Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34530 |
| fragaria_vesca | FvH4_2g09030 FvH4_2g09030 |
| malus_domestica | MD05G1065100.v1.1 MD10G1074000.v1.1 |
| prunus_persica | Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 |
| pyrus_communis | pycom05g05640 pycom10g05820 |
| rosa_chinensis | RchiOBHm_Chr6g0264701 |
| rosa_laevigata | RLG00000014234 |
| rosa_multiflora | Rmu_sc0000546.1_g000026 |
| rosa_roxburghii | Rroxscaffold_175G00432010 Rroxscaffold_7G00203210 |
| rosa_rugosa | Rorug06G0014800 |
| rosa_samantha | Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600 |
| rosa_wichuraiana | Rw6G011640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 703 |
| AccII | CGCG | 2 cut(s) | 41, 673 |
| AciI | CCGC | 5 cut(s) | 140, 168, 252, 275, 374 |
| AclWI | GGATC | 1 cut(s) | 836 |
| AcoI | YGGCCR | 2 cut(s) | 438, 951 |
| AcsI | RAATTY | 5 cut(s) | 226, 622, 800, 902, 1202 |
| AcuI | CTGAAG | 1 cut(s) | 989 |
| AcvI | CACGTG | 1 cut(s) | 199 |
| AfaI | GTAC | 2 cut(s) | 70, 765 |
| AfeI | AGCGCT | 1 cut(s) | 12 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 295, 682, 703, 968, 1247 |
| AhlI | ACTAGT | 1 cut(s) | 989 |
| AjnI | CCWGG | 5 cut(s) | 216, 231, 356, 766, 805 |
| AluBI | AGCT | 8 cut(s) | 178, 369, 432, 453, 632, 702, 881, 1262 |
| AluI | AGCT | 8 cut(s) | 178, 369, 432, 453, 632, 702, 881, 1262 |
| Alw21I | GWGCWC | 1 cut(s) | 180 |
| Alw26I | GTCTC | 2 cut(s) | 386, 1239 |
| AlwI | GGATC | 1 cut(s) | 836 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 865 |
| Aor51HI | AGCGCT | 1 cut(s) | 12 |
| AoxI | GGCC | 4 cut(s) | 49, 438, 684, 951 |
| ApoI | RAATTY | 5 cut(s) | 226, 622, 800, 902, 1202 |
| AscI | GGCGCGCC | 1 cut(s) | 671 |
| AspLEI | GCGC | 4 cut(s) | 13, 43, 673, 675 |
| AspS9I | GGNCC | 1 cut(s) | 309 |
| AsuC2I | CCSGG | 2 cut(s) | 45, 668 |
| AsuHPI | GGTGA | 3 cut(s) | 289, 560, 775 |
| AsuII | TTCGAA | 1 cut(s) | 1084 |
| AsuNHI | GCTAGC | 1 cut(s) | 1262 |
| AvaII | GGWCC | 1 cut(s) | 309 |
| BalI | TGGCCA | 1 cut(s) | 953 |
| BanII | GRGCYC | 2 cut(s) | 180, 249 |
| BbrPI | CACGTG | 1 cut(s) | 199 |
| Bbv12I | GWGCWC | 1 cut(s) | 180 |
| BbvI | GCAGC | 9 cut(s) | 127, 145, 148, 154, 157, 160, 356, 868, 1065 |
| BccI | CCATC | 2 cut(s) | 259, 1270 |
| BceAI | ACGGC | 1 cut(s) | 395 |
| BciT130I | CCWGG | 5 cut(s) | 218, 233, 358, 768, 807 |
| BcnI | CCSGG | 2 cut(s) | 45, 668 |
| BcoDI | GTCTC | 2 cut(s) | 386, 1239 |
| BcuI | ACTAGT | 1 cut(s) | 989 |
| BfaI | CTAG | 3 cut(s) | 878, 990, 1263 |
| BfmI | CTRYAG | 1 cut(s) | 495 |
| BfoI | RGCGCY | 1 cut(s) | 14 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 476 |
| Bme1390I | CCNGG | 7 cut(s) | 45, 218, 233, 358, 668, 768, 807 |
| Bme18I | GGWCC | 1 cut(s) | 309 |
| BmgT120I | GGNCC | 1 cut(s) | 309 |
| BmiI | GGNNCC | 1 cut(s) | 1252 |
| BmrFI | CCNGG | 7 cut(s) | 45, 218, 233, 358, 668, 768, 807 |
| BmsI | GCATC | 2 cut(s) | 1101, 1162 |
| BmtI | GCTAGC | 1 cut(s) | 1266 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 536, 568 |
| Bpu14I | TTCGAA | 1 cut(s) | 1084 |
| BpuMI | CCSGG | 2 cut(s) | 45, 668 |
| BsaAI | YACGTR | 1 cut(s) | 199 |
| BsaJI | CCNNGG | 7 cut(s) | 154, 232, 513, 636, 676, 767, 893 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 39, 69 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 295, 682, 703, 968, 1247 |
| Bse118I | RCCGGY | 3 cut(s) | 436, 440, 785 |
| Bse1I | ACTGG | 1 cut(s) | 124 |
| BseBI | CCWGG | 5 cut(s) | 218, 233, 358, 768, 807 |
| BseDI | CCNNGG | 7 cut(s) | 154, 232, 513, 636, 676, 767, 893 |
| BseGI | GGATG | 4 cut(s) | 111, 270, 1133, 1177 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 295, 682, 703, 968, 1247 |
| BseMII | CTCAG | 3 cut(s) | 281, 387, 699 |
| BseNI | ACTGG | 1 cut(s) | 124 |
| BsePI | GCGCGC | 1 cut(s) | 671 |
| BseRI | GAGGAG | 2 cut(s) | 557, 733 |
| BseX3I | CGGCCG | 1 cut(s) | 438 |
| BseXI | GCAGC | 9 cut(s) | 127, 145, 148, 154, 157, 160, 356, 868, 1065 |
| BsgI | GTGCAG | 1 cut(s) | 558 |
| Bsh1236I | CGCG | 2 cut(s) | 41, 673 |
| Bsh1285I | CGRYCG | 1 cut(s) | 441 |
| BshFI | GGCC | 4 cut(s) | 51, 440, 686, 953 |
| BsiEI | CGRYCG | 1 cut(s) | 441 |
| BsiHKAI | GWGCWC | 1 cut(s) | 180 |
| BsiSI | CCGG | 8 cut(s) | 17, 44, 60, 437, 441, 650, 667, 786 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 295, 682, 703, 968, 1247 |
| BsmAI | GTCTC | 2 cut(s) | 386, 1239 |
| BsmBI | CGTCTC | 1 cut(s) | 1239 |
| BsnI | GGCC | 4 cut(s) | 51, 440, 686, 953 |
| Bsp119I | TTCGAA | 1 cut(s) | 1084 |
| Bsp1286I | GDGCHC | 2 cut(s) | 180, 249 |
| Bsp143I | GATC | 4 cut(s) | 240, 558, 780, 841 |
| BspACI | CCGC | 5 cut(s) | 140, 168, 252, 275, 374 |
| BspANI | GGCC | 4 cut(s) | 51, 440, 686, 953 |
| BspCNI | CTCAG | 3 cut(s) | 282, 388, 700 |
| BspFNI | CGCG | 2 cut(s) | 41, 673 |
| BspLI | GGNNCC | 1 cut(s) | 1252 |
| BspOI | GCTAGC | 1 cut(s) | 1266 |
| BspPI | GGATC | 1 cut(s) | 836 |
| BspT104I | TTCGAA | 1 cut(s) | 1084 |
| BsrFI | RCCGGY | 3 cut(s) | 436, 440, 785 |
| BsrI | ACTGG | 1 cut(s) | 124 |
| BssAI | RCCGGY | 3 cut(s) | 436, 440, 785 |
| BssECI | CCNNGG | 7 cut(s) | 154, 232, 513, 636, 676, 767, 893 |
| BssHII | GCGCGC | 1 cut(s) | 671 |
| BssMI | GATC | 4 cut(s) | 240, 558, 780, 841 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst2UI | CCWGG | 5 cut(s) | 218, 233, 358, 768, 807 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 68, 82, 861 |
| Bst6I | CTCTTC | 2 cut(s) | 455, 852 |
| BstBAI | YACGTR | 1 cut(s) | 199 |
| BstBI | TTCGAA | 1 cut(s) | 1084 |
| BstC8I | GCNNGC | 9 cut(s) | 214, 273, 374, 420, 434, 438, 442, 673, 1264 |
| BstDEI | CTNAG | 3 cut(s) | 290, 396, 708 |
| BstF5I | GGATG | 4 cut(s) | 111, 270, 1133, 1177 |
| BstFNI | CGCG | 2 cut(s) | 41, 673 |
| BstH2I | RGCGCY | 1 cut(s) | 14 |
| BstHHI | GCGC | 4 cut(s) | 13, 43, 673, 675 |
| BstKTI | GATC | 4 cut(s) | 243, 561, 783, 844 |
| BstMAI | GTCTC | 2 cut(s) | 386, 1239 |
| BstMBI | GATC | 4 cut(s) | 240, 558, 780, 841 |
| BstMCI | CGRYCG | 1 cut(s) | 441 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 139, 142, 145, 148, 165, 450, 476, 950 |
| BstNI | CCWGG | 5 cut(s) | 218, 233, 358, 768, 807 |
| BstSCI | CCNGG | 7 cut(s) | 43, 216, 231, 356, 666, 766, 805 |
| BstSFI | CTRYAG | 1 cut(s) | 495 |
| BstUI | CGCG | 2 cut(s) | 41, 673 |
| BstV1I | GCAGC | 9 cut(s) | 127, 145, 148, 154, 157, 160, 356, 868, 1065 |
| BstZI | CGGCCG | 1 cut(s) | 438 |
| BsuRI | GGCC | 4 cut(s) | 51, 440, 686, 953 |
| BtsCI | GGATG | 4 cut(s) | 111, 270, 1133, 1177 |
| BtsIMutI | CAGTG | 1 cut(s) | 687 |
| Cac8I | GCNNGC | 9 cut(s) | 214, 273, 374, 420, 434, 438, 442, 673, 1264 |
| CaiI | CAGNNNCTG | 1 cut(s) | 865 |
| CfoI | GCGC | 4 cut(s) | 13, 43, 673, 675 |
| Cfr10I | RCCGGY | 3 cut(s) | 436, 440, 785 |
| Cfr13I | GGNCC | 1 cut(s) | 309 |
| Csp6I | GTAC | 2 cut(s) | 69, 764 |
| CviAII | CATG | 3 cut(s) | 76, 662, 949 |
| CviQI | GTAC | 2 cut(s) | 69, 764 |
| DdeI | CTNAG | 3 cut(s) | 290, 396, 708 |
| DpnI | GATC | 4 cut(s) | 242, 560, 782, 843 |
| DpnII | GATC | 4 cut(s) | 240, 558, 780, 841 |
| DraI | TTTAAA | 1 cut(s) | 1272 |
| EaeI | YGGCCR | 2 cut(s) | 438, 951 |
| EagI | CGGCCG | 1 cut(s) | 438 |
| Eam1104I | CTCTTC | 2 cut(s) | 455, 852 |
| EarI | CTCTTC | 2 cut(s) | 455, 852 |
| Ecl136II | GAGCTC | 1 cut(s) | 178 |
| EclXI | CGGCCG | 1 cut(s) | 438 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco147I | AGGCCT | 1 cut(s) | 51 |
| Eco24I | GRGCYC | 2 cut(s) | 180, 249 |
| Eco32I | GATATC | 1 cut(s) | 812 |
| Eco47I | GGWCC | 1 cut(s) | 309 |
| Eco47III | AGCGCT | 1 cut(s) | 12 |
| Eco52I | CGGCCG | 1 cut(s) | 438 |
| Eco53kI | GAGCTC | 1 cut(s) | 178 |
| Eco57I | CTGAAG | 1 cut(s) | 989 |
| Eco72I | CACGTG | 1 cut(s) | 199 |
| EcoICRI | GAGCTC | 1 cut(s) | 178 |
| EcoRI | GAATTC | 2 cut(s) | 622, 902 |
| EcoRII | CCWGG | 5 cut(s) | 216, 231, 356, 766, 805 |
| EcoRV | GATATC | 1 cut(s) | 812 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| EcoT38I | GRGCYC | 2 cut(s) | 180, 249 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| Esp3I | CGTCTC | 1 cut(s) | 1239 |
| FaeI | CATG | 3 cut(s) | 79, 665, 952 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 437, 469 |
| FatI | CATG | 3 cut(s) | 75, 661, 948 |
| FauI | CCCGC | 2 cut(s) | 161, 381 |
| FokI | GGATG | 4 cut(s) | 118, 277, 1120, 1184 |
| FriOI | GRGCYC | 2 cut(s) | 180, 249 |
| FspBI | CTAG | 3 cut(s) | 878, 990, 1263 |
| GlaI | GCGC | 4 cut(s) | 12, 42, 672, 674 |
| HaeII | RGCGCY | 1 cut(s) | 14 |
| HaeIII | GGCC | 4 cut(s) | 51, 440, 686, 953 |
| HapII | CCGG | 8 cut(s) | 17, 44, 60, 437, 441, 650, 667, 786 |
| HhaI | GCGC | 4 cut(s) | 13, 43, 673, 675 |
| Hin1II | CATG | 3 cut(s) | 79, 665, 952 |
| Hin6I | GCGC | 4 cut(s) | 11, 41, 671, 673 |
| HinP1I | GCGC | 4 cut(s) | 11, 41, 671, 673 |
| HincII | GTYRAC | 1 cut(s) | 1129 |
| HindII | GTYRAC | 1 cut(s) | 1129 |
| HindIII | AAGCTT | 2 cut(s) | 451, 630 |
| HinfI | GANTC | 5 cut(s) | 100, 509, 551, 596, 1070 |
| HpaII | CCGG | 8 cut(s) | 17, 44, 60, 437, 441, 650, 667, 786 |
| HphI | GGTGA | 3 cut(s) | 289, 560, 775 |
| Hpy166II | GTNNAC | 3 cut(s) | 309, 924, 1129 |
| Hpy188I | TCNGA | 8 cut(s) | 105, 225, 298, 517, 637, 894, 963, 982 |
| Hpy188III | TCNNGA | 1 cut(s) | 1041 |
| Hpy8I | GTNNAC | 3 cut(s) | 309, 924, 1129 |
| Hpy99I | CGWCG | 3 cut(s) | 59, 416, 917 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 68, 82, 861 |
| HpyCH4IV | ACGT | 1 cut(s) | 198 |
| HpyCH4V | TGCA | 5 cut(s) | 539, 754, 774, 944, 998 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 139, 142, 145, 148, 165, 450, 476, 950 |
| HpyF3I | CTNAG | 3 cut(s) | 290, 396, 708 |
| HpySE526I | ACGT | 1 cut(s) | 198 |
| Hsp92II | CATG | 3 cut(s) | 79, 665, 952 |
| HspAI | GCGC | 4 cut(s) | 11, 41, 671, 673 |
| KroI | GCCGGC | 2 cut(s) | 436, 440 |
| KroNI | GCCGGC | 2 cut(s) | 438, 442 |
| Kzo9I | GATC | 4 cut(s) | 240, 558, 780, 841 |
| Lsp1109I | GCAGC | 9 cut(s) | 127, 145, 148, 154, 157, 160, 356, 868, 1065 |
| LweI | GCATC | 2 cut(s) | 1101, 1162 |
| MaeI | CTAG | 3 cut(s) | 878, 990, 1263 |
| MaeII | ACGT | 1 cut(s) | 198 |
| MaeIII | GTNAC | 1 cut(s) | 548 |
| MalI | GATC | 4 cut(s) | 242, 560, 782, 843 |
| MboI | GATC | 4 cut(s) | 240, 558, 780, 841 |
| MboII | GAAGA | 7 cut(s) | 472, 515, 591, 839, 995, 1098, 1227 |
| MfeI | CAATTG | 3 cut(s) | 204, 966, 1025 |
| MhlI | GDGCHC | 2 cut(s) | 180, 249 |
| MlsI | TGGCCA | 1 cut(s) | 953 |
| MluNI | TGGCCA | 1 cut(s) | 953 |
| MlyI | GAGTC | 2 cut(s) | 94, 545 |
| MmeI | TCCRAC | 2 cut(s) | 986, 1177 |
| Mox20I | TGGCCA | 1 cut(s) | 953 |
| MroNI | GCCGGC | 2 cut(s) | 436, 440 |
| MscI | TGGCCA | 1 cut(s) | 953 |
| MseI | TTAA | 6 cut(s) | 456, 834, 852, 888, 1011, 1271 |
| MslI | CAYNNNNRTG | 1 cut(s) | 80 |
| Msp20I | TGGCCA | 1 cut(s) | 953 |
| MspA1I | CMGCKG | 1 cut(s) | 369 |
| MspI | CCGG | 8 cut(s) | 17, 44, 60, 437, 441, 650, 667, 786 |
| MspR9I | CCNGG | 7 cut(s) | 45, 218, 233, 358, 668, 768, 807 |
| MunI | CAATTG | 3 cut(s) | 204, 966, 1025 |
| MvaI | CCWGG | 5 cut(s) | 218, 233, 358, 768, 807 |
| MvnI | CGCG | 2 cut(s) | 41, 673 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 139, 142, 145, 148, 165, 450, 476, 950 |
| NaeI | GCCGGC | 2 cut(s) | 438, 442 |
| NciI | CCSGG | 2 cut(s) | 45, 668 |
| NdeII | GATC | 4 cut(s) | 240, 558, 780, 841 |
| NgoMIV | GCCGGC | 2 cut(s) | 436, 440 |
| NheI | GCTAGC | 1 cut(s) | 1262 |
| NlaIII | CATG | 3 cut(s) | 79, 665, 952 |
| NlaIV | GGNNCC | 1 cut(s) | 1252 |
| NmeAIII | GCCGAG | 2 cut(s) | 228, 701 |
| NmuCI | GTSAC | 1 cut(s) | 548 |
| NspV | TTCGAA | 1 cut(s) | 1084 |
| PalAI | GGCGCGCC | 1 cut(s) | 671 |
| PauI | GCGCGC | 1 cut(s) | 671 |
| PceI | AGGCCT | 1 cut(s) | 51 |
| PdiI | GCCGGC | 2 cut(s) | 438, 442 |
| PfeI | GAWTC | 3 cut(s) | 509, 596, 1070 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 703 |
| PfoI | TCCNGGA | 2 cut(s) | 356, 805 |
| PleI | GAGTC | 2 cut(s) | 94, 545 |
| PmaCI | CACGTG | 1 cut(s) | 199 |
| PmlI | CACGTG | 1 cut(s) | 199 |
| PpsI | GAGTC | 2 cut(s) | 94, 545 |
| Ppu21I | YACGTR | 1 cut(s) | 199 |
| Psp124BI | GAGCTC | 1 cut(s) | 180 |
| Psp6I | CCWGG | 5 cut(s) | 216, 231, 356, 766, 805 |
| PspCI | CACGTG | 1 cut(s) | 199 |
| PspGI | CCWGG | 5 cut(s) | 216, 231, 356, 766, 805 |
| PspN4I | GGNNCC | 1 cut(s) | 1252 |
| PspPI | GGNCC | 1 cut(s) | 309 |
| PstNI | CAGNNNCTG | 1 cut(s) | 865 |
| PteI | GCGCGC | 1 cut(s) | 671 |
| PvuII | CAGCTG | 1 cut(s) | 369 |
| RsaI | GTAC | 2 cut(s) | 70, 765 |
| RsaNI | GTAC | 2 cut(s) | 69, 764 |
| RseI | CAYNNNNRTG | 1 cut(s) | 80 |
| SacI | GAGCTC | 1 cut(s) | 180 |
| SaqAI | TTAA | 6 cut(s) | 456, 834, 852, 888, 1011, 1271 |
| Sau3AI | GATC | 4 cut(s) | 240, 558, 780, 841 |
| Sau96I | GGNCC | 1 cut(s) | 309 |
| SchI | GAGTC | 2 cut(s) | 94, 545 |
| ScrFI | CCNGG | 7 cut(s) | 45, 218, 233, 358, 668, 768, 807 |
| SduI | GDGCHC | 2 cut(s) | 180, 249 |
| SfaNI | GCATC | 2 cut(s) | 1101, 1162 |
| SfcI | CTRYAG | 1 cut(s) | 495 |
| SfuI | TTCGAA | 1 cut(s) | 1084 |
| SgsI | GGCGCGCC | 1 cut(s) | 671 |
| SinI | GGWCC | 1 cut(s) | 309 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 80 |
| SpeI | ACTAGT | 1 cut(s) | 989 |
| SseBI | AGGCCT | 1 cut(s) | 51 |
| SsiI | CCGC | 5 cut(s) | 140, 168, 252, 275, 374 |
| SspI | AATATT | 1 cut(s) | 352 |
| SspMI | CTAG | 3 cut(s) | 878, 990, 1263 |
| SstI | GAGCTC | 1 cut(s) | 180 |
| StuI | AGGCCT | 1 cut(s) | 51 |
| StyD4I | CCNGG | 7 cut(s) | 43, 216, 231, 356, 666, 766, 805 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 4 cut(s) | 32, 68, 82, 861 |
| TaiI | ACGT | 1 cut(s) | 201 |
| TaqI | TCGA | 3 cut(s) | 414, 912, 1084 |
| TaqII | GACCGA | 1 cut(s) | 326 |
| TauI | GCSGC | 2 cut(s) | 142, 255 |
| TfiI | GAWTC | 3 cut(s) | 509, 596, 1070 |
| Tru1I | TTAA | 6 cut(s) | 456, 834, 852, 888, 1011, 1271 |
| Tru9I | TTAA | 6 cut(s) | 456, 834, 852, 888, 1011, 1271 |
| TscAI | CASTG | 1 cut(s) | 694 |
| TseFI | GTSAC | 1 cut(s) | 548 |
| Tsp45I | GTSAC | 1 cut(s) | 548 |
| TspDTI | ATGAA | 8 cut(s) | 17, 50, 359, 542, 650, 758, 887, 1196 |
| TspGWI | ACGGA | 2 cut(s) | 86, 1221 |
| TspRI | CASTG | 1 cut(s) | 694 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 703 |
| VpaK11BI | GGWCC | 1 cut(s) | 309 |
| XapI | RAATTY | 5 cut(s) | 226, 622, 800, 902, 1202 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 161 |
| XspI | CTAG | 3 cut(s) | 878, 990, 1263 |