histone deacetylase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33470 |
| fragaria_vesca | FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 |
| malus_domestica | MD01G1005700.v1.1 |
| prunus_persica | Prupe.4G272300_v2.0.a1 Prupe.4G272300_v2.0.a1 Prupe.4G272300_v2.0.a1 |
| pyrus_communis | pycom01g01290 |
| rosa_chinensis | RchiOBHm_Chr2g0121851 |
| rosa_laevigata | RLG00000018632 |
| rosa_multiflora | Rmu_sc0003880.1_g000035 |
| rosa_roxburghii | Rroxscaffold_2G00122220 |
| rosa_rugosa | Rorug02G0234600 |
| rosa_samantha | Rh2AG291500 Rh2BG302000 Rh2DG316000 |
| rosa_wichuraiana | Rw2G023380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 707 |
| Acc16I | TGCGCA | 1 cut(s) | 984 |
| AccI | GTMKAC | 1 cut(s) | 1184 |
| AccII | CGCG | 1 cut(s) | 837 |
| AciI | CCGC | 1 cut(s) | 837 |
| AclWI | GGATC | 7 cut(s) | 426, 560, 573, 755, 768, 989, 1002 |
| AcsI | RAATTY | 3 cut(s) | 66, 79, 818 |
| AcyI | GRCGYC | 1 cut(s) | 1181 |
| AfaI | GTAC | 2 cut(s) | 145, 811 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 221, 409, 575, 812, 875 |
| AgsI | TTSAA | 7 cut(s) | 138, 332, 338, 407, 694, 783, 1055 |
| AjnI | CCWGG | 5 cut(s) | 231, 489, 598, 805, 874 |
| AluBI | AGCT | 5 cut(s) | 122, 212, 298, 509, 665 |
| AluI | AGCT | 5 cut(s) | 122, 212, 298, 509, 665 |
| Alw21I | GWGCWC | 3 cut(s) | 300, 685, 937 |
| Alw26I | GTCTC | 2 cut(s) | 476, 970 |
| Alw44I | GTGCAC | 1 cut(s) | 681 |
| AlwI | GGATC | 7 cut(s) | 426, 560, 573, 755, 768, 989, 1002 |
| AoxI | GGCC | 3 cut(s) | 347, 400, 436 |
| ApaLI | GTGCAC | 1 cut(s) | 681 |
| ApeKI | GCWGC | 2 cut(s) | 506, 662 |
| ApoI | RAATTY | 3 cut(s) | 66, 79, 818 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 33 |
| AspLEI | GCGC | 1 cut(s) | 985 |
| AspS9I | GGNCC | 2 cut(s) | 461, 623 |
| AsuHPI | GGTGA | 3 cut(s) | 716, 779, 899 |
| AsuNHI | GCTAGC | 1 cut(s) | 1039 |
| AvaII | GGWCC | 2 cut(s) | 461, 623 |
| BaeGI | GKGCMC | 1 cut(s) | 685 |
| BamHI | GGATCC | 3 cut(s) | 565, 760, 994 |
| BanII | GRGCYC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 3 cut(s) | 300, 685, 937 |
| BbvI | GCAGC | 2 cut(s) | 518, 674 |
| BccI | CCATC | 4 cut(s) | 56, 622, 836, 1228 |
| BceAI | ACGGC | 1 cut(s) | 451 |
| BciT130I | CCWGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| BciVI | GTATCC | 1 cut(s) | 1103 |
| BcoDI | GTCTC | 2 cut(s) | 476, 970 |
| BfaI | CTAG | 3 cut(s) | 126, 1040, 1047 |
| BfmI | CTRYAG | 3 cut(s) | 207, 270, 573 |
| BfuI | GTATCC | 1 cut(s) | 1103 |
| BisI | GCNGC | 2 cut(s) | 507, 663 |
| BlpI | GCTNAGC | 1 cut(s) | 675 |
| BlsI | GCNGC | 2 cut(s) | 508, 664 |
| Bme1390I | CCNGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| Bme18I | GGWCC | 2 cut(s) | 461, 623 |
| BmgT120I | GGNCC | 2 cut(s) | 461, 623 |
| BmiI | GGNNCC | 4 cut(s) | 567, 624, 762, 996 |
| BmrFI | CCNGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| BmsI | GCATC | 7 cut(s) | 34, 178, 362, 736, 970, 1052, 1076 |
| BmtI | GCTAGC | 1 cut(s) | 1043 |
| BpmI | CTGGAG | 4 cut(s) | 37, 168, 531, 582 |
| Bpu10I | CCTNAGC | 1 cut(s) | 883 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 675 |
| BsaAI | YACGTR | 1 cut(s) | 194 |
| BsaHI | GRCGYC | 1 cut(s) | 1181 |
| BsaJI | CCNNGG | 5 cut(s) | 219, 313, 727, 805, 1065 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 221, 409, 575, 812, 875 |
| Bse1I | ACTGG | 4 cut(s) | 20, 151, 817, 1027 |
| BseBI | CCWGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| BseDI | CCNNGG | 5 cut(s) | 219, 313, 727, 805, 1065 |
| BseGI | GGATG | 4 cut(s) | 49, 104, 241, 367 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 221, 409, 575, 812, 875 |
| BseMII | CTCAG | 3 cut(s) | 689, 897, 950 |
| BseNI | ACTGG | 4 cut(s) | 20, 151, 817, 1027 |
| BseRI | GAGGAG | 1 cut(s) | 34 |
| BseSI | GKGCMC | 1 cut(s) | 685 |
| BseXI | GCAGC | 2 cut(s) | 518, 674 |
| BseYI | CCCAGC | 1 cut(s) | 971 |
| BsgI | GTGCAG | 1 cut(s) | 296 |
| Bsh1236I | CGCG | 1 cut(s) | 837 |
| BshFI | GGCC | 3 cut(s) | 349, 402, 438 |
| BsiHKAI | GWGCWC | 3 cut(s) | 300, 685, 937 |
| BslFI | GGGAC | 1 cut(s) | 751 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 221, 409, 575, 812, 875 |
| BsmAI | GTCTC | 2 cut(s) | 476, 970 |
| BsmBI | CGTCTC | 1 cut(s) | 970 |
| BsmFI | GGGAC | 1 cut(s) | 751 |
| BsmI | GAATGC | 1 cut(s) | 1050 |
| BsnI | GGCC | 3 cut(s) | 349, 402, 438 |
| Bsp1286I | GDGCHC | 3 cut(s) | 300, 685, 937 |
| Bsp143I | GATC | 4 cut(s) | 418, 565, 760, 994 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 675 |
| Bsp19I | CCATGG | 1 cut(s) | 219 |
| BspACI | CCGC | 1 cut(s) | 837 |
| BspANI | GGCC | 3 cut(s) | 349, 402, 438 |
| BspCNI | CTCAG | 3 cut(s) | 688, 896, 949 |
| BspFNI | CGCG | 1 cut(s) | 837 |
| BspLI | GGNNCC | 4 cut(s) | 567, 624, 762, 996 |
| BspOI | GCTAGC | 1 cut(s) | 1043 |
| BspPI | GGATC | 7 cut(s) | 426, 560, 573, 755, 768, 989, 1002 |
| BspQI | GCTCTTC | 1 cut(s) | 1209 |
| BsrI | ACTGG | 4 cut(s) | 20, 151, 817, 1027 |
| BssECI | CCNNGG | 5 cut(s) | 219, 313, 727, 805, 1065 |
| BssMI | GATC | 4 cut(s) | 418, 565, 760, 994 |
| BssNI | GRCGYC | 1 cut(s) | 1181 |
| BssT1I | CCWWGG | 2 cut(s) | 219, 1065 |
| Bst2UI | CCWGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| Bst4CI | ACNGT | 2 cut(s) | 478, 907 |
| Bst6I | CTCTTC | 2 cut(s) | 82, 1209 |
| BstACI | GRCGYC | 1 cut(s) | 1181 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 53, 521 |
| BstBAI | YACGTR | 1 cut(s) | 194 |
| BstC8I | GCNNGC | 6 cut(s) | 279, 351, 681, 987, 1041, 1239 |
| BstDEI | CTNAG | 4 cut(s) | 675, 883, 936, 1099 |
| BstDSI | CCRYGG | 3 cut(s) | 219, 313, 727 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 407, 873 |
| BstF5I | GGATG | 4 cut(s) | 49, 104, 241, 367 |
| BstFNI | CGCG | 1 cut(s) | 837 |
| BstHHI | GCGC | 1 cut(s) | 985 |
| BstKTI | GATC | 4 cut(s) | 421, 568, 763, 997 |
| BstMAI | GTCTC | 2 cut(s) | 476, 970 |
| BstMBI | GATC | 4 cut(s) | 418, 565, 760, 994 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 53, 512, 521, 662, 671, 680, 843 |
| BstNI | CCWGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| BstNSI | RCATGY | 2 cut(s) | 989, 1039 |
| BstSCI | CCNGG | 5 cut(s) | 231, 489, 598, 805, 874 |
| BstSFI | CTRYAG | 3 cut(s) | 207, 270, 573 |
| BstSLI | GKGCMC | 1 cut(s) | 685 |
| BstUI | CGCG | 1 cut(s) | 837 |
| BstV1I | GCAGC | 2 cut(s) | 518, 674 |
| BstX2I | RGATCY | 3 cut(s) | 565, 760, 994 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 734 |
| BstYI | RGATCY | 3 cut(s) | 565, 760, 994 |
| BsuI | GTATCC | 1 cut(s) | 1103 |
| BsuRI | GGCC | 3 cut(s) | 349, 402, 438 |
| BtgI | CCRYGG | 3 cut(s) | 219, 313, 727 |
| BtsCI | GGATG | 4 cut(s) | 49, 104, 241, 367 |
| BtsIMutI | CAGTG | 3 cut(s) | 363, 497, 543 |
| Cac8I | GCNNGC | 6 cut(s) | 279, 351, 681, 987, 1041, 1239 |
| CfoI | GCGC | 1 cut(s) | 985 |
| Cfr13I | GGNCC | 2 cut(s) | 461, 623 |
| CseI | GACGC | 1 cut(s) | 1170 |
| CsiI | ACCWGGT | 1 cut(s) | 874 |
| Csp6I | GTAC | 2 cut(s) | 144, 810 |
| CviAII | CATG | 8 cut(s) | 220, 608, 686, 898, 930, 986, 1036, 1204 |
| CviQI | GTAC | 2 cut(s) | 144, 810 |
| DdeI | CTNAG | 4 cut(s) | 675, 883, 936, 1099 |
| DpnI | GATC | 4 cut(s) | 420, 567, 762, 996 |
| DpnII | GATC | 4 cut(s) | 418, 565, 760, 994 |
| Eam1104I | CTCTTC | 2 cut(s) | 82, 1209 |
| EarI | CTCTTC | 2 cut(s) | 82, 1209 |
| Ecl136II | GAGCTC | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 2 cut(s) | 219, 1065 |
| Eco147I | AGGCCT | 1 cut(s) | 402 |
| Eco24I | GRGCYC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 2 cut(s) | 461, 623 |
| Eco53kI | GAGCTC | 1 cut(s) | 298 |
| EcoICRI | GAGCTC | 1 cut(s) | 298 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 407, 873 |
| EcoRII | CCWGG | 5 cut(s) | 231, 489, 598, 805, 874 |
| EcoT14I | CCWWGG | 2 cut(s) | 219, 1065 |
| EcoT22I | ATGCAT | 1 cut(s) | 991 |
| EcoT38I | GRGCYC | 1 cut(s) | 300 |
| ErhI | CCWWGG | 2 cut(s) | 219, 1065 |
| Esp3I | CGTCTC | 1 cut(s) | 970 |
| FaeI | CATG | 8 cut(s) | 223, 611, 689, 901, 933, 989, 1039, 1207 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 423, 455, 686, 718 |
| FaqI | GGGAC | 1 cut(s) | 751 |
| FatI | CATG | 8 cut(s) | 219, 607, 685, 897, 929, 985, 1035, 1203 |
| FauNDI | CATATG | 2 cut(s) | 391, 469 |
| FblI | GTMKAC | 1 cut(s) | 1184 |
| Fnu4HI | GCNGC | 2 cut(s) | 507, 663 |
| FokI | GGATG | 4 cut(s) | 56, 111, 228, 374 |
| FriOI | GRGCYC | 1 cut(s) | 300 |
| Fsp4HI | GCNGC | 2 cut(s) | 507, 663 |
| FspAI | RTGCGCAY | 1 cut(s) | 984 |
| FspBI | CTAG | 3 cut(s) | 126, 1040, 1047 |
| FspI | TGCGCA | 1 cut(s) | 984 |
| GlaI | GCGC | 1 cut(s) | 984 |
| GluI | GCNGC | 2 cut(s) | 507, 663 |
| GsaI | CCCAGC | 1 cut(s) | 975 |
| GsuI | CTGGAG | 4 cut(s) | 37, 168, 531, 582 |
| HaeIII | GGCC | 3 cut(s) | 349, 402, 438 |
| HgaI | GACGC | 1 cut(s) | 1170 |
| HhaI | GCGC | 1 cut(s) | 985 |
| Hin1I | GRCGYC | 1 cut(s) | 1181 |
| Hin1II | CATG | 8 cut(s) | 223, 611, 689, 901, 933, 989, 1039, 1207 |
| Hin6I | GCGC | 1 cut(s) | 983 |
| HinP1I | GCGC | 1 cut(s) | 983 |
| HindIII | AAGCTT | 1 cut(s) | 120 |
| HinfI | GANTC | 7 cut(s) | 22, 248, 494, 533, 548, 1121, 1145 |
| HphI | GGTGA | 3 cut(s) | 716, 779, 899 |
| Hpy166II | GTNNAC | 3 cut(s) | 683, 724, 1185 |
| Hpy188I | TCNGA | 3 cut(s) | 627, 939, 1248 |
| Hpy188III | TCNNGA | 6 cut(s) | 26, 245, 284, 459, 764, 1118 |
| Hpy8I | GTNNAC | 3 cut(s) | 683, 724, 1185 |
| HpyAV | CCTTC | 6 cut(s) | 87, 316, 446, 842, 1097, 1222 |
| HpyCH4III | ACNGT | 2 cut(s) | 478, 907 |
| HpyCH4IV | ACGT | 2 cut(s) | 193, 1187 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 53, 512, 521, 662, 671, 680, 843 |
| HpyF3I | CTNAG | 4 cut(s) | 675, 883, 936, 1099 |
| HpySE526I | ACGT | 2 cut(s) | 193, 1187 |
| Hsp92I | GRCGYC | 1 cut(s) | 1181 |
| Hsp92II | CATG | 8 cut(s) | 223, 611, 689, 901, 933, 989, 1039, 1207 |
| HspAI | GCGC | 1 cut(s) | 983 |
| Kzo9I | GATC | 4 cut(s) | 418, 565, 760, 994 |
| LguI | GCTCTTC | 1 cut(s) | 1209 |
| LmnI | GCTCC | 3 cut(s) | 217, 295, 512 |
| Lsp1109I | GCAGC | 2 cut(s) | 518, 674 |
| LweI | GCATC | 7 cut(s) | 34, 178, 362, 736, 970, 1052, 1076 |
| MabI | ACCWGGT | 1 cut(s) | 874 |
| MaeI | CTAG | 3 cut(s) | 126, 1040, 1047 |
| MaeII | ACGT | 2 cut(s) | 193, 1187 |
| MaeIII | GTNAC | 2 cut(s) | 495, 800 |
| MalI | GATC | 4 cut(s) | 420, 567, 762, 996 |
| MboI | GATC | 4 cut(s) | 418, 565, 760, 994 |
| MboII | GAAGA | 4 cut(s) | 99, 766, 857, 1226 |
| MflI | RGATCY | 3 cut(s) | 565, 760, 994 |
| MhlI | GDGCHC | 3 cut(s) | 300, 685, 937 |
| MlyI | GAGTC | 4 cut(s) | 31, 503, 557, 1115 |
| Mph1103I | ATGCAT | 1 cut(s) | 991 |
| MroXI | GAANNNNTTC | 1 cut(s) | 33 |
| MseI | TTAA | 7 cut(s) | 171, 527, 587, 945, 1164, 1233, 1254 |
| MslI | CAYNNNNRTG | 2 cut(s) | 42, 732 |
| MspA1I | CMGCKG | 1 cut(s) | 509 |
| MspR9I | CCNGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| Mva1269I | GAATGC | 1 cut(s) | 1050 |
| MvaI | CCWGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| MvnI | CGCG | 1 cut(s) | 837 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 53, 512, 521, 662, 671, 680, 843 |
| NcoI | CCATGG | 1 cut(s) | 219 |
| NdeI | CATATG | 2 cut(s) | 391, 469 |
| NdeII | GATC | 4 cut(s) | 418, 565, 760, 994 |
| NheI | GCTAGC | 1 cut(s) | 1039 |
| NlaIII | CATG | 8 cut(s) | 223, 611, 689, 901, 933, 989, 1039, 1207 |
| NlaIV | GGNNCC | 4 cut(s) | 567, 624, 762, 996 |
| NmuCI | GTSAC | 1 cut(s) | 495 |
| NsbI | TGCGCA | 1 cut(s) | 984 |
| NsiI | ATGCAT | 1 cut(s) | 991 |
| NspI | RCATGY | 2 cut(s) | 989, 1039 |
| PaeI | GCATGC | 1 cut(s) | 989 |
| PceI | AGGCCT | 1 cut(s) | 402 |
| PciSI | GCTCTTC | 1 cut(s) | 1209 |
| PctI | GAATGC | 1 cut(s) | 1050 |
| PdmI | GAANNNNTTC | 1 cut(s) | 33 |
| PfeI | GAWTC | 3 cut(s) | 248, 533, 1145 |
| PfoI | TCCNGGA | 2 cut(s) | 489, 598 |
| PkrI | GCNGC | 2 cut(s) | 508, 664 |
| PleI | GAGTC | 4 cut(s) | 30, 502, 556, 1115 |
| PpsI | GAGTC | 4 cut(s) | 30, 502, 556, 1115 |
| Ppu21I | YACGTR | 1 cut(s) | 194 |
| PsiI | TTATAA | 1 cut(s) | 707 |
| Psp124BI | GAGCTC | 1 cut(s) | 300 |
| Psp6I | CCWGG | 5 cut(s) | 231, 489, 598, 805, 874 |
| PspFI | CCCAGC | 1 cut(s) | 971 |
| PspGI | CCWGG | 5 cut(s) | 231, 489, 598, 805, 874 |
| PspN4I | GGNNCC | 4 cut(s) | 567, 624, 762, 996 |
| PspPI | GGNCC | 2 cut(s) | 461, 623 |
| PsuI | RGATCY | 3 cut(s) | 565, 760, 994 |
| PvuII | CAGCTG | 1 cut(s) | 509 |
| RsaI | GTAC | 2 cut(s) | 145, 811 |
| RsaNI | GTAC | 2 cut(s) | 144, 810 |
| RseI | CAYNNNNRTG | 2 cut(s) | 42, 732 |
| SacI | GAGCTC | 1 cut(s) | 300 |
| SapI | GCTCTTC | 1 cut(s) | 1209 |
| SaqAI | TTAA | 7 cut(s) | 171, 527, 587, 945, 1164, 1233, 1254 |
| SatI | GCNGC | 2 cut(s) | 507, 663 |
| Sau3AI | GATC | 4 cut(s) | 418, 565, 760, 994 |
| Sau96I | GGNCC | 2 cut(s) | 461, 623 |
| SchI | GAGTC | 4 cut(s) | 31, 503, 557, 1115 |
| ScrFI | CCNGG | 5 cut(s) | 233, 491, 600, 807, 876 |
| SduI | GDGCHC | 3 cut(s) | 300, 685, 937 |
| SexAI | ACCWGGT | 1 cut(s) | 874 |
| SfaNI | GCATC | 7 cut(s) | 34, 178, 362, 736, 970, 1052, 1076 |
| SfcI | CTRYAG | 3 cut(s) | 207, 270, 573 |
| SinI | GGWCC | 2 cut(s) | 461, 623 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 42, 732 |
| SphI | GCATGC | 1 cut(s) | 989 |
| SseBI | AGGCCT | 1 cut(s) | 402 |
| SsiI | CCGC | 1 cut(s) | 837 |
| SspI | AATATT | 2 cut(s) | 51, 652 |
| SspMI | CTAG | 3 cut(s) | 126, 1040, 1047 |
| SstI | GAGCTC | 1 cut(s) | 300 |
| StuI | AGGCCT | 1 cut(s) | 402 |
| StyD4I | CCNGG | 5 cut(s) | 231, 489, 598, 805, 874 |
| StyI | CCWWGG | 2 cut(s) | 219, 1065 |
| TaaI | ACNGT | 2 cut(s) | 478, 907 |
| TaiI | ACGT | 2 cut(s) | 196, 1190 |
| TaqI | TCGA | 3 cut(s) | 320, 1084, 1119 |
| TfiI | GAWTC | 3 cut(s) | 248, 533, 1145 |
| Tru1I | TTAA | 7 cut(s) | 171, 527, 587, 945, 1164, 1233, 1254 |
| Tru9I | TTAA | 7 cut(s) | 171, 527, 587, 945, 1164, 1233, 1254 |
| TscAI | CASTG | 3 cut(s) | 363, 504, 543 |
| TseFI | GTSAC | 1 cut(s) | 495 |
| TseI | GCWGC | 2 cut(s) | 506, 662 |
| Tsp45I | GTSAC | 1 cut(s) | 495 |
| TspDTI | ATGAA | 6 cut(s) | 368, 930, 1119, 1137, 1227, 1241 |
| TspGWI | ACGGA | 2 cut(s) | 302, 1126 |
| TspRI | CASTG | 3 cut(s) | 363, 504, 543 |
| VneI | GTGCAC | 1 cut(s) | 681 |
| VpaK11BI | GGWCC | 2 cut(s) | 461, 623 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 407, 873 |
| XapI | RAATTY | 3 cut(s) | 66, 79, 818 |
| XceI | RCATGY | 2 cut(s) | 989, 1039 |
| XmiI | GTMKAC | 1 cut(s) | 1184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 33 |
| XspI | CTAG | 3 cut(s) | 126, 1040, 1047 |
| Zsp2I | ATGCAT | 1 cut(s) | 991 |