Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008070

Physical Location & Seq

Genomic Coordinates Forward (+)

20364473 .. 20367892

Gene Structure 3420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG134300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAACAGAGCCCTGCCGGAGATGTTGAACTGTATGAACGCGCCAGGAGGCCTCGTCGCCGGAAACTGTACGGACATGACGGTGCTGGACAGACAGAGGACTCGGATGAGGTGGCAGCACGACCAGTTCCTGCAGCAGCCGCAGCAGCAGCACCACCAAGGCTACTTTGGCGGGAACGAGCTCAATGGGGTGTTCAATCACGTGCCAATTGAGGCGAGCCAGGTTCAGAATTTCCAGGGGTTGATCGGGCTCGGCGGCGACTTGGGGATGGGGCAGGCGGTGAAACCCGACCTGAGTTCGGAAAATGGGTGGACCGAATTGGGTTATGGGTCTTGTGGGTTTGAGATGAATAATATTTCCAGGACTTTCAGCTGCCCGCCCAAAGTTGCAGCCGAGACTGAGAGCAACAACGCCGTCGCGCCTGCCAAGAATAGCTCGCCGGCCGGCAAGGAAAGCTTTAAGAAAAGGAAAGCCGATAAGGCACAAAACAATAAGGCTGTAGCAGAAGATGATTCCTCGGACAAAAGAATGAAGGGGTGTGCAGAGGAGGGTGACTCCAAGATCACAGAACAAAATAGCACCAAGAACAACGACAGAGAATCTTCTGCTGATACTTCAAAAGAGAATTCAAAAGCTTCCGAGGTTCAAAAGCCGGATTACATTCATGTCCGGGCGCGCCGAGGTCAGGCCACTGATAGCCACAGCTTGGCTGAGAGAGTGAGGAGGGAAAAAATTAGTGAAAGAATGAAGTATCTGCAAGATTTAGTACCAGGGTGCAACAAGATCACTGGCAAGGCTGGTATGCTAGACGAAATCATCAATTATGTTCAATCCCTTCAACGACAAGTAGAGTTCCTGTCTATGAAACTAGCTGCTGTTAATCCGAGGCTTGATTTCAACATCGACGACTTGTTTACAAAAGAGGTAAGGAGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

312

Amino Acids

34.7

Weight (kDa)

7.62

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	233 - 280	3.3e-07	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34530
fragaria_vesca	FvH4_2g09030 FvH4_2g09030
malus_domestica	MD05G1065100.v1.1 MD10G1074000.v1.1
prunus_persica	Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1
pyrus_communis	pycom05g05640 pycom10g05820
rosa_chinensis	RchiOBHm_Chr6g0264701
rosa_laevigata	RLG00000014234
rosa_multiflora	Rmu_sc0000546.1_g000026
rosa_roxburghii	Rroxscaffold_175G00432010 Rroxscaffold_7G00203210
rosa_rugosa	Rorug06G0014800
rosa_samantha	Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600
rosa_wichuraiana	Rw6G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	706
AccII	CGCG	3 cut(s)	41, 419, 676
AciI	CCGC	5 cut(s)	140, 171, 255, 278, 377
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	2 cut(s)	229, 625
AcvI	CACGTG	1 cut(s)	202
AfaI	GTAC	2 cut(s)	70, 768
AfiI	CCNNNNNNNGG	3 cut(s)	298, 685, 706
AgsI	TTSAA	8 cut(s)	28, 196, 618, 630, 647, 830, 839, 898
AjnI	CCWGG	5 cut(s)	43, 219, 234, 359, 769
AluBI	AGCT	7 cut(s)	181, 372, 435, 456, 635, 705, 872
AluI	AGCT	7 cut(s)	181, 372, 435, 456, 635, 705, 872
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	389, 925
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	3 cut(s)	49, 441, 687
ApeKI	GCWGC	9 cut(s)	115, 133, 136, 142, 145, 148, 372, 389, 872
ApoI	RAATTY	2 cut(s)	229, 625
AscI	GGCGCGCC	1 cut(s)	674
AspLEI	GCGC	4 cut(s)	43, 421, 676, 678
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	2 cut(s)	292, 563
AvaII	GGWCC	1 cut(s)	312
BanII	GRGCYC	3 cut(s)	13, 183, 252
BbrPI	CACGTG	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	9 cut(s)	127, 145, 148, 154, 157, 160, 359, 401, 859
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	1 cut(s)	398
BciT130I	CCWGG	5 cut(s)	45, 221, 236, 361, 771
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	2 cut(s)	389, 925
BfaI	CTAG	2 cut(s)	806, 869
BfmI	CTRYAG	2 cut(s)	131, 498
BglI	GCCNNNNNGGC	1 cut(s)	479
Bme1390I	CCNGG	6 cut(s)	45, 221, 236, 361, 671, 771
Bme18I	GGWCC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	312
BmrFI	CCNGG	6 cut(s)	45, 221, 236, 361, 671, 771
BplI	GAGNNNNNCTC	2 cut(s)	539, 571
BpuMI	CCSGG	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	202
BsaJI	CCNNGG	7 cut(s)	157, 235, 516, 639, 679, 770, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 685, 706
Bse118I	RCCGGY	2 cut(s)	439, 443
Bse1I	ACTGG	2 cut(s)	124, 793
BseBI	CCWGG	5 cut(s)	45, 221, 236, 361, 771
BseDI	CCNNGG	7 cut(s)	157, 235, 516, 639, 679, 770, 884
BseGI	GGATG	2 cut(s)	111, 273
BseLI	CCNNNNNNNGG	3 cut(s)	298, 685, 706
BseMII	CTCAG	3 cut(s)	284, 390, 702
BseNI	ACTGG	2 cut(s)	124, 793
BsePI	GCGCGC	1 cut(s)	674
BseRI	GAGGAG	2 cut(s)	560, 736
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	9 cut(s)	127, 145, 148, 154, 157, 160, 359, 401, 859
BsgI	GTGCAG	1 cut(s)	561
Bsh1236I	CGCG	3 cut(s)	41, 419, 676
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	51, 443, 689
BsiEI	CGRYCG	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	6 cut(s)	17, 60, 440, 444, 653, 670
BslI	CCNNNNNNNGG	3 cut(s)	298, 685, 706
BsmAI	GTCTC	2 cut(s)	389, 925
BsnI	GGCC	3 cut(s)	51, 443, 689
Bsp1286I	GDGCHC	3 cut(s)	13, 183, 252
Bsp143I	GATC	3 cut(s)	243, 561, 783
BspACI	CCGC	5 cut(s)	140, 171, 255, 278, 377
BspANI	GGCC	3 cut(s)	51, 443, 689
BspCNI	CTCAG	3 cut(s)	285, 391, 703
BspFNI	CGCG	3 cut(s)	41, 419, 676
BspMAI	CTGCAG	1 cut(s)	135
BsrFI	RCCGGY	2 cut(s)	439, 443
BsrI	ACTGG	2 cut(s)	124, 793
BssAI	RCCGGY	2 cut(s)	439, 443
BssECI	CCNNGG	7 cut(s)	157, 235, 516, 639, 679, 770, 884
BssHII	GCGCGC	1 cut(s)	674
BssMI	GATC	3 cut(s)	243, 561, 783
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	5 cut(s)	45, 221, 236, 361, 771
Bst4CI	ACNGT	3 cut(s)	32, 68, 82
BstBAI	YACGTR	1 cut(s)	202
BstC8I	GCNNGC	8 cut(s)	217, 276, 377, 423, 437, 441, 445, 676
BstDEI	CTNAG	3 cut(s)	293, 399, 711
BstF5I	GGATG	2 cut(s)	111, 273
BstFNI	CGCG	3 cut(s)	41, 419, 676
BstHHI	GCGC	4 cut(s)	43, 421, 676, 678
BstKTI	GATC	3 cut(s)	246, 564, 786
BstMAI	GTCTC	2 cut(s)	389, 925
BstMBI	GATC	3 cut(s)	243, 561, 783
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	7 cut(s)	139, 142, 145, 148, 168, 453, 479
BstNI	CCWGG	5 cut(s)	45, 221, 236, 361, 771
BstSCI	CCNGG	6 cut(s)	43, 219, 234, 359, 669, 769
BstSFI	CTRYAG	2 cut(s)	131, 498
BstUI	CGCG	3 cut(s)	41, 419, 676
BstV1I	GCAGC	9 cut(s)	127, 145, 148, 154, 157, 160, 359, 401, 859
BstZI	CGGCCG	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	51, 443, 689
BtsCI	GGATG	2 cut(s)	111, 273
BtsIMutI	CAGTG	2 cut(s)	690, 786
Cac8I	GCNNGC	8 cut(s)	217, 276, 377, 423, 437, 441, 445, 676
CaiI	CAGNNNCTG	1 cut(s)	130
CfoI	GCGC	4 cut(s)	43, 421, 676, 678
Cfr10I	RCCGGY	2 cut(s)	439, 443
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	2 cut(s)	69, 767
CviAII	CATG	2 cut(s)	76, 665
CviQI	GTAC	2 cut(s)	69, 767
DdeI	CTNAG	3 cut(s)	293, 399, 711
DpnI	GATC	3 cut(s)	245, 563, 785
DpnII	GATC	3 cut(s)	243, 561, 783
EaeI	YGGCCR	1 cut(s)	441
EagI	CGGCCG	1 cut(s)	441
Ecl136II	GAGCTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	51
Eco24I	GRGCYC	3 cut(s)	13, 183, 252
Eco47I	GGWCC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	5 cut(s)	43, 219, 234, 359, 769
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	3 cut(s)	13, 183, 252
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	79, 668
FaiI	YATR	7 cut(s)	35, 77, 327, 666, 803, 825, 863
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	2 cut(s)	75, 664
FauI	CCCGC	2 cut(s)	164, 384
FokI	GGATG	2 cut(s)	118, 280
FriOI	GRGCYC	3 cut(s)	13, 183, 252
FspBI	CTAG	2 cut(s)	806, 869
GlaI	GCGC	4 cut(s)	42, 420, 675, 677
HaeIII	GGCC	3 cut(s)	51, 443, 689
HapII	CCGG	6 cut(s)	17, 60, 440, 444, 653, 670
HhaI	GCGC	4 cut(s)	43, 421, 676, 678
Hin1II	CATG	2 cut(s)	79, 668
Hin6I	GCGC	4 cut(s)	41, 419, 674, 676
HinP1I	GCGC	4 cut(s)	41, 419, 674, 676
HindIII	AAGCTT	2 cut(s)	454, 633
HinfI	GANTC	4 cut(s)	100, 512, 554, 599
HpaII	CCGG	6 cut(s)	17, 60, 440, 444, 653, 670
HphI	GGTGA	2 cut(s)	292, 563
Hpy166II	GTNNAC	2 cut(s)	312, 915
Hpy188I	TCNGA	6 cut(s)	105, 228, 301, 520, 640, 885
Hpy8I	GTNNAC	2 cut(s)	312, 915
Hpy99I	CGWCG	3 cut(s)	59, 419, 908
HpyAV	CCTTC	2 cut(s)	526, 845
HpyCH4III	ACNGT	3 cut(s)	32, 68, 82
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	133, 389, 542, 757, 777
HpyF10VI	GCNNNNNNNGC	7 cut(s)	139, 142, 145, 148, 168, 453, 479
HpyF3I	CTNAG	3 cut(s)	293, 399, 711
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	79, 668
HspAI	GCGC	4 cut(s)	41, 419, 674, 676
KroI	GCCGGC	2 cut(s)	439, 443
KroNI	GCCGGC	2 cut(s)	441, 445
Kzo9I	GATC	3 cut(s)	243, 561, 783
Lsp1109I	GCAGC	9 cut(s)	127, 145, 148, 154, 157, 160, 359, 401, 859
MaeI	CTAG	2 cut(s)	806, 869
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	3 cut(s)	245, 563, 785
MboI	GATC	3 cut(s)	243, 561, 783
MboII	GAAGA	2 cut(s)	518, 594
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	13, 183, 252
MluCI	AATT	6 cut(s)	207, 229, 317, 625, 732, 820
MlyI	GAGTC	2 cut(s)	94, 548
MroNI	GCCGGC	2 cut(s)	439, 443
MseI	TTAA	3 cut(s)	459, 879, 937
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	372
MspI	CCGG	6 cut(s)	17, 60, 440, 444, 653, 670
MspR9I	CCNGG	6 cut(s)	45, 221, 236, 361, 671, 771
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	5 cut(s)	45, 221, 236, 361, 771
MvnI	CGCG	3 cut(s)	41, 419, 676
MwoI	GCNNNNNNNGC	7 cut(s)	139, 142, 145, 148, 168, 453, 479
NaeI	GCCGGC	2 cut(s)	441, 445
NciI	CCSGG	1 cut(s)	671
NdeII	GATC	3 cut(s)	243, 561, 783
NgoMIV	GCCGGC	2 cut(s)	439, 443
NlaIII	CATG	2 cut(s)	79, 668
NmeAIII	GCCGAG	3 cut(s)	231, 418, 704
NmuCI	GTSAC	1 cut(s)	551
PalAI	GGCGCGCC	1 cut(s)	674
PauI	GCGCGC	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	51
PdiI	GCCGGC	2 cut(s)	441, 445
PfeI	GAWTC	2 cut(s)	512, 599
PflMI	CCANNNNNTGG	1 cut(s)	706
PfoI	TCCNGGA	1 cut(s)	359
PleI	GAGTC	2 cut(s)	94, 548
PmaCI	CACGTG	1 cut(s)	202
PmlI	CACGTG	1 cut(s)	202
PpsI	GAGTC	2 cut(s)	94, 548
Ppu21I	YACGTR	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	5 cut(s)	43, 219, 234, 359, 769
PspCI	CACGTG	1 cut(s)	202
PspGI	CCWGG	5 cut(s)	43, 219, 234, 359, 769
PspPI	GGNCC	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	130
PteI	GCGCGC	1 cut(s)	674
PvuII	CAGCTG	1 cut(s)	372
RsaI	GTAC	2 cut(s)	70, 768
RsaNI	GTAC	2 cut(s)	69, 767
RseI	CAYNNNNRTG	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	459, 879, 937
Sau3AI	GATC	3 cut(s)	243, 561, 783
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	2 cut(s)	94, 548
ScrFI	CCNGG	6 cut(s)	45, 221, 236, 361, 671, 771
SduI	GDGCHC	3 cut(s)	13, 183, 252
SfcI	CTRYAG	2 cut(s)	131, 498
SgsI	GGCGCGCC	1 cut(s)	674
SinI	GGWCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	6 cut(s)	207, 229, 317, 625, 732, 820
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	5 cut(s)	140, 171, 255, 278, 377
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	806, 869
SstI	GAGCTC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	6 cut(s)	43, 219, 234, 359, 669, 769
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	3 cut(s)	32, 68, 82
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	903
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	6 cut(s)	207, 229, 317, 625, 732, 820
TauI	GCSGC	2 cut(s)	142, 258
TfiI	GAWTC	2 cut(s)	512, 599
Tru1I	TTAA	3 cut(s)	459, 879, 937
Tru9I	TTAA	3 cut(s)	459, 879, 937
TscAI	CASTG	2 cut(s)	697, 793
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	9 cut(s)	115, 133, 136, 142, 145, 148, 372, 389, 872
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	7 cut(s)	17, 50, 362, 545, 653, 761, 878
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	697, 793
Van91I	CCANNNNNTGG	1 cut(s)	706
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	2 cut(s)	229, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XspI	CTAG	2 cut(s)	806, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.