Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006797

Physical Location & Seq

Genomic Coordinates Reverse (-)

22392376 .. 22400305

Gene Structure 7930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G272300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGCTCCTTGCAGTCTCTTTCTCGTCATCTCTGGCTGGGAATGCCTTGTTTTTGGCGAGGCAGCATTTGTGCAAGTGGAAGAACCATAGTAGATTTGACTTAGAAGCCAAATTTGTGAGAAATAAAATTTTGAATAAGAGTTTGAGAAGAGGAAGGAGGTGTTTATCTGAAAAAACAGAAGCTTCTATTTCTTGTTCAACTGGTACAGGGGAGGATCCCCTTATACCTGTTAATAAGAAATTAAGTGATGCACGCGTCATTTATGCTGTAGCTCCTGCCATGGGTCATAACCAGGAGTCTCATCCAGAATCCCATTTTAGAGTTCCGTCAATAGTGAATGCTCTTGAAAAATGGGAGCTCTCGCCAAAGTTCCGTGGCTTGGAGGTTATTGAACTTGAAAATTTCAACGCAGCATCATCGAATGACATTGCAAGTGTTCATACAAGAGCCTATGTATCAGGCCTTGAGAAGGCTATGGATCAAGCCTCAAAACAGGGAATTATTTTGATTGAAGGCTCTGGGCCAACATACGCAACTGTTGATACGTTCCAGGAGTCACTAGTTGCAGCTGGAGCAGGAATTGCCTTAATTGATGCAGTGGTTGCAGAATCAAAGATCAGCAAGAGTCCACCTGTAGGTTTTGCTTTAATAAGACCTCCTGGACATCATGCTATTCCAAAGGGTCCAATGGGGTTTTGTGTTTTCGGAAATGTTGCAGTTGCAGCTCGTTATGCTCAGCGTTCACATGGCTTAAAGCGTGTGTTTATCATTGATTTTGATGTTCACCATGGGAATGGGACAAATGATGCTTTCTATGATGATCCTGATATATTTTTCCTGTCAACTCACCAAGATGGAAGCTACCCTGGTACTGGTAAATTTGAGGAGGTAGGCCATGGAGATGGGGAAGGAACAACACTAAATCTTCCTCTACCTGGAGGCTCAGGTGATACTGCCATGAGAACTGTGTTTGATGAAATAATTGTACCATGTGCTCAGAGGTTTAAGCCAGATATTATCCTTGTCTCTGCTGGGTATGATGCTCATGTATTGGATCCACTAGCAAGTCTGCAATTCACGACGGGAACATACTACATGCTTGCATCCTATATTCAACAACTTGCGAATGATCTATGTGAGGGTCGATGTGTATTTTTCTTGGAAGGAGGATACAACCTCAAGTCCCTTTCCTATTCCGTGGCAGATTCATTCCGTGCCTTTCTGGGAGAGCCAAGTTTGGCTTCCGAGTTTGACAACCCTGCCATCTTGCATGAAGAGCCATCAACCAGGGTTAGGCAGGCAATTGAGAGGGTAAAACATATACATTCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

446

Amino Acids

48.47

Weight (kDa)

6.1

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33470
fragaria_vesca	FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510 FvH4_1g24510
malus_domestica	MD01G1005700.v1.1
prunus_persica	Prupe.4G272300_v2.0.a1 Prupe.4G272300_v2.0.a1 Prupe.4G272300_v2.0.a1
pyrus_communis	pycom01g01290
rosa_chinensis	RchiOBHm_Chr2g0121851
rosa_laevigata	RLG00000018632
rosa_multiflora	Rmu_sc0003880.1_g000035
rosa_roxburghii	Rroxscaffold_2G00122220
rosa_rugosa	Rorug02G0234600
rosa_samantha	Rh2AG291500 Rh2BG302000 Rh2DG316000
rosa_wichuraiana	Rw2G023380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AclWI	GGATC	6 cut(s)	212, 225, 489, 818, 1052, 1065
AcsI	RAATTY	4 cut(s)	113, 129, 403, 881
AfaI	GTAC	3 cut(s)	208, 874, 990
AfiI	CCNNNNNNNGG	7 cut(s)	284, 382, 472, 638, 875, 938, 1296
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	8 cut(s)	136, 201, 350, 395, 401, 409, 515, 1118
AhlI	ACTAGT	1 cut(s)	562
AjnI	CCWGG	6 cut(s)	294, 552, 661, 868, 937, 1289
AjuI	GAANNNNNNNTTGG	2 cut(s)	1228, 1260
AluBI	AGCT	7 cut(s)	7, 185, 275, 361, 572, 728, 864
AluI	AGCT	7 cut(s)	7, 185, 275, 361, 572, 728, 864
Alw21I	GWGCWC	3 cut(s)	9, 363, 1000
Alw26I	GTCTC	3 cut(s)	22, 306, 1033
AlwI	GGATC	6 cut(s)	212, 225, 489, 818, 1052, 1065
AoxI	GGCC	3 cut(s)	463, 524, 895
ApeKI	GCWGC	4 cut(s)	64, 413, 569, 725
ApoI	RAATTY	4 cut(s)	113, 129, 403, 881
AspS9I	GGNCC	2 cut(s)	524, 686
AsuHPI	GGTGA	3 cut(s)	779, 842, 962
AvaII	GGWCC	1 cut(s)	686
BamHI	GGATCC	2 cut(s)	217, 1057
BanII	GRGCYC	2 cut(s)	9, 363
Bbv12I	GWGCWC	3 cut(s)	9, 363, 1000
BbvI	GCAGC	4 cut(s)	76, 425, 581, 737
BccI	CCATC	4 cut(s)	851, 899, 1274, 1291
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	6 cut(s)	296, 554, 663, 870, 939, 1291
BciVI	GTATCC	1 cut(s)	1166
BcoDI	GTCTC	3 cut(s)	22, 306, 1033
BcuI	ACTAGT	1 cut(s)	562
BfaI	CTAG	2 cut(s)	563, 1064
BfmI	CTRYAG	2 cut(s)	270, 636
BfuI	GTATCC	1 cut(s)	1166
BisI	GCNGC	4 cut(s)	65, 414, 570, 726
BlpI	GCTNAGC	1 cut(s)	738
BlsI	GCNGC	4 cut(s)	66, 415, 571, 727
Bme1390I	CCNGG	6 cut(s)	296, 554, 663, 870, 939, 1291
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	2 cut(s)	524, 686
BmiI	GGNNCC	3 cut(s)	219, 687, 1059
BmrFI	CCNGG	6 cut(s)	296, 554, 663, 870, 939, 1291
BmsI	GCATC	6 cut(s)	241, 425, 586, 799, 1033, 1115
BpmI	CTGGAG	2 cut(s)	594, 960
Bpu10I	CCTNAGC	1 cut(s)	946
Bpu1102I	GCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	2 cut(s)	488, 1166
BsaJI	CCNNGG	7 cut(s)	282, 376, 790, 868, 898, 1200, 1290
Bsc4I	CCNNNNNNNGG	7 cut(s)	284, 382, 472, 638, 875, 938, 1296
Bse1I	ACTGG	2 cut(s)	208, 880
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	6 cut(s)	296, 554, 663, 870, 939, 1291
BseDI	CCNNGG	7 cut(s)	282, 376, 790, 868, 898, 1200, 1290
BseGI	GGATG	2 cut(s)	304, 1106
BseLI	CCNNNNNNNGG	7 cut(s)	284, 382, 472, 638, 875, 938, 1296
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	752, 960, 1013
BseNI	ACTGG	2 cut(s)	208, 880
BseRI	GAGGAG	1 cut(s)	902
BseXI	GCAGC	4 cut(s)	76, 425, 581, 737
BseYI	CCCAGC	2 cut(s)	38, 1034
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	3 cut(s)	465, 526, 897
BsiHKAI	GWGCWC	3 cut(s)	9, 363, 1000
BslFI	GGGAC	2 cut(s)	814, 1171
BslI	CCNNNNNNNGG	7 cut(s)	284, 382, 472, 638, 875, 938, 1296
BsmAI	GTCTC	3 cut(s)	22, 306, 1033
BsmFI	GGGAC	2 cut(s)	814, 1171
BsmI	GAATGC	2 cut(s)	49, 346
BsnI	GGCC	3 cut(s)	465, 526, 897
Bsp1286I	GDGCHC	3 cut(s)	9, 363, 1000
Bsp143I	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
Bsp1720I	GCTNAGC	1 cut(s)	738
Bsp19I	CCATGG	3 cut(s)	282, 790, 898
BspANI	GGCC	3 cut(s)	465, 526, 897
BspCNI	CTCAG	3 cut(s)	751, 959, 1012
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	219, 687, 1059
BspPI	GGATC	6 cut(s)	212, 225, 489, 818, 1052, 1065
BspQI	GCTCTTC	1 cut(s)	1272
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	208, 880
BssECI	CCNNGG	7 cut(s)	282, 376, 790, 868, 898, 1200, 1290
BssMI	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
BssT1I	CCWWGG	3 cut(s)	282, 790, 898
Bst2UI	CCWGG	6 cut(s)	296, 554, 663, 870, 939, 1291
Bst4CI	ACNGT	2 cut(s)	541, 970
Bst6I	CTCTTC	2 cut(s)	145, 1272
BstAPI	GCANNNNNTGC	2 cut(s)	584, 605
BstC8I	GCNNGC	3 cut(s)	256, 1104, 1302
BstDEI	CTNAG	4 cut(s)	103, 738, 946, 999
BstDSI	CCRYGG	5 cut(s)	282, 376, 790, 898, 1200
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstF5I	GGATG	2 cut(s)	304, 1106
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	6 cut(s)	220, 484, 621, 826, 1060, 1135
BstMAI	GTCTC	3 cut(s)	22, 306, 1033
BstMBI	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 575, 584, 605, 725, 734, 1279
BstNI	CCWGG	6 cut(s)	296, 554, 663, 870, 939, 1291
BstNSI	RCATGY	1 cut(s)	1102
BstSCI	CCNGG	6 cut(s)	294, 552, 661, 868, 937, 1289
BstSFI	CTRYAG	2 cut(s)	270, 636
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	4 cut(s)	76, 425, 581, 737
BstX2I	RGATCY	2 cut(s)	217, 1057
BstXI	CCANNNNNNTGG	2 cut(s)	797, 905
BstYI	RGATCY	2 cut(s)	217, 1057
BsuI	GTATCC	1 cut(s)	1166
BsuRI	GGCC	3 cut(s)	465, 526, 897
BtgI	CCRYGG	5 cut(s)	282, 376, 790, 898, 1200
BtsCI	GGATG	2 cut(s)	304, 1106
BtsI	GCAGTG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	606
Cac8I	GCNNGC	3 cut(s)	256, 1104, 1302
Cfr13I	GGNCC	2 cut(s)	524, 686
CseI	GACGC	1 cut(s)	247
Csp6I	GTAC	3 cut(s)	207, 873, 989
CviQI	GTAC	3 cut(s)	207, 873, 989
DdeI	CTNAG	4 cut(s)	103, 738, 946, 999
DpnI	GATC	6 cut(s)	219, 483, 620, 825, 1059, 1134
DpnII	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
Eam1104I	CTCTTC	2 cut(s)	145, 1272
EarI	CTCTTC	2 cut(s)	145, 1272
Ecl136II	GAGCTC	2 cut(s)	7, 361
Eco130I	CCWWGG	3 cut(s)	282, 790, 898
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	2 cut(s)	9, 363
Eco47I	GGWCC	1 cut(s)	686
Eco53kI	GAGCTC	2 cut(s)	7, 361
EcoICRI	GAGCTC	2 cut(s)	7, 361
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRII	CCWGG	6 cut(s)	294, 552, 661, 868, 937, 1289
EcoT14I	CCWWGG	3 cut(s)	282, 790, 898
EcoT38I	GRGCYC	2 cut(s)	9, 363
ErhI	CCWWGG	3 cut(s)	282, 790, 898
FalI	AAGNNNNNCTT	2 cut(s)	1228, 1260
FaqI	GGGAC	2 cut(s)	814, 1171
Fnu4HI	GCNGC	4 cut(s)	65, 414, 570, 726
FokI	GGATG	2 cut(s)	291, 1093
FriOI	GRGCYC	2 cut(s)	9, 363
Fsp4HI	GCNGC	4 cut(s)	65, 414, 570, 726
FspBI	CTAG	2 cut(s)	563, 1064
GluI	GCNGC	4 cut(s)	65, 414, 570, 726
GsaI	CCCAGC	2 cut(s)	42, 1038
GsuI	CTGGAG	2 cut(s)	594, 960
HaeIII	GGCC	3 cut(s)	465, 526, 897
HgaI	GACGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	6 cut(s)	299, 311, 557, 611, 628, 1208
HphI	GGTGA	3 cut(s)	779, 842, 962
Hpy166II	GTNNAC	4 cut(s)	632, 746, 787, 846
Hpy188I	TCNGA	4 cut(s)	172, 710, 1002, 1249
Hpy188III	TCNNGA	4 cut(s)	308, 347, 827, 1081
Hpy8I	GTNNAC	4 cut(s)	632, 746, 787, 846
Hpy99I	CGWCG	1 cut(s)	1087
HpyAV	CCTTC	5 cut(s)	150, 466, 509, 905, 1160
HpyCH4III	ACNGT	2 cut(s)	541, 970
HpyCH4IV	ACGT	1 cut(s)	548
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 575, 584, 605, 725, 734, 1279
HpyF3I	CTNAG	4 cut(s)	103, 738, 946, 999
HpySE526I	ACGT	1 cut(s)	548
Kzo9I	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
LguI	GCTCTTC	1 cut(s)	1272
LmnI	GCTCC	5 cut(s)	4, 12, 280, 358, 575
Lsp1109I	GCAGC	4 cut(s)	76, 425, 581, 737
LweI	GCATC	6 cut(s)	241, 425, 586, 799, 1033, 1115
MaeI	CTAG	2 cut(s)	563, 1064
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	558
MalI	GATC	6 cut(s)	219, 483, 620, 825, 1059, 1134
MboI	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
MboII	GAAGA	4 cut(s)	94, 162, 920, 1289
MfeI	CAATTG	1 cut(s)	1305
MflI	RGATCY	2 cut(s)	217, 1057
MhlI	GDGCHC	3 cut(s)	9, 363, 1000
MluI	ACGCGT	1 cut(s)	256
MlyI	GAGTC	3 cut(s)	308, 566, 637
MseI	TTAA	6 cut(s)	234, 245, 590, 650, 755, 1008
MslI	CAYNNNNRTG	3 cut(s)	795, 855, 903
MspA1I	CMGCKG	1 cut(s)	572
MspR9I	CCNGG	6 cut(s)	296, 554, 663, 870, 939, 1291
MunI	CAATTG	1 cut(s)	1305
Mva1269I	GAATGC	2 cut(s)	49, 346
MvaI	CCWGG	6 cut(s)	296, 554, 663, 870, 939, 1291
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	7 cut(s)	44, 575, 584, 605, 725, 734, 1279
NcoI	CCATGG	3 cut(s)	282, 790, 898
NdeII	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
NlaIV	GGNNCC	3 cut(s)	219, 687, 1059
NmuCI	GTSAC	1 cut(s)	558
NspI	RCATGY	1 cut(s)	1102
PceI	AGGCCT	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	1272
PctI	GAATGC	2 cut(s)	49, 346
PfeI	GAWTC	3 cut(s)	311, 611, 1208
PfoI	TCCNGGA	2 cut(s)	552, 661
PkrI	GCNGC	4 cut(s)	66, 415, 571, 727
PleI	GAGTC	3 cut(s)	307, 565, 636
PpsI	GAGTC	3 cut(s)	307, 565, 636
Psp124BI	GAGCTC	2 cut(s)	9, 363
Psp6I	CCWGG	6 cut(s)	294, 552, 661, 868, 937, 1289
PspFI	CCCAGC	2 cut(s)	38, 1034
PspGI	CCWGG	6 cut(s)	294, 552, 661, 868, 937, 1289
PspN4I	GGNNCC	3 cut(s)	219, 687, 1059
PspPI	GGNCC	2 cut(s)	524, 686
PsuI	RGATCY	2 cut(s)	217, 1057
PvuII	CAGCTG	1 cut(s)	572
RsaI	GTAC	3 cut(s)	208, 874, 990
RsaNI	GTAC	3 cut(s)	207, 873, 989
RseI	CAYNNNNRTG	3 cut(s)	795, 855, 903
SacI	GAGCTC	2 cut(s)	9, 363
SapI	GCTCTTC	1 cut(s)	1272
SaqAI	TTAA	6 cut(s)	234, 245, 590, 650, 755, 1008
SatI	GCNGC	4 cut(s)	65, 414, 570, 726
Sau3AI	GATC	6 cut(s)	217, 481, 618, 823, 1057, 1132
Sau96I	GGNCC	2 cut(s)	524, 686
SchI	GAGTC	3 cut(s)	308, 566, 637
ScrFI	CCNGG	6 cut(s)	296, 554, 663, 870, 939, 1291
SduI	GDGCHC	3 cut(s)	9, 363, 1000
SfaNI	GCATC	6 cut(s)	241, 425, 586, 799, 1033, 1115
SfcI	CTRYAG	2 cut(s)	270, 636
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	3 cut(s)	795, 855, 903
SmlI	CTYRAG	2 cut(s)	467, 1181
SmoI	CTYRAG	2 cut(s)	467, 1181
SpeI	ACTAGT	1 cut(s)	562
SseBI	AGGCCT	1 cut(s)	465
SspMI	CTAG	2 cut(s)	563, 1064
SstI	GAGCTC	2 cut(s)	9, 363
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	6 cut(s)	294, 552, 661, 868, 937, 1289
StyI	CCWWGG	3 cut(s)	282, 790, 898
TaaI	ACNGT	2 cut(s)	541, 970
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	2 cut(s)	422, 1147
TfiI	GAWTC	3 cut(s)	311, 611, 1208
Tru1I	TTAA	6 cut(s)	234, 245, 590, 650, 755, 1008
Tru9I	TTAA	6 cut(s)	234, 245, 590, 650, 755, 1008
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	4 cut(s)	64, 413, 569, 725
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	4 cut(s)	431, 993, 1200, 1290
TspGWI	ACGGA	4 cut(s)	318, 365, 1189, 1205
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	1 cut(s)	686
XagI	CCTNNNNNAGG	1 cut(s)	470
XapI	RAATTY	4 cut(s)	113, 129, 403, 881
XceI	RCATGY	1 cut(s)	1102
XspI	CTAG	2 cut(s)	563, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.