Rroxscaffold_7G00208390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013889
Physical Location & Seq
Reverse (-)
58414146 .. 58414923
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208390.1

Sequence Viewer

Length: 528 bp
ATGGATCCTAGAATTTCCTTCTCCAATGACTTTGCAGACACTCAACAAGCCATCAAGCATGAAGCCATCTACAGAGAAGCTCCCGTTTCTGCAGATTTCGAGTTCTCTGTGAACAATTTCGGGATGATAGCTGCAGATGAAGTCATATTTCAGGGCACATTGTTGCCCTTGAAGGACAATGGTACCAACCAAGGAGGGAAGACTACTTTAAGAGATGAGTTACTGGTTAATGATGATTATGGAGACATGTTATCGAGGCCATCAAGGAGTTTAAGCCGGTGGAAGGAGCGATTGGGACTCAAAAGATCTCAGGTTGTTCCTAAGAAAACAGATAGGAGTCATGGGGGTCTGGAAAGTATAGTGGAAGAAAGAAGGCATGTGTTTGTTCATGAGGCTGAATTTCTGTTTGAAAGGAGGATTGAGTTGCAGAAATGGTGGAATCTGATGCAAGATGAGAAGCTCTTACTCTTTCTATGCAAGGAACATTTAGTTCCTGCTAACTTTGAAGGTATGGATAAAGTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.27

Weight (kDa)

5.58

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19200 AT4G34419
fragaria_vesca FvH4_2g06210
malus_domestica MD05G1079600.v1.1 MD10G1093900.v1.1
prunus_persica Prupe.8G123500_v2.0.a1
pyrus_communis pycom10g07730
rosa_chinensis RchiOBHm_Chr6g0256981
rosa_laevigata RLG00000014667
rosa_multiflora Rmu_sc0000659.1_g000036
rosa_roxburghii Rroxscaffold_7G00208390
rosa_rugosa Rorug05G0575900
rosa_samantha Rh6AG094500 Rh6BG085800 Rh6CG081900 Rh6DG077600
rosa_wichuraiana Rw6G008090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 12, 398
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 283
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 172, 410, 506
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 3 cut(s) 80, 131, 460
AluI AGCT 3 cut(s) 80, 131, 460
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 12, 398
Asp700I GAANNNNTTC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 118
BccI CCATC 3 cut(s) 59, 74, 268
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 3 cut(s) 70, 90, 132
BglII AGATCT 1 cut(s) 305
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 6, 184
BmsI GCATC 1 cut(s) 435
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 4, 305
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 322
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 6, 184
BspMAI CTGCAG 2 cut(s) 94, 136
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 2 cut(s) 4, 305
BssT1I CCWWGG 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 309, 321
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 7, 308
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 4, 305
BstNSI RCATGY 2 cut(s) 250, 380
BstSFI CTRYAG 3 cut(s) 70, 90, 132
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 4, 305
BstYI RGATCY 2 cut(s) 4, 305
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 1 cut(s) 129
CciI TCATGA 1 cut(s) 388
Cfr10I RCCGGY 1 cut(s) 276
Csp6I GTAC 1 cut(s) 183
CviAII CATG 5 cut(s) 59, 247, 341, 377, 389
CviJI RGCY 8 cut(s) 50, 65, 80, 131, 259, 276, 395, 460
CviKI_1 RGCY 8 cut(s) 50, 65, 80, 131, 259, 276, 395, 460
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 309, 321
DpnI GATC 2 cut(s) 6, 307
DpnII GATC 2 cut(s) 4, 305
Eco130I CCWWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 5 cut(s) 62, 250, 344, 380, 392
FaqI GGGAC 1 cut(s) 309
FatI CATG 5 cut(s) 58, 246, 340, 376, 388
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 277
Hin1II CATG 5 cut(s) 62, 250, 344, 380, 392
HinfI GANTC 3 cut(s) 297, 337, 439
HpaII CCGG 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 444
Hpy188III TCNNGA 3 cut(s) 121, 350, 389
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 5 cut(s) 28, 166, 277, 366, 500
HpyCH4V TGCA 6 cut(s) 35, 92, 134, 427, 448, 477
HpyF3I CTNAG 2 cut(s) 309, 321
Hsp92II CATG 5 cut(s) 62, 250, 344, 380, 392
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 4, 305
LmnI GCTCC 2 cut(s) 85, 286
LpnPI CCDG 6 cut(s) 137, 209, 290, 296, 335, 507
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 435
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 219
MalI GATC 2 cut(s) 6, 307
MboI GATC 2 cut(s) 4, 305
MboII GAAGA 2 cut(s) 211, 377
MflI RGATCY 2 cut(s) 4, 305
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 3 cut(s) 12, 115, 398
MlyI GAGTC 2 cut(s) 291, 346
MnlI CCTC 4 cut(s) 188, 249, 385, 408
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 4 cut(s) 209, 228, 272, 526
MspI CCGG 1 cut(s) 277
NdeII GATC 2 cut(s) 4, 305
NlaIII CATG 5 cut(s) 62, 250, 344, 380, 392
NlaIV GGNNCC 2 cut(s) 6, 184
NspI RCATGY 2 cut(s) 250, 380
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 291, 345
PpsI GAGTC 2 cut(s) 291, 345
PscI ACATGT 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 6, 184
PstI CTGCAG 2 cut(s) 94, 136
PsuI RGATCY 2 cut(s) 4, 305
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SaqAI TTAA 4 cut(s) 209, 228, 272, 526
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 4, 305
SchI GAGTC 2 cut(s) 291, 346
SduI GDGCHC 1 cut(s) 158
SetI ASST 5 cut(s) 82, 133, 315, 462, 511
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 3 cut(s) 70, 90, 132
Sse9I AATT 3 cut(s) 12, 115, 398
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 2 cut(s) 99, 254
TasI AATT 3 cut(s) 12, 115, 398
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 4 cut(s) 209, 228, 272, 526
Tru9I TTAA 4 cut(s) 209, 228, 272, 526
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 75, 153, 377
XapI RAATTY 2 cut(s) 12, 398
XceI RCATGY 2 cut(s) 250, 380
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.