Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34530 |
| fragaria_vesca | FvH4_2g09030 FvH4_2g09030 |
| malus_domestica | MD05G1065100.v1.1 MD10G1074000.v1.1 |
| prunus_persica | Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 |
| pyrus_communis | pycom05g05640 pycom10g05820 |
| rosa_chinensis | RchiOBHm_Chr6g0264701 |
| rosa_laevigata | RLG00000014234 |
| rosa_multiflora | Rmu_sc0000546.1_g000026 |
| rosa_roxburghii | Rroxscaffold_175G00432010 Rroxscaffold_7G00203210 |
| rosa_rugosa | Rorug06G0014800 |
| rosa_samantha | Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600 |
| rosa_wichuraiana | Rw6G011640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 126 |
| Acc16I | TGCGCA | 1 cut(s) | 583 |
| Acc36I | ACCTGC | 1 cut(s) | 126 |
| AccB1I | GGYRCC | 2 cut(s) | 47, 114 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 757 |
| AccBSI | CCGCTC | 1 cut(s) | 91 |
| AccII | CGCG | 2 cut(s) | 937, 992 |
| AclWI | GGATC | 2 cut(s) | 128, 1144 |
| AcoI | YGGCCR | 2 cut(s) | 426, 993 |
| AcsI | RAATTY | 2 cut(s) | 1102, 1241 |
| AcyI | GRCGYC | 1 cut(s) | 450 |
| AfaI | GTAC | 5 cut(s) | 70, 167, 522, 819, 1062 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 283, 757, 1010, 1286 |
| AgsI | TTSAA | 9 cut(s) | 669, 681, 698, 881, 890, 949, 1234, 1271, 1298 |
| AjnI | CCWGG | 2 cut(s) | 398, 820 |
| Alw21I | GWGCWC | 2 cut(s) | 87, 1141 |
| Alw26I | GTCTC | 2 cut(s) | 465, 588 |
| AlwI | GGATC | 2 cut(s) | 128, 1144 |
| Ama87I | CYCGRG | 2 cut(s) | 43, 86 |
| AoxI | GGCC | 3 cut(s) | 426, 738, 993 |
| ApeKI | GCWGC | 7 cut(s) | 145, 154, 157, 347, 411, 542, 923 |
| ApoI | RAATTY | 2 cut(s) | 1102, 1241 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 947, 979 |
| AseI | ATTAAT | 1 cut(s) | 369 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1161 |
| AspLEI | GCGC | 3 cut(s) | 347, 584, 992 |
| AsuC2I | CCSGG | 5 cut(s) | 44, 45, 61, 484, 722 |
| AsuHPI | GGTGA | 4 cut(s) | 266, 277, 671, 781 |
| AsuII | TTCGAA | 1 cut(s) | 1123 |
| AsuNHI | GCTAGC | 1 cut(s) | 1301 |
| AvaI | CYCGRG | 2 cut(s) | 43, 86 |
| BaeGI | GKGCMC | 2 cut(s) | 50, 727 |
| BanI | GGYRCC | 2 cut(s) | 47, 114 |
| BanII | GRGCYC | 1 cut(s) | 103 |
| BauI | CACGAG | 1 cut(s) | 122 |
| Bbv12I | GWGCWC | 2 cut(s) | 87, 1141 |
| BbvI | GCAGC | 7 cut(s) | 132, 166, 169, 359, 398, 529, 910 |
| BccI | CCATC | 3 cut(s) | 288, 1139, 1309 |
| BceAI | ACGGC | 2 cut(s) | 437, 743 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 37, 71, 83, 117, 947, 981 |
| BciT130I | CCWGG | 2 cut(s) | 400, 822 |
| BcnI | CCSGG | 5 cut(s) | 44, 45, 61, 484, 722 |
| BcoDI | GTCTC | 2 cut(s) | 465, 588 |
| BfaI | CTAG | 2 cut(s) | 920, 1302 |
| BfmI | CTRYAG | 2 cut(s) | 537, 543 |
| BfuAI | ACCTGC | 1 cut(s) | 126 |
| BlpI | GCTNAGC | 1 cut(s) | 188 |
| Bme1390I | CCNGG | 7 cut(s) | 44, 45, 61, 400, 484, 722, 822 |
| BmeT110I | CYCGRG | 2 cut(s) | 43, 86 |
| BmiI | GGNNCC | 2 cut(s) | 49, 116 |
| BmrFI | CCNGG | 7 cut(s) | 44, 45, 61, 400, 484, 722, 822 |
| BmsI | GCATC | 3 cut(s) | 12, 157, 1201 |
| BmtI | GCTAGC | 1 cut(s) | 1305 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 581, 613 |
| Bpu10I | CCTNAGC | 1 cut(s) | 228 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 188 |
| Bpu14I | TTCGAA | 1 cut(s) | 1123 |
| BpuEI | CTTGAG | 1 cut(s) | 1170 |
| BpuMI | CCSGG | 5 cut(s) | 44, 45, 61, 484, 722 |
| Bsa29I | ATCGAT | 1 cut(s) | 1148 |
| BsaHI | GRCGYC | 1 cut(s) | 450 |
| BsaJI | CCNNGG | 4 cut(s) | 42, 43, 821, 935 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 283, 757, 1010, 1286 |
| Bse1I | ACTGG | 2 cut(s) | 844, 1058 |
| BseBI | CCWGG | 2 cut(s) | 400, 822 |
| BseCI | ATCGAT | 1 cut(s) | 1148 |
| BseDI | CCNNGG | 4 cut(s) | 42, 43, 821, 935 |
| BseGI | GGATG | 4 cut(s) | 111, 1020, 1172, 1216 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 283, 757, 1010, 1286 |
| BseMII | CTCAG | 5 cut(s) | 242, 423, 476, 681, 753 |
| BseNI | ACTGG | 2 cut(s) | 844, 1058 |
| BseRI | GAGGAG | 3 cut(s) | 374, 602, 787 |
| BseSI | GKGCMC | 2 cut(s) | 50, 727 |
| BseXI | GCAGC | 7 cut(s) | 132, 166, 169, 359, 398, 529, 910 |
| BsgI | GTGCAG | 2 cut(s) | 104, 1067 |
| Bsh1236I | CGCG | 2 cut(s) | 937, 992 |
| Bsh1285I | CGRYCG | 1 cut(s) | 483 |
| BshFI | GGCC | 3 cut(s) | 428, 740, 995 |
| BshNI | GGYRCC | 2 cut(s) | 47, 114 |
| BshVI | ATCGAT | 1 cut(s) | 1148 |
| BsiEI | CGRYCG | 1 cut(s) | 483 |
| BsiHKAI | GWGCWC | 2 cut(s) | 87, 1141 |
| BsiHKCI | CYCGRG | 2 cut(s) | 43, 86 |
| BsiSI | CCGG | 6 cut(s) | 17, 44, 60, 215, 483, 721 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 283, 757, 1010, 1286 |
| BsmAI | GTCTC | 2 cut(s) | 465, 588 |
| BsnI | GGCC | 3 cut(s) | 428, 740, 995 |
| BsoBI | CYCGRG | 2 cut(s) | 43, 86 |
| Bsp119I | TTCGAA | 1 cut(s) | 1123 |
| Bsp1286I | GDGCHC | 5 cut(s) | 50, 87, 103, 727, 1141 |
| Bsp143I | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 188 |
| BspANI | GGCC | 3 cut(s) | 428, 740, 995 |
| BspCNI | CTCAG | 5 cut(s) | 241, 424, 475, 682, 754 |
| BspDI | ATCGAT | 1 cut(s) | 1148 |
| BspFNI | CGCG | 2 cut(s) | 937, 992 |
| BspLI | GGNNCC | 2 cut(s) | 49, 116 |
| BspMAI | CTGCAG | 1 cut(s) | 547 |
| BspMI | ACCTGC | 1 cut(s) | 126 |
| BspOI | GCTAGC | 1 cut(s) | 1305 |
| BspPI | GGATC | 2 cut(s) | 128, 1144 |
| BspT104I | TTCGAA | 1 cut(s) | 1123 |
| BspT107I | GGYRCC | 2 cut(s) | 47, 114 |
| BsrBI | CCGCTC | 1 cut(s) | 91 |
| BsrI | ACTGG | 2 cut(s) | 844, 1058 |
| BssECI | CCNNGG | 4 cut(s) | 42, 43, 821, 935 |
| BssMI | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| BssNI | GRCGYC | 1 cut(s) | 450 |
| BssSI | CACGAG | 1 cut(s) | 122 |
| Bst2BI | CACGAG | 1 cut(s) | 122 |
| Bst2UI | CCWGG | 2 cut(s) | 400, 822 |
| Bst4CI | ACNGT | 4 cut(s) | 32, 68, 82, 424 |
| Bst6I | CTCTTC | 2 cut(s) | 497, 891 |
| BstACI | GRCGYC | 1 cut(s) | 450 |
| BstBI | TTCGAA | 1 cut(s) | 1123 |
| BstC8I | GCNNGC | 5 cut(s) | 476, 850, 854, 988, 1303 |
| BstDEI | CTNAG | 6 cut(s) | 188, 228, 432, 462, 690, 762 |
| BstDSI | CCRYGG | 1 cut(s) | 935 |
| BstF5I | GGATG | 4 cut(s) | 111, 1020, 1172, 1216 |
| BstFNI | CGCG | 2 cut(s) | 937, 992 |
| BstHHI | GCGC | 3 cut(s) | 347, 584, 992 |
| BstKTI | GATC | 4 cut(s) | 136, 606, 837, 1152 |
| BstMAI | GTCTC | 2 cut(s) | 465, 588 |
| BstMBI | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| BstMCI | CGRYCG | 1 cut(s) | 483 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 22, 91, 151, 154, 224, 542, 849, 992 |
| BstNI | CCWGG | 2 cut(s) | 400, 822 |
| BstNSI | RCATGY | 1 cut(s) | 856 |
| BstSCI | CCNGG | 7 cut(s) | 42, 43, 59, 398, 482, 720, 820 |
| BstSFI | CTRYAG | 2 cut(s) | 537, 543 |
| BstSLI | GKGCMC | 2 cut(s) | 50, 727 |
| BstUI | CGCG | 2 cut(s) | 937, 992 |
| BstV1I | GCAGC | 7 cut(s) | 132, 166, 169, 359, 398, 529, 910 |
| Bsu15I | ATCGAT | 1 cut(s) | 1148 |
| BsuRI | GGCC | 3 cut(s) | 428, 740, 995 |
| BsuTUI | ATCGAT | 1 cut(s) | 1148 |
| BtgI | CCRYGG | 1 cut(s) | 935 |
| BtsCI | GGATG | 4 cut(s) | 111, 1020, 1172, 1216 |
| BtsIMutI | CAGTG | 4 cut(s) | 741, 793, 837, 1141 |
| BveI | ACCTGC | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 5 cut(s) | 476, 850, 854, 988, 1303 |
| CfoI | GCGC | 3 cut(s) | 347, 584, 992 |
| Cfr42I | CCGCGG | 1 cut(s) | 938 |
| Cfr9I | CCCGGG | 1 cut(s) | 43 |
| ClaI | ATCGAT | 1 cut(s) | 1148 |
| CseI | GACGC | 1 cut(s) | 458 |
| Csp6I | GTAC | 5 cut(s) | 69, 166, 521, 818, 1061 |
| CviAII | CATG | 4 cut(s) | 76, 238, 716, 853 |
| CviQI | GTAC | 5 cut(s) | 69, 166, 521, 818, 1061 |
| DdeI | CTNAG | 6 cut(s) | 188, 228, 432, 462, 690, 762 |
| DpnI | GATC | 4 cut(s) | 135, 605, 836, 1151 |
| DpnII | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| DraI | TTTAAA | 1 cut(s) | 1311 |
| EaeI | YGGCCR | 2 cut(s) | 426, 993 |
| Eam1104I | CTCTTC | 2 cut(s) | 497, 891 |
| EarI | CTCTTC | 2 cut(s) | 497, 891 |
| Eco24I | GRGCYC | 1 cut(s) | 103 |
| Eco88I | CYCGRG | 2 cut(s) | 43, 86 |
| EcoRI | GAATTC | 1 cut(s) | 1241 |
| EcoRII | CCWGG | 2 cut(s) | 398, 820 |
| EcoT38I | GRGCYC | 1 cut(s) | 103 |
| FaeI | CATG | 4 cut(s) | 79, 241, 719, 856 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 458, 490, 479, 511 |
| FatI | CATG | 4 cut(s) | 75, 237, 715, 852 |
| FauI | CCCGC | 2 cut(s) | 170, 211 |
| FauNDI | CATATG | 1 cut(s) | 1042 |
| FokI | GGATG | 4 cut(s) | 118, 1027, 1159, 1223 |
| FriOI | GRGCYC | 1 cut(s) | 103 |
| FspBI | CTAG | 2 cut(s) | 920, 1302 |
| FspI | TGCGCA | 1 cut(s) | 583 |
| GlaI | GCGC | 3 cut(s) | 346, 583, 991 |
| HaeIII | GGCC | 3 cut(s) | 428, 740, 995 |
| HapII | CCGG | 6 cut(s) | 17, 44, 60, 215, 483, 721 |
| HgaI | GACGC | 1 cut(s) | 458 |
| HhaI | GCGC | 3 cut(s) | 347, 584, 992 |
| Hin1I | GRCGYC | 1 cut(s) | 450 |
| Hin1II | CATG | 4 cut(s) | 79, 241, 719, 856 |
| Hin6I | GCGC | 3 cut(s) | 345, 582, 990 |
| HinP1I | GCGC | 3 cut(s) | 345, 582, 990 |
| HindIII | AAGCTT | 2 cut(s) | 493, 684 |
| HinfI | GANTC | 4 cut(s) | 211, 257, 596, 650 |
| HpaII | CCGG | 6 cut(s) | 17, 44, 60, 215, 483, 721 |
| HphI | GGTGA | 4 cut(s) | 266, 277, 671, 781 |
| Hpy166II | GTNNAC | 1 cut(s) | 334 |
| Hpy188I | TCNGA | 8 cut(s) | 105, 210, 286, 465, 691, 1005, 1024, 1111 |
| Hpy188III | TCNNGA | 2 cut(s) | 331, 1166 |
| Hpy8I | GTNNAC | 1 cut(s) | 334 |
| Hpy99I | CGWCG | 3 cut(s) | 452, 863, 1009 |
| HpyAV | CCTTC | 3 cut(s) | 61, 481, 502 |
| HpyCH4III | ACNGT | 4 cut(s) | 32, 68, 82, 424 |
| HpyCH4V | TGCA | 8 cut(s) | 121, 148, 545, 808, 828, 1040, 1048, 1202 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 22, 91, 151, 154, 224, 542, 849, 992 |
| HpyF3I | CTNAG | 6 cut(s) | 188, 228, 432, 462, 690, 762 |
| Hsp92I | GRCGYC | 1 cut(s) | 450 |
| Hsp92II | CATG | 4 cut(s) | 79, 241, 719, 856 |
| HspAI | GCGC | 3 cut(s) | 345, 582, 990 |
| KspI | CCGCGG | 1 cut(s) | 938 |
| Kzo9I | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| LmnI | GCTCC | 1 cut(s) | 1144 |
| Lsp1109I | GCAGC | 7 cut(s) | 132, 166, 169, 359, 398, 529, 910 |
| LweI | GCATC | 3 cut(s) | 12, 157, 1201 |
| MaeI | CTAG | 2 cut(s) | 920, 1302 |
| MaeIII | GTNAC | 1 cut(s) | 254 |
| MalI | GATC | 4 cut(s) | 135, 605, 836, 1151 |
| MbiI | CCGCTC | 1 cut(s) | 91 |
| MboI | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| MboII | GAAGA | 7 cut(s) | 478, 514, 560, 645, 878, 1137, 1266 |
| MhlI | GDGCHC | 5 cut(s) | 50, 87, 103, 727, 1141 |
| MlyI | GAGTC | 2 cut(s) | 251, 590 |
| MmeI | TCCRAC | 3 cut(s) | 468, 1028, 1270 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1161 |
| MseI | TTAA | 5 cut(s) | 369, 498, 930, 1053, 1310 |
| MslI | CAYNNNNRTG | 1 cut(s) | 80 |
| MspA1I | CMGCKG | 3 cut(s) | 145, 431, 937 |
| MspI | CCGG | 6 cut(s) | 17, 44, 60, 215, 483, 721 |
| MspR9I | CCNGG | 7 cut(s) | 44, 45, 61, 400, 484, 722, 822 |
| MvaI | CCWGG | 2 cut(s) | 400, 822 |
| MvnI | CGCG | 2 cut(s) | 937, 992 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 22, 91, 151, 154, 224, 542, 849, 992 |
| NciI | CCSGG | 5 cut(s) | 44, 45, 61, 484, 722 |
| NdeI | CATATG | 1 cut(s) | 1042 |
| NdeII | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| NheI | GCTAGC | 1 cut(s) | 1301 |
| NlaIII | CATG | 4 cut(s) | 79, 241, 719, 856 |
| NlaIV | GGNNCC | 2 cut(s) | 49, 116 |
| NmeAIII | GCCGAG | 1 cut(s) | 239 |
| NmuCI | GTSAC | 1 cut(s) | 254 |
| NsbI | TGCGCA | 1 cut(s) | 583 |
| NspI | RCATGY | 1 cut(s) | 856 |
| NspV | TTCGAA | 1 cut(s) | 1123 |
| PaeI | GCATGC | 1 cut(s) | 856 |
| PaeR7I | CTCGAG | 1 cut(s) | 86 |
| PaqCI | CACCTGC | 1 cut(s) | 126 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1161 |
| PfeI | GAWTC | 2 cut(s) | 211, 650 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 757 |
| PfoI | TCCNGGA | 1 cut(s) | 398 |
| PleI | GAGTC | 2 cut(s) | 251, 590 |
| PpsI | GAGTC | 2 cut(s) | 251, 590 |
| PshBI | ATTAAT | 1 cut(s) | 369 |
| Psp6I | CCWGG | 2 cut(s) | 398, 820 |
| PspGI | CCWGG | 2 cut(s) | 398, 820 |
| PspN4I | GGNNCC | 2 cut(s) | 49, 116 |
| PspXI | VCTCGAGB | 1 cut(s) | 86 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 189, 221 |
| PstI | CTGCAG | 1 cut(s) | 547 |
| PvuII | CAGCTG | 1 cut(s) | 145 |
| RsaI | GTAC | 5 cut(s) | 70, 167, 522, 819, 1062 |
| RsaNI | GTAC | 5 cut(s) | 69, 166, 521, 818, 1061 |
| RseI | CAYNNNNRTG | 1 cut(s) | 80 |
| SacII | CCGCGG | 1 cut(s) | 938 |
| SaqAI | TTAA | 5 cut(s) | 369, 498, 930, 1053, 1310 |
| Sau3AI | GATC | 4 cut(s) | 133, 603, 834, 1149 |
| SchI | GAGTC | 2 cut(s) | 251, 590 |
| ScrFI | CCNGG | 7 cut(s) | 44, 45, 61, 400, 484, 722, 822 |
| SduI | GDGCHC | 5 cut(s) | 50, 87, 103, 727, 1141 |
| SfaNI | GCATC | 3 cut(s) | 12, 157, 1201 |
| SfcI | CTRYAG | 2 cut(s) | 537, 543 |
| Sfr274I | CTCGAG | 1 cut(s) | 86 |
| Sfr303I | CCGCGG | 1 cut(s) | 938 |
| SfuI | TTCGAA | 1 cut(s) | 1123 |
| SgrBI | CCGCGG | 1 cut(s) | 938 |
| SlaI | CTCGAG | 1 cut(s) | 86 |
| SmaI | CCCGGG | 1 cut(s) | 45 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 80 |
| SmlI | CTYRAG | 2 cut(s) | 86, 1185 |
| SmoI | CTYRAG | 2 cut(s) | 86, 1185 |
| SphI | GCATGC | 1 cut(s) | 856 |
| SspI | AATATT | 1 cut(s) | 394 |
| SspMI | CTAG | 2 cut(s) | 920, 1302 |
| StyD4I | CCNGG | 7 cut(s) | 42, 43, 59, 398, 482, 720, 820 |
| TaaI | ACNGT | 4 cut(s) | 32, 68, 82, 424 |
| TaqI | TCGA | 5 cut(s) | 87, 858, 1123, 1148, 1167 |
| TatI | WGTACW | 1 cut(s) | 1060 |
| TauI | GCSGC | 4 cut(s) | 94, 431, 940, 995 |
| TfiI | GAWTC | 2 cut(s) | 211, 650 |
| Tru1I | TTAA | 5 cut(s) | 369, 498, 930, 1053, 1310 |
| Tru9I | TTAA | 5 cut(s) | 369, 498, 930, 1053, 1310 |
| TscAI | CASTG | 4 cut(s) | 748, 793, 844, 1141 |
| TseFI | GTSAC | 1 cut(s) | 254 |
| TseI | GCWGC | 7 cut(s) | 145, 154, 157, 347, 411, 542, 923 |
| Tsp45I | GTSAC | 1 cut(s) | 254 |
| TspDTI | ATGAA | 9 cut(s) | 17, 50, 122, 226, 587, 704, 812, 929, 1065 |
| TspGWI | ACGGA | 1 cut(s) | 86 |
| TspMI | CCCGGG | 1 cut(s) | 43 |
| TspRI | CASTG | 4 cut(s) | 748, 793, 844, 1141 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 757 |
| VspI | ATTAAT | 1 cut(s) | 369 |
| XapI | RAATTY | 2 cut(s) | 1102, 1241 |
| XceI | RCATGY | 1 cut(s) | 856 |
| XhoI | CTCGAG | 1 cut(s) | 86 |
| XmaI | CCCGGG | 1 cut(s) | 43 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1161 |
| XspI | CTAG | 2 cut(s) | 920, 1302 |