapI GCTCTTC 1 cut(s) 1272
SaqAI TTAA 5 cut(s) 234, 590, 1008, 1296, 1317
SatI GCNGC 3 cut(s) 65, 570, 726
Sau3AI GATC 5 cut(s) 449, 481, 628, 823, 1057
Sau96I GGNCC 4 cut(s) 4, 286, 524, 686
SchI GAGTC 4 cut(s) 94, 566, 620, 1178
ScrFI CCNGG 5 cut(s) 296, 554, 663, 870, 939
SduI GDGCHC 1 cut(s) 1000
SfaNI GCATC 5 cut(s) 97, 241, 799, 1033, 1115
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 3 cut(s) 4, 524, 686
SmiMI CAYNNNNRTG 2 cut(s) 795, 855
SphI GCATGC 1 cut(s) 1052
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 3 cut(s) 269, 1140, 1205
SspI AATATT 2 cut(s) 114, 715
SspMI CTAG 3 cut(s) 14, 1103, 1110
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 5 cut(s) 294, 552, 661, 868, 937
StyI CCWWGG 3 cut(s) 282, 790, 1128
TaaI ACNGT 2 cut(s) 541, 970
TaiI ACGT 2 cut(s) 745, 1253
TaqI TCGA 2 cut(s) 1147, 1182
TfiI GAWTC 3 cut(s) 311, 596, 1208
Tru1I TTAA 5 cut(s) 234, 590, 1008, 1296, 1317
Tru9I TTAA 5 cut(s) 234, 590, 1008, 1296, 1317
TscAI CASTG 2 cut(s) 567, 606
TseFI GTSAC 1 cut(s) 558
TseI GCWGC 3 cut(s) 64, 569, 725
Tsp45I GTSAC 1 cut(s) 558
TspDTI ATGAA 3 cut(s) 632, 993, 1290
TspGWI ACGGA 2 cut(s) 365, 1189
TspRI CASTG 2 cut(s) 567, 606
VpaK11BI GGWCC 3 cut(s) 4, 524, 686
XagI CCTNNNNNAGG 2 cut(s) 470, 936
XapI RAATTY 4 cut(s) 129, 396, 403, 881
XceI RCATGY 2 cut(s) 1052, 1102
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 3 cut(s) 14, 1103, 1110
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.