Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008070

Physical Location & Seq

Genomic Coordinates Reverse (-)

1930599 .. 1931302

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTTAGAGCAATAATATATGGAGGGATCCATGGATTCCAGATTCCTATCCACGTTGCCCTTTATTGCCACAACCAAGAGACGCTCCTAAACAGGAGAGCCCCAAGAGATAGGCTGGTTTGGCATTTTAATACCAAAGGTACGTTCAATACAAAGAGCGCATATTATGTTGCAAGAGACATGGCATTAGGTCTGGTACTTGCTCCTCCACGACCCACAGATATATATTCTAAGCTATGGTTAGCTATATGGAATGCCAAAGTCCCAAATAAGGTAGCTTTACAGGTCTGGAGATCATGTGGAAATATATTGCCAAACTGTATATGCTTGAGTTCGAAAGGTTATATGGGGAACCAAACTTGCCCAATCTGTGCAATAGGAGTTGAAGACAATATTCATGTATTTGCCAGGGGCACTTATGTCGAAGAAGTGTGGGCAGCAACGGCTATTCCAGTAATTCCACTACCTTCACCAAGTATTACGGAGTTGAAAGATTGGCTTCTACATCTTGTACACAGTGTAGGAAAGGATGTTTTTGCGAAGGTCATGATGATAATATGGGGCATATGGAAAAATAGAAATTCTCAAAGTTTGGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

200

Amino Acids

22.52

Weight (kDa)

9.51

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	76 - 145	1.1e-08	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008070)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34530
fragaria_vesca	FvH4_2g09030 FvH4_2g09030
malus_domestica	MD05G1065100.v1.1 MD10G1074000.v1.1
prunus_persica	Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1
pyrus_communis	pycom05g05640 pycom10g05820
rosa_chinensis	RchiOBHm_Chr6g0264701
rosa_laevigata	RLG00000014234
rosa_multiflora	Rmu_sc0000546.1_g000026
rosa_roxburghii	Rroxscaffold_175G00432010 Rroxscaffold_7G00203210
rosa_rugosa	Rorug06G0014800
rosa_samantha	Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600
rosa_wichuraiana	Rw6G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	22, 35
AcsI	RAATTY	1 cut(s)	580
AfaI	GTAC	3 cut(s)	142, 198, 513
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	3 cut(s)	148, 386, 490
AjnI	CCWGG	1 cut(s)	407
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	3 cut(s)	235, 245, 278
AluI	AGCT	3 cut(s)	235, 245, 278
Alw26I	GTCTC	2 cut(s)	74, 171
AlwI	GGATC	2 cut(s)	22, 35
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	580
AspLEI	GCGC	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	462
AsuII	TTCGAA	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	74, 171
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	29, 353
BmrFI	CCNGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	393
BpmI	CTGGAG	1 cut(s)	310
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	349
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	31, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	283, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	452
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	2 cut(s)	31, 408
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	2 cut(s)	74, 171
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	259
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	103, 416
Bsp1407I	TGTACA	1 cut(s)	511
Bsp143I	GATC	2 cut(s)	27, 293
Bsp19I	CCATGG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	29, 353
BspPI	GGATC	2 cut(s)	22, 35
BspT104I	TTCGAA	1 cut(s)	335
BsrGI	TGTACA	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	31, 408
BssMI	GATC	2 cut(s)	27, 293
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	320, 518
BstAUI	TGTACA	1 cut(s)	511
BstBI	TTCGAA	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	30, 296
BstMAI	GTCTC	2 cut(s)	74, 171
BstMBI	GATC	2 cut(s)	27, 293
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 443
BstNI	CCWGG	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	523
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	161
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	141, 197, 512
CviAII	CATG	5 cut(s)	32, 181, 297, 398, 547
CviJI	RGCY	7 cut(s)	101, 115, 235, 245, 278, 446, 499
CviKI_1	RGCY	7 cut(s)	101, 115, 235, 245, 278, 446, 499
CviQI	GTAC	3 cut(s)	141, 197, 512
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	29, 295
DpnII	GATC	2 cut(s)	27, 293
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	5 cut(s)	35, 184, 300, 401, 550
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	5 cut(s)	31, 180, 296, 397, 546
FauNDI	CATATG	1 cut(s)	566
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	438
GlaI	GCGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	35, 184, 300, 401, 550
Hin6I	GCGC	1 cut(s)	159
HinP1I	GCGC	1 cut(s)	159
HinfI	GANTC	2 cut(s)	36, 43
HphI	GGTGA	1 cut(s)	462
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188III	TCNNGA	3 cut(s)	40, 289, 547
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	2 cut(s)	477, 535
HpyCH4III	ACNGT	2 cut(s)	320, 518
HpyCH4IV	ACGT	2 cut(s)	54, 143
HpyCH4V	TGCA	2 cut(s)	173, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 443
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	54, 143
Hsp92II	CATG	5 cut(s)	35, 184, 300, 401, 550
HspAI	GCGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	27, 293
LmnI	GCTCC	2 cut(s)	90, 208
LpnPI	CCDG	9 cut(s)	53, 79, 101, 179, 269, 274, 394, 421, 465
Lsp1109I	GCAGC	1 cut(s)	449
MaeII	ACGT	2 cut(s)	54, 143
MalI	GATC	2 cut(s)	29, 295
MboI	GATC	2 cut(s)	27, 293
MboII	GAAGA	2 cut(s)	398, 437
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	103, 416
MluCI	AATT	2 cut(s)	456, 580
MnlI	CCTC	2 cut(s)	17, 216
MseI	TTAA	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	409
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	121, 443
NcoI	CCATGG	1 cut(s)	31
NdeI	CATATG	1 cut(s)	566
NdeII	GATC	2 cut(s)	27, 293
NlaIII	CATG	5 cut(s)	35, 184, 300, 401, 550
NlaIV	GGNNCC	2 cut(s)	29, 353
NspV	TTCGAA	1 cut(s)	335
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	36, 43
PkrI	GCNGC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	29, 353
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	3 cut(s)	142, 198, 513
RsaNI	GTAC	3 cut(s)	141, 197, 512
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	27, 293
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	103, 416
SfuI	TTCGAA	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	2 cut(s)	456, 580
SspI	AATATT	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	320, 518
TaiI	ACGT	2 cut(s)	57, 146
TaqI	TCGA	2 cut(s)	335, 423
TasI	AATT	2 cut(s)	456, 580
TatI	WGTACW	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	36, 43
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	523
TseI	GCWGC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	386
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	1 cut(s)	523
XapI	RAATTY	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.