Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008070

Physical Location & Seq

Genomic Coordinates Forward (+)

16498391 .. 16500174

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAATGGAGCTATAGGAGGTGACCTTTTGCTCAATTTTCCTGACATGTCGGTCCTAGAGCGCCAAAGGGCTCACCTCAAGTACCTCAATCCCACCTTTGATTCTCCTCTCGCCGGCTTCTTTGCCGATTCTTCAATGATTACCGGCGGCGAGATGGACAGCTATCTTTCGACTGCCGGTTTGAATCTTCCGATGATGTACGGTGAGACGACGGTGGAAGGTGATTCAAGACTCTCAATTTCGCCGGAAACGACGCTTGGGACTGGAAATTTCAAGAAACGGAAGTTTGATACAGAGACTAAGGATTGTAATGAGAAGAAGAAGAAGATGACGATGAACAGAGATGACCTAGTAGAAGAAGGAGAAGAAGAGAAGTCGAAAATAACAGAGCAAAACAATGGGAGCACAAAAAGCATCAAGAAGATGAAACACAAAGCCAAGAAAGAAGAGAACAATTTCTCTAATGATTCATCTAAAGTGACGAAGGAATTGGAGAAAACGGATTATATTCATGTTCGTGCACGACGAGGCCAAGCCACTGATAGTCACAGCATAGCAGAACGAGTTAGAAGAGAAAAGATCAGTGAGAGAATGAAGTTTCTACAAGATTTGGTTCCTGGATGCGACAAGATCACAGGCAAAGCAGGGATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTTGCCAAAGAGGTTGCCTCAACTCCAATGACTGTGGTGCCATCTCCTGAAATGGTTCTTTCCGGTTATTCTCATGAGATGGTTCACTCTGGTTATTCTAGTGAGATGGTTAACTCCGGTTACCTTCATGTCAATCCAATGCAGCAAGTGAATACCAGTTCTGATCCATTGTCATGCTTCAACAATGGCGAAGCTCCTTCGATGTGGGACTCTCATGTGCAGAATCTCTATGGCAATTTAGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

335

Amino Acids

37.54

Weight (kDa)

5.6

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	182 - 229	1.1e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	187 - 232	9.7e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34530
fragaria_vesca	FvH4_2g09030 FvH4_2g09030
malus_domestica	MD05G1065100.v1.1 MD10G1074000.v1.1
prunus_persica	Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1
pyrus_communis	pycom05g05640 pycom10g05820
rosa_chinensis	RchiOBHm_Chr6g0264701
rosa_laevigata	RLG00000014234
rosa_multiflora	Rmu_sc0000546.1_g000026
rosa_roxburghii	Rroxscaffold_175G00432010 Rroxscaffold_7G00203210
rosa_rugosa	Rorug06G0014800
rosa_samantha	Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600
rosa_wichuraiana	Rw6G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	796
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	917
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	668
AfaI	GTAC	2 cut(s)	83, 200
AfiI	CCNNNNNNNGG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	135, 184, 228, 274, 940
AjnI	CCWGG	1 cut(s)	616
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	3 cut(s)	11, 162, 953
AluI	AGCT	3 cut(s)	11, 162, 953
Alw21I	GWGCWC	2 cut(s)	407, 523
Alw26I	GTCTC	4 cut(s)	200, 290, 682, 684
Alw44I	GTGCAC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	917
AoxI	GGCC	2 cut(s)	529, 734
ApaLI	GTGCAC	1 cut(s)	519
ApeKI	GCWGC	1 cut(s)	901
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
Asp700I	GAANNNNTTC	2 cut(s)	455, 813
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	32, 65, 215, 233
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	523
BanI	GGYRCC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	407, 523
BbvI	GCAGC	1 cut(s)	913
BccI	CCATC	4 cut(s)	148, 808, 832, 859
BciT130I	CCWGG	1 cut(s)	618
BcoDI	GTCTC	4 cut(s)	200, 290, 682, 684
BfaI	CTAG	4 cut(s)	56, 350, 716, 858
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	2 cut(s)	148, 902
BlsI	GCNGC	2 cut(s)	149, 903
Bme1390I	CCNGG	1 cut(s)	618
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	615, 798
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	3 cut(s)	423, 611, 639
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
BpuEI	CTTGAG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	707
BsaJI	CCNNGG	1 cut(s)	731
BsaWI	WCCGGW	2 cut(s)	821, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	3 cut(s)	113, 143, 176
Bse1I	ACTGG	2 cut(s)	268, 915
BseBI	CCWGG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	707
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	3 cut(s)	626, 654, 757
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	268, 915
BseRI	GAGGAG	1 cut(s)	96
BseSI	GKGCMC	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	913
BsgI	GTGCAG	1 cut(s)	998
BshFI	GGCC	2 cut(s)	531, 736
BshNI	GGYRCC	1 cut(s)	796
BshVI	ATCGAT	1 cut(s)	707
BsiHKAI	GWGCWC	2 cut(s)	407, 523
BsiSI	CCGG	7 cut(s)	114, 144, 177, 245, 737, 822, 876
BslFI	GGGAC	2 cut(s)	274, 980
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	4 cut(s)	200, 290, 682, 684
BsmBI	CGTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	274, 980
BsnI	GGCC	2 cut(s)	531, 736
Bsp1286I	GDGCHC	3 cut(s)	73, 407, 523
Bsp143I	GATC	3 cut(s)	579, 630, 922
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	531, 736
BspDI	ATCGAT	1 cut(s)	707
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	615, 798
BspPI	GGATC	1 cut(s)	917
BspT107I	GGYRCC	1 cut(s)	796
BsrFI	RCCGGY	3 cut(s)	113, 143, 176
BsrI	ACTGG	2 cut(s)	268, 915
BssAI	RCCGGY	3 cut(s)	113, 143, 176
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	3 cut(s)	579, 630, 922
BssT1I	CCWWGG	1 cut(s)	731
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	203, 214, 793
Bst6I	CTCTTC	4 cut(s)	363, 441, 565, 687
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	300
BstEII	GGTNACC	2 cut(s)	20, 878
BstF5I	GGATG	3 cut(s)	626, 654, 757
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	582, 633, 925
BstMAI	GTCTC	4 cut(s)	200, 290, 682, 684
BstMBI	GATC	3 cut(s)	579, 630, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	1 cut(s)	49
BstPI	GGTNACC	2 cut(s)	20, 878
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	913
Bsu15I	ATCGAT	1 cut(s)	707
BsuRI	GGCC	2 cut(s)	531, 736
BsuTUI	ATCGAT	1 cut(s)	707
BtsCI	GGATG	3 cut(s)	626, 654, 757
BtsIMutI	CAGTG	2 cut(s)	537, 589
Cac8I	GCNNGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	3 cut(s)	113, 143, 176
Cfr13I	GGNCC	1 cut(s)	52
ClaI	ATCGAT	1 cut(s)	707
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	82, 199
CspCI	CAANNNNNGTGG	2 cut(s)	774, 809
CviAII	CATG	6 cut(s)	46, 512, 833, 887, 933, 974
CviJI	RGCY	9 cut(s)	11, 71, 117, 162, 437, 531, 536, 736, 953
CviKI_1	RGCY	9 cut(s)	11, 71, 117, 162, 437, 531, 536, 736, 953
CviQI	GTAC	2 cut(s)	82, 199
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	581, 632, 924
DpnII	GATC	3 cut(s)	579, 630, 922
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
Eam1104I	CTCTTC	4 cut(s)	363, 441, 565, 687
EarI	CTCTTC	4 cut(s)	363, 441, 565, 687
Eco130I	CCWWGG	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	668
Eco91I	GGTNACC	2 cut(s)	20, 878
EcoO65I	GGTNACC	2 cut(s)	20, 878
EcoRII	CCWGG	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	731
EcoT38I	GRGCYC	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	731
Esp3I	CGTCTC	1 cut(s)	200
FaeI	CATG	6 cut(s)	49, 515, 836, 890, 936, 977
FaqI	GGGAC	2 cut(s)	274, 980
FatI	CATG	6 cut(s)	45, 511, 832, 886, 932, 973
Fnu4HI	GCNGC	2 cut(s)	148, 902
FokI	GGATG	3 cut(s)	633, 661, 764
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	148, 902
FspBI	CTAG	4 cut(s)	56, 350, 716, 858
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	148, 902
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	531, 736
HapII	CCGG	7 cut(s)	114, 144, 177, 245, 737, 822, 876
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	6 cut(s)	49, 515, 836, 890, 936, 977
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	871
HindII	GTYRAC	1 cut(s)	871
HinfI	GANTC	9 cut(s)	101, 128, 184, 224, 231, 467, 727, 968, 982
HpaI	GTTAAC	1 cut(s)	871
HpaII	CCGG	7 cut(s)	114, 144, 177, 245, 737, 822, 876
HphI	GGTGA	4 cut(s)	32, 65, 215, 233
Hpy166II	GTNNAC	3 cut(s)	521, 844, 871
Hpy188I	TCNGA	3 cut(s)	192, 687, 922
Hpy188III	TCNNGA	6 cut(s)	41, 228, 274, 418, 806, 833
Hpy8I	GTNNAC	3 cut(s)	521, 844, 871
Hpy99I	CGWCG	3 cut(s)	214, 256, 528
HpyAV	CCTTC	5 cut(s)	212, 353, 478, 893, 966
HpyCH4III	ACNGT	3 cut(s)	203, 214, 793
HpyCH4V	TGCA	3 cut(s)	521, 901, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	6 cut(s)	49, 515, 836, 890, 936, 977
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
KspAI	GTTAAC	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	579, 630, 922
LmnI	GCTCC	3 cut(s)	8, 402, 958
Lsp1109I	GCAGC	1 cut(s)	913
LweI	GCATC	3 cut(s)	423, 611, 639
MaeI	CTAG	4 cut(s)	56, 350, 716, 858
MaeIII	GTNAC	4 cut(s)	20, 478, 545, 878
MalI	GATC	3 cut(s)	581, 632, 924
MboI	GATC	3 cut(s)	579, 630, 922
MfeI	CAATTG	1 cut(s)	720
MhlI	GDGCHC	3 cut(s)	73, 407, 523
MluCI	AATT	7 cut(s)	34, 237, 268, 454, 488, 720, 994
MlyI	GAGTC	2 cut(s)	225, 962
MnlI	CCTC	7 cut(s)	11, 86, 95, 117, 521, 763, 787
MroNI	GCCGGC	1 cut(s)	113
MroXI	GAANNNNTTC	2 cut(s)	455, 813
MseI	TTAA	2 cut(s)	666, 870
MslI	CAYNNNNRTG	2 cut(s)	516, 931
MspI	CCGG	7 cut(s)	114, 144, 177, 245, 737, 822, 876
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	411
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	3 cut(s)	579, 630, 922
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	6 cut(s)	49, 515, 836, 890, 936, 977
NlaIV	GGNNCC	2 cut(s)	615, 798
NmuCI	GTSAC	3 cut(s)	20, 478, 545
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	832
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	248, 523
PdiI	GCCGGC	1 cut(s)	115
PdmI	GAANNNNTTC	2 cut(s)	455, 813
PfeI	GAWTC	7 cut(s)	101, 128, 184, 224, 467, 727, 982
PfoI	TCCNGGA	1 cut(s)	616
PkrI	GCNGC	2 cut(s)	149, 903
PleI	GAGTC	2 cut(s)	225, 962
PpsI	GAGTC	2 cut(s)	225, 962
PscI	ACATGT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	616
PspEI	GGTNACC	2 cut(s)	20, 878
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	615, 798
PspPI	GGNCC	1 cut(s)	52
RsaI	GTAC	2 cut(s)	83, 200
RsaNI	GTAC	2 cut(s)	82, 199
RseI	CAYNNNNRTG	2 cut(s)	516, 931
SaqAI	TTAA	2 cut(s)	666, 870
SatI	GCNGC	2 cut(s)	148, 902
Sau3AI	GATC	3 cut(s)	579, 630, 922
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	225, 962
ScrFI	CCNGG	1 cut(s)	618
SduI	GDGCHC	3 cut(s)	73, 407, 523
SfaNI	GCATC	3 cut(s)	423, 611, 639
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	516, 931
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	7 cut(s)	34, 237, 268, 454, 488, 720, 994
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	4 cut(s)	56, 350, 716, 858
StyD4I	CCNGG	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	3 cut(s)	203, 214, 793
TaqI	TCGA	5 cut(s)	170, 377, 696, 707, 959
TaqII	GACCGA	1 cut(s)	40
TasI	AATT	7 cut(s)	34, 237, 268, 454, 488, 720, 994
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	7 cut(s)	101, 128, 184, 224, 467, 727, 982
Tru1I	TTAA	2 cut(s)	666, 870
Tru9I	TTAA	2 cut(s)	666, 870
TscAI	CASTG	2 cut(s)	544, 589
TseFI	GTSAC	3 cut(s)	20, 478, 545
TseI	GCWGC	1 cut(s)	901
Tsp45I	GTSAC	3 cut(s)	20, 478, 545
TspDTI	ATGAA	9 cut(s)	17, 350, 440, 459, 500, 608, 672, 725, 875
TspGWI	ACGGA	2 cut(s)	295, 515
TspRI	CASTG	2 cut(s)	544, 589
VneI	GTGCAC	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	49
XmnI	GAANNNNTTC	2 cut(s)	455, 813
XspI	CTAG	4 cut(s)	56, 350, 716, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.