Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013889

Physical Location & Seq

Genomic Coordinates Reverse (-)

9365129 .. 9365709

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGATCCTAGAATCTCCTTCTCCAATGACTTTGCAGACACTCAACAGGCCATCAAGCACGAATCAAGCTACCGAGAAGCACCCGTCTCATCGGATTTCGAATTCTCCGTGGACAACTTTGGTATGATCTCGGCGGACGAGATCATATTCAAGGGCACATTGTTGCCCTTAAAGGATAATGGTGCCAACAACCAGCCAGGGAATAAGACTACTACTTTGAGAGATGAGCTACTTGCTGATGATGAGGATTATGGGGATGTGTTGCCAAGAGCAACAAATAGTTTGAACAGATGGAAGGAGCGTTTGGGGCTCAAGAGGGCTCAAATTGTTCCGAAAAAAGGCGATAGAGGTCATTCGGTTTTGGAGAGGATCGCTGAAGAGAGGAGGCCTGTGTTTGTTCATGAGGCTCTTATTAGCAAGGAAAGCCAGGAATTTCTATTTGGAGGGTTCAATTGCAGAGATGATGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.73

Weight (kDa)

5.01

Isoelectric Point (pI)

27.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19200 AT4G34419
fragaria_vesca	FvH4_2g06210
malus_domestica	MD05G1079600.v1.1 MD10G1093900.v1.1
prunus_persica	Prupe.8G123500_v2.0.a1
pyrus_communis	pycom10g07730
rosa_chinensis	RchiOBHm_Chr6g0256981
rosa_laevigata	RLG00000014667
rosa_multiflora	Rmu_sc0000659.1_g000036
rosa_roxburghii	Rroxscaffold_7G00208390
rosa_rugosa	Rorug05G0575900
rosa_samantha	Rh6AG094500 Rh6BG085800 Rh6CG081900 Rh6DG077600
rosa_wichuraiana	Rw6G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	12, 377
AcsI	RAATTY	2 cut(s)	101, 431
AcuI	CTGAAG	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	151, 286, 451
AjnI	CCWGG	2 cut(s)	196, 426
AjuI	GAANNNNNNNTTGG	4 cut(s)	287, 319, 423, 455
AluBI	AGCT	2 cut(s)	69, 229
AluI	AGCT	2 cut(s)	69, 229
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	12, 377
AoxI	GGCC	2 cut(s)	48, 386
ApoI	RAATTY	2 cut(s)	101, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AsuII	TTCGAA	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	312, 322
BccI	CCATC	3 cut(s)	59, 285, 458
BciT130I	CCWGG	2 cut(s)	198, 428
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	9
Bme1390I	CCNGG	2 cut(s)	198, 428
BmiI	GGNNCC	2 cut(s)	6, 184
BmrFI	CCNGG	2 cut(s)	198, 428
Bpu14I	TTCGAA	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	108, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	198, 428
BseDI	CCNNGG	2 cut(s)	108, 197
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	50, 388
BshNI	GGYRCC	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	50, 388
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	3 cut(s)	158, 312, 322
Bsp143I	GATC	4 cut(s)	4, 126, 141, 369
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	2 cut(s)	50, 388
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	6, 184
BspPI	GGATC	2 cut(s)	12, 377
BspT104I	TTCGAA	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	108, 197
BssMI	GATC	4 cut(s)	4, 126, 141, 369
Bst2UI	CCWGG	2 cut(s)	198, 428
Bst6I	CTCTTC	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	4 cut(s)	7, 129, 144, 372
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	4 cut(s)	4, 126, 141, 369
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 423
BstNI	CCWGG	2 cut(s)	198, 428
BstSCI	CCNGG	2 cut(s)	196, 426
BstSLI	GKGCMC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	50, 388
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	262
CciI	TCATGA	1 cut(s)	400
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	9 cut(s)	50, 69, 196, 229, 310, 320, 388, 407, 426
CviKI_1	RGCY	9 cut(s)	50, 69, 196, 229, 310, 320, 388, 407, 426
DpnI	GATC	4 cut(s)	6, 128, 143, 371
DpnII	GATC	4 cut(s)	4, 126, 141, 369
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	149
Eco147I	AGGCCT	1 cut(s)	388
Eco24I	GRGCYC	2 cut(s)	312, 322
Eco57I	CTGAAG	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	196, 426
EcoT38I	GRGCYC	2 cut(s)	312, 322
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	404
FaiI	YATR	4 cut(s)	125, 146, 252, 402
FatI	CATG	1 cut(s)	400
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	2 cut(s)	312, 322
FspBI	CTAG	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	50, 388
Hin1II	CATG	1 cut(s)	404
HinfI	GANTC	3 cut(s)	12, 62, 468
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	94, 333, 473
Hpy188III	TCNNGA	2 cut(s)	313, 401
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	28, 289
HpyCH4V	TGCA	2 cut(s)	35, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 423
Hsp92II	CATG	1 cut(s)	404
Kzo9I	GATC	4 cut(s)	4, 126, 141, 369
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	7 cut(s)	32, 183, 206, 210, 402, 413, 440
MaeI	CTAG	1 cut(s)	9
MalI	GATC	4 cut(s)	6, 128, 143, 371
MboI	GATC	4 cut(s)	4, 126, 141, 369
MboII	GAAGA	1 cut(s)	389
MfeI	CAATTG	1 cut(s)	451
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	158, 312, 322
MluCI	AATT	4 cut(s)	101, 324, 431, 451
MnlI	CCTC	8 cut(s)	238, 309, 341, 360, 375, 378, 397, 437
MseI	TTAA	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	198, 428
MunI	CAATTG	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	198, 428
MwoI	GCNNNNNNNGC	2 cut(s)	307, 423
NdeII	GATC	4 cut(s)	4, 126, 141, 369
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	2 cut(s)	6, 184
NmeAIII	GCCGAG	1 cut(s)	110
NspV	TTCGAA	1 cut(s)	99
PagI	TCATGA	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	12, 62, 468
Psp6I	CCWGG	2 cut(s)	196, 426
PspGI	CCWGG	2 cut(s)	196, 426
PspN4I	GGNNCC	2 cut(s)	6, 184
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	4, 126, 141, 369
ScrFI	CCNGG	2 cut(s)	198, 428
SduI	GDGCHC	3 cut(s)	158, 312, 322
SetI	ASST	3 cut(s)	71, 231, 352
SfuI	TTCGAA	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	101, 324, 431, 451
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	1 cut(s)	134
SspMI	CTAG	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	196, 426
TaqI	TCGA	1 cut(s)	99
TasI	AATT	4 cut(s)	101, 324, 431, 451
TfiI	GAWTC	3 cut(s)	12, 62, 468
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	97
XapI	RAATTY	2 cut(s)	101, 431
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.