FvH4_2g06210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013889
Physical Location & Seq
Forward (+)
5161178 .. 5162336
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06210.t1

Sequence Viewer

Length: 423 bp
ATGGATCCTAGGATTTCCTTCTCCAATGACTTTGCAGACACTCAACAAGCCATCAAGCATGAAGCCATCTACCGAGAAGCGCCAGTTTCTGCAGATTTCGAGTTCTCTGTGAACAACTTCGGGATGATAGCTGCGGATGAAGTCATATTTCAGGGCACATTGTTGCCCTTGAAGGACAATGGTGCCAACCAGGGAGGGAAGACTACTCTAAGGGATGAGTTACTGGCTGAGGATGATTATAGTGACAGGTTTTCGAGGCCATCAAGGAGTCTAAGCCGGTGGAAGGAACGATTGGGACTTAAGAGGTCTCAGATTGTTCCAAAGAAAACAGATAGGAGTACTCATGGGGGTCTGGAAAGCATAGTGGAAGAGAGGAGGCATGTGTTTGTTCATGAGGCTATACTTATTAGCAAGGAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.89

Weight (kDa)

5.82

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19200 AT4G34419
fragaria_vesca FvH4_2g06210
malus_domestica MD05G1079600.v1.1 MD10G1093900.v1.1
prunus_persica Prupe.8G123500_v2.0.a1
pyrus_communis pycom10g07730
rosa_chinensis RchiOBHm_Chr6g0256981
rosa_laevigata RLG00000014667
rosa_multiflora Rmu_sc0000659.1_g000036
rosa_roxburghii Rroxscaffold_7G00208390
rosa_rugosa Rorug05G0575900
rosa_samantha Rh6AG094500 Rh6BG085800 Rh6CG081900 Rh6DG077600
rosa_wichuraiana Rw6G008090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 182
AciI CCGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 340
AfiI CCNNNNNNNGG 1 cut(s) 283
AflII CTTAAG 1 cut(s) 299
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 1 cut(s) 82
AvrII CCTAGG 1 cut(s) 8
BaeGI GKGCMC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 118
BccI CCATC 3 cut(s) 59, 74, 268
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 9, 421
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 299
BisI GCNGC 1 cut(s) 132
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 2 cut(s) 6, 184
BmrFI CCNGG 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 8, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse118I RCCGGY 1 cut(s) 276
Bse1I ACTGG 2 cut(s) 83, 228
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 2 cut(s) 8, 190
BseGI GGATG 4 cut(s) 129, 142, 220, 238
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 219, 323
BseNI ACTGG 2 cut(s) 83, 228
BseRI GAGGAG 1 cut(s) 388
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 309
BsnI GGCC 1 cut(s) 259
Bso31I GGTCTC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 2 cut(s) 220, 322
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 6, 184
BspMAI CTGCAG 1 cut(s) 94
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 182
BspTI CTTAAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 276
BsrI ACTGG 2 cut(s) 83, 228
BssAI RCCGGY 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 8, 190
BssMI GATC 1 cut(s) 4
BssT1I CCWWGG 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 363
BstAFI CTTAAG 1 cut(s) 299
BstDEI CTNAG 4 cut(s) 209, 228, 272, 309
BstF5I GGATG 4 cut(s) 129, 142, 220, 238
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 90
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 259
BtsCI GGATG 4 cut(s) 129, 142, 220, 238
CaiI CAGNNNCTG 1 cut(s) 89
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 276
Csp6I GTAC 1 cut(s) 339
CviAII CATG 4 cut(s) 59, 344, 380, 392
CviJI RGCY 7 cut(s) 50, 65, 131, 227, 259, 276, 398
CviKI_1 RGCY 7 cut(s) 50, 65, 131, 227, 259, 276, 398
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 4 cut(s) 209, 228, 272, 309
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
FaeI CATG 4 cut(s) 62, 347, 383, 395
FaiI YATR 8 cut(s) 60, 146, 240, 345, 362, 381, 393, 401
FaqI GGGAC 1 cut(s) 309
FatI CATG 4 cut(s) 58, 343, 379, 391
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 4 cut(s) 136, 149, 227, 245
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 9, 421
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 277
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 62, 347, 383, 395
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 268
HpaII CCGG 1 cut(s) 277
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 3 cut(s) 121, 353, 392
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 28, 166, 277
HpyCH4V TGCA 2 cut(s) 35, 92
HpyF3I CTNAG 4 cut(s) 209, 228, 272, 309
Hsp92II CATG 4 cut(s) 62, 347, 383, 395
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 96, 137, 176, 203, 209, 232, 290, 338
Lsp1109I GCAGC 1 cut(s) 118
MaeI CTAG 2 cut(s) 9, 421
MaeIII GTNAC 2 cut(s) 219, 242
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 211, 380
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 158
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 7 cut(s) 188, 223, 249, 297, 366, 369, 388
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 1 cut(s) 300
MspCI CTTAAG 1 cut(s) 299
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
NdeII GATC 1 cut(s) 4
NlaIII CATG 4 cut(s) 62, 347, 383, 395
NlaIV GGNNCC 2 cut(s) 6, 184
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 383
PagI TCATGA 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 276
PpsI GAGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 6, 184
PstI CTGCAG 1 cut(s) 94
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 133, 251, 308, 422
SfcI CTRYAG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SsiI CCGC 1 cut(s) 134
SspMI CTAG 2 cut(s) 9, 421
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 8
TaqI TCGA 2 cut(s) 99, 254
TatI WGTACW 1 cut(s) 338
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 75, 153, 380
Vha464I CTTAAG 1 cut(s) 299
XceI RCATGY 1 cut(s) 383
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 2 cut(s) 9, 421
ZrmI AGTACT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.