Rroxscaffold_7G00203210

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
51760892 .. 51764000
3109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203210.1

Sequence Viewer

Length: 1287 bp
ATGAACAGAGCGCTGCCGGAGATGTTGAACTGTATGAACGCGCCGGGAGGCCTCGTCGCCGGAAACTGTACGGACATGACGGTGCTGGACAGACAGAGGACTCGGATGAGGTGGCAGCACGACCAGTTCCAGCAGCAGCCGCAGCAGCAGCACCAAGGCTACTTTGGCGGGAACGAGCTCAATGGGGTGTTCAATCACGTGCCAATTGAGGCGAGCCAGGTTCAGAATTTCCAGGGGTTGATCGGGCTCGGCGGCGACTTGGGGATGGGGCAGGCGGTGAAACCCGACCTGAGTTCGGAAAATGGGTGGACCGAATTGGGTTATGGGTCTTGTGGGTTTGAGATGAATAATATTTCCAGGACTTTCAGCTGCCCGCCCAAAGTTGCCACCGAGACTGAGAGCAACAACGCCGTCGAGCCTGCCAAGATTAGCTCGCCGGCCGGCAAGGAAAGCTTTAAGAAGAGGAAAGCCGATAAGGCACAAAACAATAAGGCTGTAGCAGAAGATGATTCCTCGGACAAAAGAATGAAAGGGTGTGCAGAGGAGGGTGACTCCAAGATCACAGAACAAAATAGCACCAAGAACAACGACAGAGAATCTTCTGCTGATACTTCAAAAGAGAATTCAAAAGCTTCCGAGGTTCAAAAGCCGGATTACATTCATGTCCGGGCGCGCCGAGGTCAGGCCACTGATAGCCACAGCTTGGCTGAGAGAGTGAGGAGGGAAAAAATTAGTGAAAGAATGAAGTATCTGCAAGATTTAGTACCAGGGTGCAACAAGATCACCGGCAAGGCTGTTGAATTTCCTGGATATCTTTTATTCTTGTGTATTCTTAATTTTGATCCTCTTCTTAATCAACAGTTCCTGTCTATGAAACTAGCTGCTGTTAATCCGAGGCTTGAATTCAACATCGACGACTTGTTTACAAAAGAGATGTTTCCTGCAAACATGGCCAATTTTCCGACAATTGGAATGTCATCAGAAATGACTAGTTCTGCATATCTTCAGTTTAATCACATACAACAATTGCTTCAATGTTCGGGATTGGAGAGTGGGATAACTTCCCCTGATTCAACGCTGCTTCGAAGAAGCATCAGCACTCCTATATCAATCCCTGAAACATTTGTTGACACATCCTGCTTCACGCAAGTCCAACCTCCTACAACTTGGGATGCCGATATACAAAACCTTTTCAATGTGGAATTTCATCAAGGAAGAACAGCACAATTTCCGTCTCAACCATTTACAGGTTCCATTGAAGCTAGCAATTTAAAGATGGAGATGTGA

Protein Analysis

428

Amino Acids

47.57

Weight (kDa)

5.54

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 703
AccII CGCG 2 cut(s) 41, 673
AciI CCGC 5 cut(s) 140, 168, 252, 275, 374
AclWI GGATC 1 cut(s) 836
AcoI YGGCCR 2 cut(s) 438, 951
AcsI RAATTY 5 cut(s) 226, 622, 800, 902, 1202
AcuI CTGAAG 1 cut(s) 989
AcvI CACGTG 1 cut(s) 199
AfaI GTAC 2 cut(s) 70, 765
AfeI AGCGCT 1 cut(s) 12
AfiI CCNNNNNNNGG 5 cut(s) 295, 682, 703, 968, 1247
AhlI ACTAGT 1 cut(s) 989
AjnI CCWGG 5 cut(s) 216, 231, 356, 766, 805
AluBI AGCT 8 cut(s) 178, 369, 432, 453, 632, 702, 881, 1262
AluI AGCT 8 cut(s) 178, 369, 432, 453, 632, 702, 881, 1262
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 386, 1239
AlwI GGATC 1 cut(s) 836
AlwNI CAGNNNCTG 1 cut(s) 865
Aor51HI AGCGCT 1 cut(s) 12
AoxI GGCC 4 cut(s) 49, 438, 684, 951
ApoI RAATTY 5 cut(s) 226, 622, 800, 902, 1202
AscI GGCGCGCC 1 cut(s) 671
AspLEI GCGC 4 cut(s) 13, 43, 673, 675
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 2 cut(s) 45, 668
AsuHPI GGTGA 3 cut(s) 289, 560, 775
AsuII TTCGAA 1 cut(s) 1084
AsuNHI GCTAGC 1 cut(s) 1262
AvaII GGWCC 1 cut(s) 309
BalI TGGCCA 1 cut(s) 953
BanII GRGCYC 2 cut(s) 180, 249
BbrPI CACGTG 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 868, 1065
BccI CCATC 2 cut(s) 259, 1270
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 5 cut(s) 218, 233, 358, 768, 807
BcnI CCSGG 2 cut(s) 45, 668
BcoDI GTCTC 2 cut(s) 386, 1239
BcuI ACTAGT 1 cut(s) 989
BfaI CTAG 3 cut(s) 878, 990, 1263
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 476
Bme1390I CCNGG 7 cut(s) 45, 218, 233, 358, 668, 768, 807
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 1252
BmrFI CCNGG 7 cut(s) 45, 218, 233, 358, 668, 768, 807
BmsI GCATC 2 cut(s) 1101, 1162
BmtI GCTAGC 1 cut(s) 1266
BplI GAGNNNNNCTC 2 cut(s) 536, 568
Bpu14I TTCGAA 1 cut(s) 1084
BpuMI CCSGG 2 cut(s) 45, 668
BsaAI YACGTR 1 cut(s) 199
BsaJI CCNNGG 7 cut(s) 154, 232, 513, 636, 676, 767, 893
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 5 cut(s) 295, 682, 703, 968, 1247
Bse118I RCCGGY 3 cut(s) 436, 440, 785
Bse1I ACTGG 1 cut(s) 124
BseBI CCWGG 5 cut(s) 218, 233, 358, 768, 807
BseDI CCNNGG 7 cut(s) 154, 232, 513, 636, 676, 767, 893
BseGI GGATG 4 cut(s) 111, 270, 1133, 1177
BseLI CCNNNNNNNGG 5 cut(s) 295, 682, 703, 968, 1247
BseMII CTCAG 3 cut(s) 281, 387, 699
BseNI ACTGG 1 cut(s) 124
BsePI GCGCGC 1 cut(s) 671
BseRI GAGGAG 2 cut(s) 557, 733
BseX3I CGGCCG 1 cut(s) 438
BseXI GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 868, 1065
BsgI GTGCAG 1 cut(s) 558
Bsh1236I CGCG 2 cut(s) 41, 673
Bsh1285I CGRYCG 1 cut(s) 441
BshFI GGCC 4 cut(s) 51, 440, 686, 953
BsiEI CGRYCG 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 8 cut(s) 17, 44, 60, 437, 441, 650, 667, 786
BslI CCNNNNNNNGG 5 cut(s) 295, 682, 703, 968, 1247
BsmAI GTCTC 2 cut(s) 386, 1239
BsmBI CGTCTC 1 cut(s) 1239
BsnI GGCC 4 cut(s) 51, 440, 686, 953
Bsp119I TTCGAA 1 cut(s) 1084
Bsp1286I GDGCHC 2 cut(s) 180, 249
Bsp143I GATC 4 cut(s) 240, 558, 780, 841
BspACI CCGC 5 cut(s) 140, 168, 252, 275, 374
BspANI GGCC 4 cut(s) 51, 440, 686, 953
BspCNI CTCAG 3 cut(s) 282, 388, 700
BspFNI CGCG 2 cut(s) 41, 673
BspLI GGNNCC 1 cut(s) 1252
BspOI GCTAGC 1 cut(s) 1266
BspPI GGATC 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 1084
BsrFI RCCGGY 3 cut(s) 436, 440, 785
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 3 cut(s) 436, 440, 785
BssECI CCNNGG 7 cut(s) 154, 232, 513, 636, 676, 767, 893
BssHII GCGCGC 1 cut(s) 671
BssMI GATC 4 cut(s) 240, 558, 780, 841
BssT1I CCWWGG 1 cut(s) 154
Bst2UI CCWGG 5 cut(s) 218, 233, 358, 768, 807
Bst4CI ACNGT 4 cut(s) 32, 68, 82, 861
Bst6I CTCTTC 2 cut(s) 455, 852
BstBAI YACGTR 1 cut(s) 199
BstBI TTCGAA 1 cut(s) 1084
BstC8I GCNNGC 9 cut(s) 214, 273, 374, 420, 434, 438, 442, 673, 1264
BstDEI CTNAG 3 cut(s) 290, 396, 708
BstF5I GGATG 4 cut(s) 111, 270, 1133, 1177
BstFNI CGCG 2 cut(s) 41, 673
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 4 cut(s) 13, 43, 673, 675
BstKTI GATC 4 cut(s) 243, 561, 783, 844
BstMAI GTCTC 2 cut(s) 386, 1239
BstMBI GATC 4 cut(s) 240, 558, 780, 841
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 165, 450, 476, 950
BstNI CCWGG 5 cut(s) 218, 233, 358, 768, 807
BstSCI CCNGG 7 cut(s) 43, 216, 231, 356, 666, 766, 805
BstSFI CTRYAG 1 cut(s) 495
BstUI CGCG 2 cut(s) 41, 673
BstV1I GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 868, 1065
BstZI CGGCCG 1 cut(s) 438
BsuRI GGCC 4 cut(s) 51, 440, 686, 953
BtsCI GGATG 4 cut(s) 111, 270, 1133, 1177
BtsIMutI CAGTG 1 cut(s) 687
Cac8I GCNNGC 9 cut(s) 214, 273, 374, 420, 434, 438, 442, 673, 1264
CaiI CAGNNNCTG 1 cut(s) 865
CfoI GCGC 4 cut(s) 13, 43, 673, 675
Cfr10I RCCGGY 3 cut(s) 436, 440, 785
Cfr13I GGNCC 1 cut(s) 309
Csp6I GTAC 2 cut(s) 69, 764
CviAII CATG 3 cut(s) 76, 662, 949
CviQI GTAC 2 cut(s) 69, 764
DdeI CTNAG 3 cut(s) 290, 396, 708
DpnI GATC 4 cut(s) 242, 560, 782, 843
DpnII GATC 4 cut(s) 240, 558, 780, 841
DraI TTTAAA 1 cut(s) 1272
EaeI YGGCCR 2 cut(s) 438, 951
EagI CGGCCG 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 455, 852
EarI CTCTTC 2 cut(s) 455, 852
Ecl136II GAGCTC 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 51
Eco24I GRGCYC 2 cut(s) 180, 249
Eco32I GATATC 1 cut(s) 812
Eco47I GGWCC 1 cut(s) 309
Eco47III AGCGCT 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 438
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 989
Eco72I CACGTG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 178
EcoRI GAATTC 2 cut(s) 622, 902
EcoRII CCWGG 5 cut(s) 216, 231, 356, 766, 805
EcoRV GATATC 1 cut(s) 812
EcoT14I CCWWGG 1 cut(s) 154
EcoT38I GRGCYC 2 cut(s) 180, 249
ErhI CCWWGG 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 1239
FaeI CATG 3 cut(s) 79, 665, 952
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 3 cut(s) 75, 661, 948
FauI CCCGC 2 cut(s) 161, 381
FokI GGATG 4 cut(s) 118, 277, 1120, 1184
FriOI GRGCYC 2 cut(s) 180, 249
FspBI CTAG 3 cut(s) 878, 990, 1263
GlaI GCGC 4 cut(s) 12, 42, 672, 674
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 4 cut(s) 51, 440, 686, 953
HapII CCGG 8 cut(s) 17, 44, 60, 437, 441, 650, 667, 786
HhaI GCGC 4 cut(s) 13, 43, 673, 675
Hin1II CATG 3 cut(s) 79, 665, 952
Hin6I GCGC 4 cut(s) 11, 41, 671, 673
HinP1I GCGC 4 cut(s) 11, 41, 671, 673
HincII GTYRAC 1 cut(s) 1129
HindII GTYRAC 1 cut(s) 1129
HindIII AAGCTT 2 cut(s) 451, 630
HinfI GANTC 5 cut(s) 100, 509, 551, 596, 1070
HpaII CCGG 8 cut(s) 17, 44, 60, 437, 441, 650, 667, 786
HphI GGTGA 3 cut(s) 289, 560, 775
Hpy166II GTNNAC 3 cut(s) 309, 924, 1129
Hpy188I TCNGA 8 cut(s) 105, 225, 298, 517, 637, 894, 963, 982
Hpy188III TCNNGA 1 cut(s) 1041
Hpy8I GTNNAC 3 cut(s) 309, 924, 1129
Hpy99I CGWCG 3 cut(s) 59, 416, 917
HpyCH4III ACNGT 4 cut(s) 32, 68, 82, 861
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 539, 754, 774, 944, 998
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 165, 450, 476, 950
HpyF3I CTNAG 3 cut(s) 290, 396, 708
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 3 cut(s) 79, 665, 952
HspAI GCGC 4 cut(s) 11, 41, 671, 673
KroI GCCGGC 2 cut(s) 436, 440
KroNI GCCGGC 2 cut(s) 438, 442
Kzo9I GATC 4 cut(s) 240, 558, 780, 841
Lsp1109I GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 356, 868, 1065
LweI GCATC 2 cut(s) 1101, 1162
MaeI CTAG 3 cut(s) 878, 990, 1263
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 548
MalI GATC 4 cut(s) 242, 560, 782, 843
MboI GATC 4 cut(s) 240, 558, 780, 841
MboII GAAGA 7 cut(s) 472, 515, 591, 839, 995, 1098, 1227
MfeI CAATTG 3 cut(s) 204, 966, 1025
MhlI GDGCHC 2 cut(s) 180, 249
MlsI TGGCCA 1 cut(s) 953
MluNI TGGCCA 1 cut(s) 953
MlyI GAGTC 2 cut(s) 94, 545
MmeI TCCRAC 2 cut(s) 986, 1177
Mox20I TGGCCA 1 cut(s) 953
MroNI GCCGGC 2 cut(s) 436, 440
MscI TGGCCA 1 cut(s) 953
MseI TTAA 6 cut(s) 456, 834, 852, 888, 1011, 1271
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 8 cut(s) 17, 44, 60, 437, 441, 650, 667, 786
MspR9I CCNGG 7 cut(s) 45, 218, 233, 358, 668, 768, 807
MunI CAATTG 3 cut(s) 204, 966, 1025
MvaI CCWGG 5 cut(s) 218, 233, 358, 768, 807
MvnI CGCG 2 cut(s) 41, 673
MwoI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 165, 450, 476, 950
NaeI GCCGGC 2 cut(s) 438, 442
NciI CCSGG 2 cut(s) 45, 668
NdeII GATC 4 cut(s) 240, 558, 780, 841
NgoMIV GCCGGC 2 cut(s) 436, 440
NheI GCTAGC 1 cut(s) 1262
NlaIII CATG 3 cut(s) 79, 665, 952
NlaIV GGNNCC 1 cut(s) 1252
NmeAIII GCCGAG 2 cut(s) 228, 701
NmuCI GTSAC 1 cut(s) 548
NspV TTCGAA 1 cut(s) 1084
PalAI GGCGCGCC 1 cut(s) 671
PauI GCGCGC 1 cut(s) 671
PceI AGGCCT 1 cut(s) 51
PdiI GCCGGC 2 cut(s) 438, 442
PfeI GAWTC 3 cut(s) 509, 596, 1070
PflMI CCANNNNNTGG 1 cut(s) 703
PfoI TCCNGGA 2 cut(s) 356, 805
PleI GAGTC 2 cut(s) 94, 545
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
PpsI GAGTC 2 cut(s) 94, 545
Ppu21I YACGTR 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 5 cut(s) 216, 231, 356, 766, 805
PspCI CACGTG 1 cut(s) 199
PspGI CCWGG 5 cut(s) 216, 231, 356, 766, 805
PspN4I GGNNCC 1 cut(s) 1252
PspPI GGNCC 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 865
PteI GCGCGC 1 cut(s) 671
PvuII CAGCTG 1 cut(s) 369
RsaI GTAC 2 cut(s) 70, 765
RsaNI GTAC 2 cut(s) 69, 764
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 6 cut(s) 456, 834, 852, 888, 1011, 1271
Sau3AI GATC 4 cut(s) 240, 558, 780, 841
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 2 cut(s) 94, 545
ScrFI CCNGG 7 cut(s) 45, 218, 233, 358, 668, 768, 807
SduI GDGCHC 2 cut(s) 180, 249
SfaNI GCATC 2 cut(s) 1101, 1162
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 1084
SgsI GGCGCGCC 1 cut(s) 671
SinI GGWCC 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 80
SpeI ACTAGT 1 cut(s) 989
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 5 cut(s) 140, 168, 252, 275, 374
SspI AATATT 1 cut(s) 352
SspMI CTAG 3 cut(s) 878, 990, 1263
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 7 cut(s) 43, 216, 231, 356, 666, 766, 805
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 4 cut(s) 32, 68, 82, 861
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 414, 912, 1084
TaqII GACCGA 1 cut(s) 326
TauI GCSGC 2 cut(s) 142, 255
TfiI GAWTC 3 cut(s) 509, 596, 1070
Tru1I TTAA 6 cut(s) 456, 834, 852, 888, 1011, 1271
Tru9I TTAA 6 cut(s) 456, 834, 852, 888, 1011, 1271
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 8 cut(s) 17, 50, 359, 542, 650, 758, 887, 1196
TspGWI ACGGA 2 cut(s) 86, 1221
TspRI CASTG 1 cut(s) 694
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 5 cut(s) 226, 622, 800, 902, 1202
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 3 cut(s) 878, 990, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.