Rw6G008090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013889
Physical Location & Seq
Forward (+)
13722180 .. 13723965
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G008090.1

Sequence Viewer

Length: 414 bp
ATGGATCCTAGAATTTCCTTCTCCAATGACTTTGCAGACACTCAACAAGCCATCAAGCATGAAGCCATCTACAGGGAAGCTCCCGTTTCTGCAGATTTCGAGTTCTCTGTGAACAATTTCGGGATGATAGCTGCGGATGAAGTCATATTTCAGGGCACATTGTTGCCCTTGAAGGACAATGGTACCAACCAAGGAGGGAAGACTACTTTAAGAGATGAGTTACTGGTTAATGATGATTATGGAGACATGTTTTCGAGGCCATCAAGGAGTTTAAGCCGGTGGAAAGAGCGATTGGGACTCAAAAGATCTCAGATTGTTCCTAAGAAAACAGATAGGAGTCATGGGGGTCTGGAAAGTATAGTGGAAGAAAGAAGGCATGCATTCTTGTCTTCTTCTTTGGAGGAGATATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.58

Weight (kDa)

5.39

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19200 AT4G34419
fragaria_vesca FvH4_2g06210
malus_domestica MD05G1079600.v1.1 MD10G1093900.v1.1
prunus_persica Prupe.8G123500_v2.0.a1
pyrus_communis pycom10g07730
rosa_chinensis RchiOBHm_Chr6g0256981
rosa_laevigata RLG00000014667
rosa_multiflora Rmu_sc0000659.1_g000036
rosa_roxburghii Rroxscaffold_7G00208390
rosa_rugosa Rorug05G0575900
rosa_samantha Rh6AG094500 Rh6BG085800 Rh6CG081900 Rh6DG077600
rosa_wichuraiana Rw6G008090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 12
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 2 cut(s) 80, 131
AluI AGCT 2 cut(s) 80, 131
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 12
Asp700I GAANNNNTTC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 158
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 2 cut(s) 206, 381
BbvI GCAGC 1 cut(s) 118
BccI CCATC 3 cut(s) 59, 74, 268
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 2 cut(s) 70, 90
BglII AGATCT 1 cut(s) 305
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmiI GGNNCC 2 cut(s) 6, 184
BpiI GAAGAC 2 cut(s) 206, 381
BsaJI CCNNGG 1 cut(s) 190
BsaXI ACNNNNNCTCC 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 2 cut(s) 129, 142
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 228
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 309
BsmI GAATGC 1 cut(s) 380
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 2 cut(s) 4, 305
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 6, 184
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 2 cut(s) 4, 305
BssT1I CCWWGG 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 309, 321
BstF5I GGATG 2 cut(s) 129, 142
BstKTI GATC 2 cut(s) 7, 308
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 4, 305
BstNSI RCATGY 2 cut(s) 250, 380
BstSFI CTRYAG 2 cut(s) 70, 90
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 2 cut(s) 206, 381
BstX2I RGATCY 2 cut(s) 4, 305
BstYI RGATCY 2 cut(s) 4, 305
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 2 cut(s) 129, 142
Cac8I GCNNGC 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 276
Csp6I GTAC 1 cut(s) 183
CviAII CATG 4 cut(s) 59, 247, 341, 377
CviJI RGCY 6 cut(s) 50, 65, 80, 131, 259, 276
CviKI_1 RGCY 6 cut(s) 50, 65, 80, 131, 259, 276
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 309, 321
DpnI GATC 2 cut(s) 6, 307
DpnII GATC 2 cut(s) 4, 305
Eco130I CCWWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 190
FaeI CATG 4 cut(s) 62, 250, 344, 380
FaiI YATR 8 cut(s) 60, 146, 240, 248, 342, 359, 378, 409
FaqI GGGAC 1 cut(s) 309
FatI CATG 4 cut(s) 58, 246, 340, 376
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 136, 149
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 277
Hin1II CATG 4 cut(s) 62, 250, 344, 380
HinfI GANTC 2 cut(s) 297, 337
HpaII CCGG 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 2 cut(s) 121, 350
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 28, 166, 366
HpyCH4V TGCA 3 cut(s) 35, 92, 380
HpyF3I CTNAG 2 cut(s) 309, 321
Hsp92II CATG 4 cut(s) 62, 250, 344, 380
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 4, 305
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 5 cut(s) 58, 137, 209, 290, 335
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 219
MalI GATC 2 cut(s) 6, 307
MboI GATC 2 cut(s) 4, 305
MboII GAAGA 4 cut(s) 211, 377, 381, 384
MflI RGATCY 2 cut(s) 4, 305
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 2 cut(s) 12, 115
MlyI GAGTC 2 cut(s) 291, 346
MnlI CCTC 3 cut(s) 188, 249, 394
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 3 cut(s) 209, 228, 272
MspI CCGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 380
NdeII GATC 2 cut(s) 4, 305
NlaIII CATG 4 cut(s) 62, 250, 344, 380
NlaIV GGNNCC 2 cut(s) 6, 184
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 2 cut(s) 250, 380
PaeI GCATGC 1 cut(s) 380
PciI ACATGT 1 cut(s) 246
PctI GAATGC 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 291, 345
PpsI GAGTC 2 cut(s) 291, 345
PscI ACATGT 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 6, 184
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 2 cut(s) 4, 305
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
SaqAI TTAA 3 cut(s) 209, 228, 272
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 4, 305
SchI GAGTC 2 cut(s) 291, 346
SduI GDGCHC 1 cut(s) 158
SetI ASST 2 cut(s) 82, 133
SfcI CTRYAG 2 cut(s) 70, 90
SphI GCATGC 1 cut(s) 380
Sse9I AATT 2 cut(s) 12, 115
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 190
TaqI TCGA 2 cut(s) 99, 254
TasI AATT 2 cut(s) 12, 115
Tru1I TTAA 3 cut(s) 209, 228, 272
Tru9I TTAA 3 cut(s) 209, 228, 272
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 75, 153
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 250, 380
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.