Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008070

Physical Location & Seq

Genomic Coordinates Forward (+)

15785124 .. 15788538

Gene Structure 3415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG130600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAACAGAGCCCTGCCGGAGATGTTGAACTGTATGAACGCGCCGGGAGGCCTCGTCGCCGGAAACTGTACGGACATGACGGTGCTGGACAGACAGAGGACTCGGATGAGGTGGCAGCACGACCAGTTCCAGCAGCAGCCGCAGCAGCAGCAGCAGCACCAAGGCTACTTTGGCGGGAACGAGCTCAATGGGGTGTTCAATCACGTGCCAATTGAGGCGAGCCAGGTTCAGAATTTCCAGGGGTTGATCGGGCTCGGCGGCGACTTGGGGATGGGGCAGGCGGTGAAACCCGACCTGAGTTCGGAAAATGGGTGGACCGAATTGGGTTATGGGTCTTGTGGGTTTGAGATGAATAATATTTCCAGGACTTTCAGCTGCCCGCCCAAAGTTGCCGCCGAGACTGAGAGCAACAACGCCGTCCCGCCTGCCAAGATTAGCTCGCCGGCCGGCAAGGAAAGCTTTAAGAAGAGGAAAGCCGATAAGGCACAAAACAATAAGGCTGTAGCAGAAGATGATTCCTCGGACAAAAGAATGAAGGGGTGTGCAGAGGAGGGTGACTCCAAGATCACAGAACAAAATAGCACCAAGAACAACGACAGAGAATCTTCTGCTGATACTTCAAAAGAGAATTCAAAAGCTTCCGAGGTTCAAAAGCCGGATTACATTCATGTCCGGGCGCGCCGAGGTCAGGCCACTGATAGCCACAGCTTGGCTGAGAGAGTGAGGAGGGAAAAAATTAGTGAAAGAATGAAGTATCTGCAAGATTTAGTACCAGGGTGCAACAAGATCACTGGCAAGGCTGGTATGCTAGACGAAATCATCAATTATGTTCAATCCCTTCAACGACAAGTAGAGTTCCTATCTATGAAACTAGCTGCTGTTAATCCGAGGCTTGATTTCAACATCGACGACTTGTTTACAAAAGAGGTAAGGAGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

313

Amino Acids

34.86

Weight (kDa)

7.6

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	234 - 281	3.4e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34530
fragaria_vesca	FvH4_2g09030 FvH4_2g09030
malus_domestica	MD05G1065100.v1.1 MD10G1074000.v1.1
prunus_persica	Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1
pyrus_communis	pycom05g05640 pycom10g05820
rosa_chinensis	RchiOBHm_Chr6g0264701
rosa_laevigata	RLG00000014234
rosa_multiflora	Rmu_sc0000546.1_g000026
rosa_roxburghii	Rroxscaffold_175G00432010 Rroxscaffold_7G00203210
rosa_rugosa	Rorug06G0014800
rosa_samantha	Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600
rosa_wichuraiana	Rw6G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccII	CGCG	2 cut(s)	41, 679
AciI	CCGC	7 cut(s)	140, 174, 258, 281, 380, 393, 422
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	232, 628
AcvI	CACGTG	1 cut(s)	205
AfaI	GTAC	2 cut(s)	70, 771
AfiI	CCNNNNNNNGG	3 cut(s)	301, 688, 709
AgsI	TTSAA	8 cut(s)	28, 199, 621, 633, 650, 833, 842, 901
AjnI	CCWGG	4 cut(s)	222, 237, 362, 772
AluBI	AGCT	7 cut(s)	184, 375, 438, 459, 638, 708, 875
AluI	AGCT	7 cut(s)	184, 375, 438, 459, 638, 708, 875
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	2 cut(s)	392, 928
AoxI	GGCC	3 cut(s)	49, 444, 690
ApoI	RAATTY	2 cut(s)	232, 628
AscI	GGCGCGCC	1 cut(s)	677
AspLEI	GCGC	3 cut(s)	43, 679, 681
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	2 cut(s)	45, 674
AsuHPI	GGTGA	2 cut(s)	295, 566
AvaII	GGWCC	1 cut(s)	315
BanII	GRGCYC	3 cut(s)	13, 186, 255
BbrPI	CACGTG	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	186
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	4 cut(s)	224, 239, 364, 774
BcnI	CCSGG	2 cut(s)	45, 674
BcoDI	GTCTC	2 cut(s)	392, 928
BfaI	CTAG	2 cut(s)	809, 872
BfmI	CTRYAG	1 cut(s)	501
BglI	GCCNNNNNGGC	1 cut(s)	482
Bme1390I	CCNGG	6 cut(s)	45, 224, 239, 364, 674, 774
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmrFI	CCNGG	6 cut(s)	45, 224, 239, 364, 674, 774
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpuMI	CCSGG	2 cut(s)	45, 674
BsaAI	YACGTR	1 cut(s)	205
BsaJI	CCNNGG	7 cut(s)	160, 238, 519, 642, 682, 773, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 688, 709
Bse118I	RCCGGY	2 cut(s)	442, 446
Bse1I	ACTGG	2 cut(s)	124, 796
BseBI	CCWGG	4 cut(s)	224, 239, 364, 774
BseDI	CCNNGG	7 cut(s)	160, 238, 519, 642, 682, 773, 887
BseGI	GGATG	2 cut(s)	111, 276
BseLI	CCNNNNNNNGG	3 cut(s)	301, 688, 709
BseMII	CTCAG	3 cut(s)	287, 393, 705
BseNI	ACTGG	2 cut(s)	124, 796
BsePI	GCGCGC	1 cut(s)	677
BseRI	GAGGAG	2 cut(s)	563, 739
BseX3I	CGGCCG	1 cut(s)	444
BsgI	GTGCAG	1 cut(s)	564
Bsh1236I	CGCG	2 cut(s)	41, 679
Bsh1285I	CGRYCG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	51, 446, 692
BsiEI	CGRYCG	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	7 cut(s)	17, 44, 60, 443, 447, 656, 673
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	301, 688, 709
BsmAI	GTCTC	2 cut(s)	392, 928
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	51, 446, 692
Bsp1286I	GDGCHC	3 cut(s)	13, 186, 255
Bsp143I	GATC	3 cut(s)	246, 564, 786
BspACI	CCGC	7 cut(s)	140, 174, 258, 281, 380, 393, 422
BspANI	GGCC	3 cut(s)	51, 446, 692
BspCNI	CTCAG	3 cut(s)	288, 394, 706
BspFNI	CGCG	2 cut(s)	41, 679
BsrFI	RCCGGY	2 cut(s)	442, 446
BsrI	ACTGG	2 cut(s)	124, 796
BssAI	RCCGGY	2 cut(s)	442, 446
BssECI	CCNNGG	7 cut(s)	160, 238, 519, 642, 682, 773, 887
BssHII	GCGCGC	1 cut(s)	677
BssMI	GATC	3 cut(s)	246, 564, 786
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	4 cut(s)	224, 239, 364, 774
Bst4CI	ACNGT	3 cut(s)	32, 68, 82
Bst6I	CTCTTC	1 cut(s)	461
BstBAI	YACGTR	1 cut(s)	205
BstC8I	GCNNGC	8 cut(s)	220, 279, 380, 426, 440, 444, 448, 679
BstDEI	CTNAG	3 cut(s)	296, 402, 714
BstF5I	GGATG	2 cut(s)	111, 276
BstFNI	CGCG	2 cut(s)	41, 679
BstHHI	GCGC	3 cut(s)	43, 679, 681
BstKTI	GATC	3 cut(s)	249, 567, 789
BstMAI	GTCTC	2 cut(s)	392, 928
BstMBI	GATC	3 cut(s)	246, 564, 786
BstMCI	CGRYCG	1 cut(s)	447
BstMWI	GCNNNNNNNGC	9 cut(s)	139, 142, 145, 148, 151, 154, 171, 456, 482
BstNI	CCWGG	4 cut(s)	224, 239, 364, 774
BstSCI	CCNGG	6 cut(s)	43, 222, 237, 362, 672, 772
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	2 cut(s)	41, 679
BstZI	CGGCCG	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	51, 446, 692
BtsCI	GGATG	2 cut(s)	111, 276
BtsIMutI	CAGTG	2 cut(s)	693, 789
Cac8I	GCNNGC	8 cut(s)	220, 279, 380, 426, 440, 444, 448, 679
CfoI	GCGC	3 cut(s)	43, 679, 681
Cfr10I	RCCGGY	2 cut(s)	442, 446
Cfr13I	GGNCC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	69, 770
CviAII	CATG	2 cut(s)	76, 668
CviQI	GTAC	2 cut(s)	69, 770
DdeI	CTNAG	3 cut(s)	296, 402, 714
DpnI	GATC	3 cut(s)	248, 566, 788
DpnII	GATC	3 cut(s)	246, 564, 786
EaeI	YGGCCR	1 cut(s)	444
EagI	CGGCCG	1 cut(s)	444
Eam1104I	CTCTTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	461
Ecl136II	GAGCTC	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	51
Eco24I	GRGCYC	3 cut(s)	13, 186, 255
Eco47I	GGWCC	1 cut(s)	315
Eco52I	CGGCCG	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	184
Eco72I	CACGTG	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	628
EcoRII	CCWGG	4 cut(s)	222, 237, 362, 772
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	3 cut(s)	13, 186, 255
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	79, 671
FaiI	YATR	7 cut(s)	35, 77, 330, 669, 806, 828, 866
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	75, 667
FauI	CCCGC	3 cut(s)	167, 387, 429
FokI	GGATG	2 cut(s)	118, 283
FriOI	GRGCYC	3 cut(s)	13, 186, 255
FspBI	CTAG	2 cut(s)	809, 872
GlaI	GCGC	3 cut(s)	42, 678, 680
HaeIII	GGCC	3 cut(s)	51, 446, 692
HapII	CCGG	7 cut(s)	17, 44, 60, 443, 447, 656, 673
HhaI	GCGC	3 cut(s)	43, 679, 681
Hin1II	CATG	2 cut(s)	79, 671
Hin6I	GCGC	3 cut(s)	41, 677, 679
HinP1I	GCGC	3 cut(s)	41, 677, 679
HindIII	AAGCTT	2 cut(s)	457, 636
HinfI	GANTC	4 cut(s)	100, 515, 557, 602
HpaII	CCGG	7 cut(s)	17, 44, 60, 443, 447, 656, 673
HphI	GGTGA	2 cut(s)	295, 566
Hpy166II	GTNNAC	2 cut(s)	315, 918
Hpy188I	TCNGA	6 cut(s)	105, 231, 304, 523, 643, 888
Hpy8I	GTNNAC	2 cut(s)	315, 918
Hpy99I	CGWCG	2 cut(s)	59, 911
HpyAV	CCTTC	2 cut(s)	529, 848
HpyCH4III	ACNGT	3 cut(s)	32, 68, 82
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	545, 760, 780
HpyF10VI	GCNNNNNNNGC	9 cut(s)	139, 142, 145, 148, 151, 154, 171, 456, 482
HpyF3I	CTNAG	3 cut(s)	296, 402, 714
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	79, 671
HspAI	GCGC	3 cut(s)	41, 677, 679
KroI	GCCGGC	2 cut(s)	442, 446
KroNI	GCCGGC	2 cut(s)	444, 448
Kzo9I	GATC	3 cut(s)	246, 564, 786
MaeI	CTAG	2 cut(s)	809, 872
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	554
MalI	GATC	3 cut(s)	248, 566, 788
MboI	GATC	3 cut(s)	246, 564, 786
MboII	GAAGA	3 cut(s)	478, 521, 597
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	3 cut(s)	13, 186, 255
MluCI	AATT	6 cut(s)	210, 232, 320, 628, 735, 823
MlyI	GAGTC	2 cut(s)	94, 551
MroNI	GCCGGC	2 cut(s)	442, 446
MseI	TTAA	3 cut(s)	462, 882, 940
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	7 cut(s)	17, 44, 60, 443, 447, 656, 673
MspR9I	CCNGG	6 cut(s)	45, 224, 239, 364, 674, 774
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	4 cut(s)	224, 239, 364, 774
MvnI	CGCG	2 cut(s)	41, 679
MwoI	GCNNNNNNNGC	9 cut(s)	139, 142, 145, 148, 151, 154, 171, 456, 482
NaeI	GCCGGC	2 cut(s)	444, 448
NciI	CCSGG	2 cut(s)	45, 674
NdeII	GATC	3 cut(s)	246, 564, 786
NgoMIV	GCCGGC	2 cut(s)	442, 446
NlaIII	CATG	2 cut(s)	79, 671
NmeAIII	GCCGAG	3 cut(s)	234, 421, 707
NmuCI	GTSAC	1 cut(s)	554
PalAI	GGCGCGCC	1 cut(s)	677
PauI	GCGCGC	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	51
PdiI	GCCGGC	2 cut(s)	444, 448
PfeI	GAWTC	2 cut(s)	515, 602
PflMI	CCANNNNNTGG	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	362
PleI	GAGTC	2 cut(s)	94, 551
PmaCI	CACGTG	1 cut(s)	205
PmlI	CACGTG	1 cut(s)	205
PpsI	GAGTC	2 cut(s)	94, 551
Ppu21I	YACGTR	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	4 cut(s)	222, 237, 362, 772
PspCI	CACGTG	1 cut(s)	205
PspGI	CCWGG	4 cut(s)	222, 237, 362, 772
PspPI	GGNCC	1 cut(s)	315
PteI	GCGCGC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	375
RsaI	GTAC	2 cut(s)	70, 771
RsaNI	GTAC	2 cut(s)	69, 770
RseI	CAYNNNNRTG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	462, 882, 940
Sau3AI	GATC	3 cut(s)	246, 564, 786
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	2 cut(s)	94, 551
ScrFI	CCNGG	6 cut(s)	45, 224, 239, 364, 674, 774
SduI	GDGCHC	3 cut(s)	13, 186, 255
SfcI	CTRYAG	1 cut(s)	501
SgsI	GGCGCGCC	1 cut(s)	677
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	6 cut(s)	210, 232, 320, 628, 735, 823
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	7 cut(s)	140, 174, 258, 281, 380, 393, 422
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	809, 872
SstI	GAGCTC	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	6 cut(s)	43, 222, 237, 362, 672, 772
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	32, 68, 82
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	906
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	6 cut(s)	210, 232, 320, 628, 735, 823
TauI	GCSGC	3 cut(s)	142, 261, 395
TfiI	GAWTC	2 cut(s)	515, 602
Tru1I	TTAA	3 cut(s)	462, 882, 940
Tru9I	TTAA	3 cut(s)	462, 882, 940
TscAI	CASTG	2 cut(s)	700, 796
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	7 cut(s)	17, 50, 365, 548, 656, 764, 881
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	700, 796
Van91I	CCANNNNNTGG	1 cut(s)	709
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	2 cut(s)	232, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	2 cut(s)	809, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.