Prupe.8G123500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013889
Physical Location & Seq
Reverse (-)
14933059 .. 14934318
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G123500.1

Sequence Viewer

Length: 471 bp
ATGGATCCTAGGATTTCCTTCTCCAATGACTTTGCAGACACTCAACAAGCCATCAAGCATGAAACCAGCTATAGAGAAGCGCCCGTTTCTTCGGATTTCGAATTCTCCGTGAACAACTTTGGAATGATCTCGGCGGATGAGATTATGTTCAAGGGCACATTGTTGCCCTTGAAGGATAATGGTGCCAACCAGCTAGGGAAGACTACTACTTTGAGAGATGAGCTGCTTGTTGATGATGATTATGGGGATGTGTTGCCAAGGGCACCAAAGAGTTTAAGCAGGTGGAAGGAGCGTTTGGGCCTCAAGAGGGCTCAAGTTGTTCCCAAAAAAGCTGACAGAAGTCATTCTGTTCTGGAGAGGATAGCTGAAGAGAGGAGGCCTGTGTTTGTTCATGAGGCTGTGCTTATTAGCAAGGAAAGCCAGGATTTTCTATTTGGAGGAGGGTTAAGTTGCAGAGGTGATGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.5

Weight (kDa)

5.65

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19200 AT4G34419
fragaria_vesca FvH4_2g06210
malus_domestica MD05G1079600.v1.1 MD10G1093900.v1.1
prunus_persica Prupe.8G123500_v2.0.a1
pyrus_communis pycom10g07730
rosa_chinensis RchiOBHm_Chr6g0256981
rosa_laevigata RLG00000014667
rosa_multiflora Rmu_sc0000659.1_g000036
rosa_roxburghii Rroxscaffold_7G00208390
rosa_rugosa Rorug05G0575900
rosa_samantha Rh6AG094500 Rh6BG085800 Rh6CG081900 Rh6DG077600
rosa_wichuraiana Rw6G008090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 270
AccB1I GGYRCC 2 cut(s) 182, 262
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 387
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 151, 172
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 5 cut(s) 69, 193, 223, 332, 365
AluI AGCT 5 cut(s) 69, 193, 223, 332, 365
AlwI GGATC 1 cut(s) 12
AoxI GGCC 2 cut(s) 298, 377
ApeKI GCWGC 1 cut(s) 223
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
Asp700I GAANNNNTTC 1 cut(s) 343
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 99
AvrII CCTAGG 1 cut(s) 8
BaeGI GKGCMC 2 cut(s) 158, 265
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 182, 262
BanII GRGCYC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 59, 455
BciT130I CCWGG 1 cut(s) 422
BfaI CTAG 2 cut(s) 9, 194
BfmI CTRYAG 1 cut(s) 70
BfoI RGCGCY 1 cut(s) 83
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 1 cut(s) 224
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 3 cut(s) 6, 184, 264
BmrFI CCNGG 1 cut(s) 422
BoxI GACNNNNGTC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 2 cut(s) 287, 297
BsaJI CCNNGG 2 cut(s) 8, 257
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 8, 257
BseGI GGATG 2 cut(s) 142, 253
BseLI CCNNNNNNNGG 1 cut(s) 307
BseRI GAGGAG 2 cut(s) 388, 453
BseSI GKGCMC 2 cut(s) 158, 265
BseXI GCAGC 1 cut(s) 210
BshFI GGCC 2 cut(s) 300, 379
BshNI GGYRCC 2 cut(s) 182, 262
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 2 cut(s) 300, 379
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 3 cut(s) 158, 265, 313
Bsp143I GATC 2 cut(s) 4, 126
BspACI CCGC 1 cut(s) 134
BspANI GGCC 2 cut(s) 300, 379
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 6, 184, 264
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 182, 262
BssECI CCNNGG 2 cut(s) 8, 257
BssMI GATC 2 cut(s) 4, 126
BssT1I CCWWGG 2 cut(s) 8, 257
Bst2UI CCWGG 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 99
BstF5I GGATG 2 cut(s) 142, 253
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 2 cut(s) 7, 129
BstMBI GATC 2 cut(s) 4, 126
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 1 cut(s) 422
BstPAI GACNNNNGTC 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 2 cut(s) 158, 265
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 300, 379
BtsCI GGATG 2 cut(s) 142, 253
BveI ACCTGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 298
CviAII CATG 2 cut(s) 59, 392
DpnI GATC 2 cut(s) 6, 128
DpnII GATC 2 cut(s) 4, 126
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EciI GGCGGA 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 8, 257
Eco147I AGGCCT 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 2 cut(s) 8, 257
EcoT38I GRGCYC 1 cut(s) 313
ErhI CCWWGG 2 cut(s) 8, 257
FaeI CATG 2 cut(s) 62, 395
FaiI YATR 5 cut(s) 60, 72, 146, 243, 393
FatI CATG 2 cut(s) 58, 391
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 149, 260
FriOI GRGCYC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 9, 194
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 374
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 2 cut(s) 300, 379
HhaI GCGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 62, 395
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 3 cut(s) 304, 353, 392
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 28, 166, 280
HpyCH4V TGCA 2 cut(s) 35, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
Hsp92II CATG 2 cut(s) 62, 395
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 4, 126
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 7 cut(s) 79, 203, 265, 338, 393, 407, 434
Lsp1109I GCAGC 1 cut(s) 210
MaeI CTAG 2 cut(s) 9, 194
MalI GATC 2 cut(s) 6, 128
MboI GATC 2 cut(s) 4, 126
MboII GAAGA 3 cut(s) 81, 211, 380
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 158, 265, 313
MluCI AATT 1 cut(s) 101
MnlI CCTC 9 cut(s) 300, 311, 351, 366, 369, 388, 431, 434, 449
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 2 cut(s) 275, 446
MspR9I CCNGG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 417
NdeII GATC 2 cut(s) 4, 126
NlaIII CATG 2 cut(s) 62, 395
NlaIV GGNNCC 3 cut(s) 6, 184, 264
NmeAIII GCCGAG 1 cut(s) 110
NspV TTCGAA 1 cut(s) 99
PagI TCATGA 1 cut(s) 391
PaqCI CACCTGC 1 cut(s) 270
PceI AGGCCT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 343
PkrI GCNGC 1 cut(s) 225
PshAI GACNNNNGTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 6, 184, 264
PspPI GGNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 2 cut(s) 275, 446
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 2 cut(s) 4, 126
Sau96I GGNCC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 3 cut(s) 158, 265, 313
SetI ASST 7 cut(s) 71, 195, 225, 284, 334, 367, 460
SfcI CTRYAG 1 cut(s) 70
SfuI TTCGAA 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 302, 312
SmoI CTYRAG 2 cut(s) 302, 312
Sse9I AATT 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 379
SsiI CCGC 1 cut(s) 134
SspMI CTAG 2 cut(s) 9, 194
StuI AGGCCT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 2 cut(s) 8, 257
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 101
Tru1I TTAA 2 cut(s) 275, 446
Tru9I TTAA 2 cut(s) 275, 446
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 75, 380
TspGWI ACGGA 1 cut(s) 97
XapI RAATTY 1 cut(s) 101
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 2 cut(s) 9, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.