pycom10g05820

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
6392986 .. 6395608
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g05820.5

Sequence Viewer

Length: 1293 bp
ATGAACCGAGCTTTACCCGAGATGTTGAACTGTATGAACGCGCCGGGGACATTTATAGCCGGAAACTGTACCGACATGACGGTGCTGGAGAGGCAGAGGGCCCGGATGAAGTGGCAGCAGAGTGACCATCATGATCAACAGCAGCAGCAGATTCAGTATAATTTTGGCGGGGGCGAGCTTAGTGGGGTTTTCTCCCTTCCAATTCATGCTCAGGGGCTTCAGGGTTTTCTGAGTGGTAACCGGGCGGTGAAACCCGACCCGAGTTCCGAAAACGGGTGGGCTGAATTGGGTTTCGGGTCTTGTGGGTTGGTCATGAATAATAATGGCACAGCAGGGTTTGAAGGGATGGGTAATGCTCTCAATAACAACATCTCCAGGACTTTTAGCTGCCCGCCCACTGTAGCCACCGAGAAGACGTCCGGCGACACCGTTTTGTCTCAAAAGCTTAGCTTGCCGGCAGGGAAAGAAAGCTTTAAGAAGAGGAAGGCTGATAAGGTGCAGATCAATAAGGCTGCTGCTGCTGCAGAAAGTGAAAGCACAGAGAAAAGAATAAAAAGTTGTGCAGAAAAAGGGGACTCCAAGATCACAGAGCAAACCAGCACCAAGAACAACGACGGAGAATCTTCTGGTGATACTTCAAAGGACAATTCAAAAGCTTCTGAGGTTCAAAAGCCTGATTACATCCATGTCCGTGCGCGGCGAGGTCAGGCCACGGATAGCCACAGCTTGGCTGAGAGGGTGAGGAGGGAAAAGATCAGTGAAAGAATGAAATATCTGCAAGATTTAGTACCGGGGTGCAACAAGATCACTGGCAAGGCCGGCATGCTTGATGAAATCATCAATTATGTTCAGTCTCTTCAACGACAAGTAGAGTTCCTGTCTATGAAACTAGCTGCTGTGAATCCGAGGCTTGACTTCAACATCGACGAGTTGTTTGCAAAAGAGATGTTTCCTACGTGTGCGGCCAATTTTCCGACGATGGGGATGTCTTCAGAAATGACCAATTCTGTGTATCTTCAGTTGAATCCAATGCAACAATTGGTTTCATCTTCTGGGTTGGATATGGGGTTAGATTCCACTGATTTGGCACTTCGAAGAACCATAAGCGCTCCGAGTTCGATCCCTGAACCATTTCTTGACACATCCTGTTTCACTCAACCCCAACCTACGGCAATTTGGGATGCTGATTTACAGAACATTTTCGATGTGGAATTTCAACAAGGAAGATCATCCTTTCAATCGCAACCATTTACAGGTTCCATTGAAGATAGCAATTTAAAGATGGAGATGTGA

Protein Analysis

431

Amino Acids

47.25

Weight (kDa)

5.59

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 727
AccII CGCG 2 cut(s) 41, 697
AciI CCGC 5 cut(s) 168, 245, 392, 697, 962
AclWI GGATC 1 cut(s) 1114
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 1 cut(s) 1211
AcuI CTGAAG 3 cut(s) 203, 975, 1001
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 2 cut(s) 70, 789
AfeI AGCGCT 1 cut(s) 1108
AfiI CCNNNNNNNGG 5 cut(s) 273, 727, 980, 1168, 1253
AflIII ACRYGT 1 cut(s) 956
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 9 cut(s) 11, 178, 387, 445, 450, 471, 656, 726, 893
AluI AGCT 9 cut(s) 11, 178, 387, 445, 450, 471, 656, 726, 893
Alw26I GTCTC 2 cut(s) 441, 858
AlwI GGATC 1 cut(s) 1114
Ama87I CYCGRG 2 cut(s) 17, 259
Aor51HI AGCGCT 1 cut(s) 1108
AoxI GGCC 4 cut(s) 99, 708, 816, 963
ApaI GGGCCC 1 cut(s) 103
ApeKI GCWGC 9 cut(s) 115, 142, 145, 387, 512, 515, 518, 521, 893
ApoI RAATTY 1 cut(s) 1211
ArsI GACNNNNNNTTYG 2 cut(s) 917, 949
Asp700I GAANNNNTTC 2 cut(s) 1131, 1199
AspLEI GCGC 3 cut(s) 43, 697, 1109
AspS9I GGNCC 2 cut(s) 99, 100
AsuC2I CCSGG 4 cut(s) 45, 103, 242, 792
AsuHPI GGTGA 3 cut(s) 259, 641, 751
AsuII TTCGAA 1 cut(s) 1093
AvaI CYCGRG 2 cut(s) 17, 259
BaeGI GKGCMC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 103
BbsI GAAGAC 2 cut(s) 419, 981
BbvI GCAGC 9 cut(s) 127, 154, 157, 374, 499, 502, 505, 508, 880
BccI CCATC 4 cut(s) 135, 340, 973, 1276
BceAI ACGGC 1 cut(s) 1185
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 4 cut(s) 45, 103, 242, 792
BcoDI GTCTC 2 cut(s) 441, 858
BfaI CTAG 1 cut(s) 890
BfmI CTRYAG 2 cut(s) 399, 522
BfoI RGCGCY 1 cut(s) 1110
BlpI GCTNAGC 1 cut(s) 446
Bme1390I CCNGG 5 cut(s) 45, 103, 242, 376, 792
BmeT110I CYCGRG 2 cut(s) 17, 259
BmgT120I GGNCC 2 cut(s) 99, 100
BmiI GGNNCC 2 cut(s) 101, 1258
BmrFI CCNGG 5 cut(s) 45, 103, 242, 376, 792
BmsI GCATC 1 cut(s) 1171
BpiI GAAGAC 2 cut(s) 419, 981
BpmI CTGGAG 2 cut(s) 107, 358
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 1093
BpuMI CCSGG 4 cut(s) 45, 103, 242, 792
BsaAI YACGTR 1 cut(s) 957
BsaHI GRCGYC 1 cut(s) 416
BsaJI CCNNGG 4 cut(s) 44, 711, 791, 905
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 5 cut(s) 273, 727, 980, 1168, 1253
Bse118I RCCGGY 2 cut(s) 454, 818
Bse1I ACTGG 1 cut(s) 814
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 4 cut(s) 44, 711, 791, 905
BseGI GGATG 7 cut(s) 111, 351, 681, 990, 1142, 1186, 1229
BseLI CCNNNNNNNGG 5 cut(s) 273, 727, 980, 1168, 1253
BseMII CTCAG 4 cut(s) 221, 224, 651, 723
BseNI ACTGG 1 cut(s) 814
BseRI GAGGAG 1 cut(s) 757
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 9 cut(s) 127, 154, 157, 374, 499, 502, 505, 508, 880
BsgI GTGCAG 2 cut(s) 518, 582
Bsh1236I CGCG 2 cut(s) 41, 697
BshFI GGCC 4 cut(s) 101, 710, 818, 965
BsiHKCI CYCGRG 2 cut(s) 17, 259
BsiSI CCGG 8 cut(s) 44, 60, 103, 241, 420, 455, 791, 819
BslFI GGGAC 2 cut(s) 61, 587
BslI CCNNNNNNNGG 5 cut(s) 273, 727, 980, 1168, 1253
BsmAI GTCTC 2 cut(s) 441, 858
BsmFI GGGAC 2 cut(s) 61, 587
BsnI GGCC 4 cut(s) 101, 710, 818, 965
BsoBI CYCGRG 2 cut(s) 17, 259
Bsp119I TTCGAA 1 cut(s) 1093
Bsp120I GGGCCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
Bsp1720I GCTNAGC 1 cut(s) 446
BspACI CCGC 5 cut(s) 168, 245, 392, 697, 962
BspANI GGCC 4 cut(s) 101, 710, 818, 965
BspCNI CTCAG 4 cut(s) 222, 223, 652, 724
BspFNI CGCG 2 cut(s) 41, 697
BspHI TCATGA 2 cut(s) 130, 312
BspLI GGNNCC 2 cut(s) 101, 1258
BspMAI CTGCAG 1 cut(s) 526
BspPI GGATC 1 cut(s) 1114
BspT104I TTCGAA 1 cut(s) 1093
BsrFI RCCGGY 2 cut(s) 454, 818
BsrI ACTGG 1 cut(s) 814
BssAI RCCGGY 2 cut(s) 454, 818
BssECI CCNNGG 4 cut(s) 44, 711, 791, 905
BssMI GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
BssNI GRCGYC 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 5 cut(s) 32, 68, 82, 400, 430
Bst6I CTCTTC 2 cut(s) 473, 861
BstACI GRCGYC 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 957
BstBI TTCGAA 1 cut(s) 1093
BstC8I GCNNGC 6 cut(s) 176, 392, 452, 456, 820, 824
BstDEI CTNAG 6 cut(s) 179, 210, 230, 446, 660, 732
BstDSI CCRYGG 1 cut(s) 711
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 7 cut(s) 111, 351, 681, 990, 1142, 1186, 1229
BstFNI CGCG 2 cut(s) 41, 697
BstH2I RGCGCY 1 cut(s) 1110
BstHHI GCGC 3 cut(s) 43, 697, 1109
BstKTI GATC 7 cut(s) 136, 504, 585, 756, 807, 1122, 1229
BstMAI GTCTC 2 cut(s) 441, 858
BstMBI GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
BstMWI GCNNNNNNNGC 5 cut(s) 91, 451, 518, 521, 819
BstNI CCWGG 1 cut(s) 376
BstNSI RCATGY 1 cut(s) 826
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 5 cut(s) 43, 101, 240, 374, 790
BstSFI CTRYAG 2 cut(s) 399, 522
BstSLI GKGCMC 1 cut(s) 103
BstUI CGCG 2 cut(s) 41, 697
BstV1I GCAGC 9 cut(s) 127, 154, 157, 374, 499, 502, 505, 508, 880
BstV2I GAAGAC 2 cut(s) 419, 981
BstXI CCANNNNNNTGG 1 cut(s) 1084
BsuRI GGCC 4 cut(s) 101, 710, 818, 965
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 7 cut(s) 111, 351, 681, 990, 1142, 1186, 1229
BtsIMutI CAGTG 4 cut(s) 396, 763, 807, 1077
Cac8I GCNNGC 6 cut(s) 176, 392, 452, 456, 820, 824
CciI TCATGA 2 cut(s) 130, 312
CfoI GCGC 3 cut(s) 43, 697, 1109
Cfr10I RCCGGY 2 cut(s) 454, 818
Cfr13I GGNCC 2 cut(s) 99, 100
Csp6I GTAC 2 cut(s) 69, 788
CviAII CATG 6 cut(s) 76, 131, 206, 313, 686, 823
CviQI GTAC 2 cut(s) 69, 788
DdeI CTNAG 6 cut(s) 179, 210, 230, 446, 660, 732
DpnI GATC 7 cut(s) 135, 503, 584, 755, 806, 1121, 1228
DpnII GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
DraI TTTAAA 1 cut(s) 1278
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 2 cut(s) 473, 861
EarI CTCTTC 2 cut(s) 473, 861
Eco24I GRGCYC 1 cut(s) 103
Eco47III AGCGCT 1 cut(s) 1108
Eco57I CTGAAG 3 cut(s) 203, 975, 1001
Eco88I CYCGRG 2 cut(s) 17, 259
Eco91I GGTNACC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 99
EcoO65I GGTNACC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 374
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 6 cut(s) 79, 134, 209, 316, 689, 826
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 2 cut(s) 61, 587
FatI CATG 6 cut(s) 75, 130, 205, 312, 685, 822
FauI CCCGC 2 cut(s) 161, 399
FbaI TGATCA 1 cut(s) 133
FokI GGATG 7 cut(s) 118, 358, 668, 997, 1129, 1193, 1216
FriOI GRGCYC 1 cut(s) 103
FspBI CTAG 1 cut(s) 890
GlaI GCGC 3 cut(s) 42, 696, 1108
GsuI CTGGAG 2 cut(s) 107, 358
HaeII RGCGCY 1 cut(s) 1110
HaeIII GGCC 4 cut(s) 101, 710, 818, 965
HapII CCGG 8 cut(s) 44, 60, 103, 241, 420, 455, 791, 819
HhaI GCGC 3 cut(s) 43, 697, 1109
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 6 cut(s) 79, 134, 209, 316, 689, 826
Hin6I GCGC 3 cut(s) 41, 695, 1107
HinP1I GCGC 3 cut(s) 41, 695, 1107
HindIII AAGCTT 3 cut(s) 443, 469, 654
HinfI GANTC 6 cut(s) 151, 575, 620, 901, 1024, 1073
HpaII CCGG 8 cut(s) 44, 60, 103, 241, 420, 455, 791, 819
HphI GGTGA 3 cut(s) 259, 641, 751
Hpy188I TCNGA 7 cut(s) 231, 268, 661, 906, 975, 994, 1113
Hpy188III TCNNGA 3 cut(s) 131, 313, 1136
Hpy99I CGWCG 3 cut(s) 617, 929, 979
HpyAV CCTTC 3 cut(s) 206, 335, 478
HpyCH4III ACNGT 5 cut(s) 32, 68, 82, 400, 430
HpyCH4IV ACGT 2 cut(s) 416, 956
HpyCH4V TGCA 7 cut(s) 499, 524, 563, 778, 798, 938, 1033
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 451, 518, 521, 819
HpyF3I CTNAG 6 cut(s) 179, 210, 230, 446, 660, 732
HpySE526I ACGT 2 cut(s) 416, 956
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 6 cut(s) 79, 134, 209, 316, 689, 826
HspAI GCGC 3 cut(s) 41, 695, 1107
KroI GCCGGC 2 cut(s) 454, 818
KroNI GCCGGC 2 cut(s) 456, 820
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
LmnI GCTCC 1 cut(s) 1114
Lsp1109I GCAGC 9 cut(s) 127, 154, 157, 374, 499, 502, 505, 508, 880
LweI GCATC 1 cut(s) 1171
MaeI CTAG 1 cut(s) 890
MaeII ACGT 2 cut(s) 416, 956
MaeIII GTNAC 2 cut(s) 122, 236
MalI GATC 7 cut(s) 135, 503, 584, 755, 806, 1121, 1228
MboI GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
MfeI CAATTG 1 cut(s) 1037
MhlI GDGCHC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 2 cut(s) 998, 1038
MnlI CCTC 9 cut(s) 84, 90, 474, 655, 695, 729, 735, 738, 900
MroNI GCCGGC 2 cut(s) 454, 818
MroXI GAANNNNTTC 2 cut(s) 1131, 1199
MseI TTAA 2 cut(s) 474, 1277
MslI CAYNNNNRTG 2 cut(s) 80, 690
MspI CCGG 8 cut(s) 44, 60, 103, 241, 420, 455, 791, 819
MspR9I CCNGG 5 cut(s) 45, 103, 242, 376, 792
MunI CAATTG 1 cut(s) 1037
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 2 cut(s) 41, 697
MwoI GCNNNNNNNGC 5 cut(s) 91, 451, 518, 521, 819
NaeI GCCGGC 2 cut(s) 456, 820
NciI CCSGG 4 cut(s) 45, 103, 242, 792
NdeII GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
NgoMIV GCCGGC 2 cut(s) 454, 818
NlaIII CATG 6 cut(s) 79, 134, 209, 316, 689, 826
NlaIV GGNNCC 2 cut(s) 101, 1258
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 1 cut(s) 826
NspV TTCGAA 1 cut(s) 1093
PaeI GCATGC 1 cut(s) 826
PagI TCATGA 2 cut(s) 130, 312
PdiI GCCGGC 2 cut(s) 456, 820
PdmI GAANNNNTTC 2 cut(s) 1131, 1199
PfeI GAWTC 5 cut(s) 151, 620, 901, 1024, 1073
PflMI CCANNNNNTGG 1 cut(s) 727
PfoI TCCNGGA 1 cut(s) 374
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
Ppu21I YACGTR 1 cut(s) 957
Psp6I CCWGG 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 236
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 101, 1258
PspOMI GGGCCC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 99, 100
PstI CTGCAG 1 cut(s) 526
RsaI GTAC 2 cut(s) 70, 789
RsaNI GTAC 2 cut(s) 69, 788
RseI CAYNNNNRTG 2 cut(s) 80, 690
SaqAI TTAA 2 cut(s) 474, 1277
Sau3AI GATC 7 cut(s) 133, 501, 582, 753, 804, 1119, 1226
Sau96I GGNCC 2 cut(s) 99, 100
SchI GAGTC 1 cut(s) 569
ScrFI CCNGG 5 cut(s) 45, 103, 242, 376, 792
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 1 cut(s) 1171
SfcI CTRYAG 2 cut(s) 399, 522
SfuI TTCGAA 1 cut(s) 1093
SmiMI CAYNNNNRTG 2 cut(s) 80, 690
SphI GCATGC 1 cut(s) 826
SsiI CCGC 5 cut(s) 168, 245, 392, 697, 962
SspMI CTAG 1 cut(s) 890
StyD4I CCNGG 5 cut(s) 43, 101, 240, 374, 790
TaaI ACNGT 5 cut(s) 32, 68, 82, 400, 430
TaiI ACGT 2 cut(s) 419, 959
TaqI TCGA 4 cut(s) 924, 1093, 1118, 1203
TauI GCSGC 2 cut(s) 700, 965
TfiI GAWTC 5 cut(s) 151, 620, 901, 1024, 1073
Tru1I TTAA 2 cut(s) 474, 1277
Tru9I TTAA 2 cut(s) 474, 1277
TscAI CASTG 4 cut(s) 403, 763, 814, 1084
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 9 cut(s) 115, 142, 145, 387, 512, 515, 518, 521, 893
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 9 cut(s) 17, 50, 122, 194, 329, 782, 846, 899, 1035
TspGWI ACGGA 3 cut(s) 630, 680, 728
TspRI CASTG 4 cut(s) 403, 763, 814, 1084
Van91I CCANNNNNTGG 1 cut(s) 727
XapI RAATTY 1 cut(s) 1211
XceI RCATGY 1 cut(s) 826
XmnI GAANNNNTTC 2 cut(s) 1131, 1199
XspI CTAG 1 cut(s) 890
ZraI GACGTC 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.