Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013889

Physical Location & Seq

Genomic Coordinates Forward (+)

16456519 .. 16457269

Gene Structure 751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34419.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAATGTTCAAACATGAAACAGCATCAGTACCACGGTTCATACGCAGAGCCAAGGATCTCATTCTCAAGCGGTTTCGCAGCGACTAAGCACGAAATGATCAAGTACAAGGAGGCACCAGTGTCGTCAGATGATTTTGAGTTCGGAGTCGAGAACTTCTCTATGACCACAGCAGATGAAATATTCTTCGATGGCATGATCTTGCCTCTAAAGGAAGAAGTTAACACGACGAAGAGAATGTCAACTCTGAGGGAAGAACTCAGTGAAGAAGATGGTGATTCGCCGAGAAGCAAATCAAAAGGATCGAGTGGTTGGTGGAGAGAGAGATTAGGGCTAGCATTCGTGAGGTCCAAGAAAGATCACAAGAAAAGTTCTTTTTATCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

129

Amino Acids

14.9

Weight (kDa)

6.3

Isoelectric Point (pI)

62.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19200 AT4G34419
fragaria_vesca	FvH4_2g06210
malus_domestica	MD05G1079600.v1.1 MD10G1093900.v1.1
prunus_persica	Prupe.8G123500_v2.0.a1
pyrus_communis	pycom10g07730
rosa_chinensis	RchiOBHm_Chr6g0256981
rosa_laevigata	RLG00000014667
rosa_multiflora	Rmu_sc0000659.1_g000036
rosa_roxburghii	Rroxscaffold_7G00208390
rosa_rugosa	Rorug05G0575900
rosa_samantha	Rh6AG094500 Rh6BG085800 Rh6CG081900 Rh6DG077600
rosa_wichuraiana	Rw6G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	115
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	65, 310
AfaI	GTAC	2 cut(s)	32, 107
AgsI	TTSAA	1 cut(s)	12
AlwI	GGATC	2 cut(s)	65, 310
ApeKI	GCWGC	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	2 cut(s)	287, 374
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	2 cut(s)	185, 266
BcgI	CGANNNNNNTGC	2 cut(s)	105, 139
BclI	TGATCA	1 cut(s)	99
BfaI	CTAG	2 cut(s)	335, 388
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	34
BmtI	GCTAGC	1 cut(s)	338
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	34, 53
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	34, 53
BseMII	CTCAG	2 cut(s)	239, 274
BseNI	ACTGG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	338
Bsp143I	GATC	5 cut(s)	57, 99, 198, 302, 358
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	2 cut(s)	240, 273
BspLI	GGNNCC	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	2 cut(s)	65, 310
BspT107I	GGYRCC	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	34, 53
BssMI	GATC	5 cut(s)	57, 99, 198, 302, 358
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	87, 248, 260
BstDSI	CCRYGG	1 cut(s)	34
BstKTI	GATC	5 cut(s)	60, 102, 201, 305, 361
BstMBI	GATC	5 cut(s)	57, 99, 198, 302, 358
BstV1I	GCAGC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	57
BstYI	RGATCY	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	34
BtsIMutI	CAGTG	2 cut(s)	126, 268
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	31, 106
CviAII	CATG	2 cut(s)	16, 196
CviJI	RGCY	2 cut(s)	52, 334
CviKI_1	RGCY	2 cut(s)	52, 334
CviQI	GTAC	2 cut(s)	31, 106
DdeI	CTNAG	3 cut(s)	87, 248, 260
DpnI	GATC	5 cut(s)	59, 101, 200, 304, 360
DpnII	GATC	5 cut(s)	57, 99, 198, 302, 358
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	19, 199
FaiI	YATR	4 cut(s)	17, 43, 164, 197
FatI	CATG	2 cut(s)	15, 195
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	335, 388
GluI	GCNGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	19, 199
HincII	GTYRAC	2 cut(s)	223, 243
HindII	GTYRAC	2 cut(s)	223, 243
HinfI	GANTC	2 cut(s)	147, 278
HpaI	GTTAAC	1 cut(s)	223
HphI	GGTGA	2 cut(s)	287, 374
Hpy166II	GTNNAC	2 cut(s)	223, 243
Hpy188I	TCNGA	3 cut(s)	130, 146, 249
Hpy188III	TCNNGA	2 cut(s)	151, 343
Hpy8I	GTNNAC	2 cut(s)	223, 243
Hpy99I	CGWCG	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	87, 248, 260
Hsp92II	CATG	2 cut(s)	19, 199
Ksp22I	TGATCA	1 cut(s)	99
KspAI	GTTAAC	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	57, 99, 198, 302, 358
LpnPI	CCDG	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	335, 388
MalI	GATC	5 cut(s)	59, 101, 200, 304, 360
MboI	GATC	5 cut(s)	57, 99, 198, 302, 358
MboII	GAAGA	6 cut(s)	178, 227, 244, 266, 278, 281
MflI	RGATCY	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	4 cut(s)	106, 216, 243, 339
MseI	TTAA	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	338
NdeII	GATC	5 cut(s)	57, 99, 198, 302, 358
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	2 cut(s)	19, 199
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	309
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	57
RsaI	GTAC	2 cut(s)	32, 107
RsaNI	GTAC	2 cut(s)	31, 106
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	5 cut(s)	57, 99, 198, 302, 358
Sau96I	GGNCC	1 cut(s)	348
SchI	GAGTC	1 cut(s)	156
SetI	ASST	1 cut(s)	350
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	183
SspMI	CTAG	2 cut(s)	335, 388
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	3 cut(s)	150, 189, 305
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	126, 268
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	30, 32, 192
TspRI	CASTG	2 cut(s)	126, 268
VpaK11BI	GGWCC	1 cut(s)	348
XspI	CTAG	2 cut(s)	335, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.