Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G34530 |
| fragaria_vesca | FvH4_2g09030 FvH4_2g09030 |
| malus_domestica | MD05G1065100.v1.1 MD10G1074000.v1.1 |
| prunus_persica | Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 Prupe.8G095700_v2.0.a1 |
| pyrus_communis | pycom05g05640 pycom10g05820 |
| rosa_chinensis | RchiOBHm_Chr6g0264701 |
| rosa_laevigata | RLG00000014234 |
| rosa_multiflora | Rmu_sc0000546.1_g000026 |
| rosa_roxburghii | Rroxscaffold_175G00432010 Rroxscaffold_7G00203210 |
| rosa_rugosa | Rorug06G0014800 |
| rosa_samantha | Rh6AG134300 Rh6BG132000 Rh6CG130600 Rh6DG117600 |
| rosa_wichuraiana | Rw6G011640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 419 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 727 |
| AccII | CGCG | 2 cut(s) | 41, 697 |
| AciI | CCGC | 5 cut(s) | 168, 245, 392, 697, 962 |
| AclWI | GGATC | 1 cut(s) | 1114 |
| AcoI | YGGCCR | 1 cut(s) | 963 |
| AcsI | RAATTY | 1 cut(s) | 1211 |
| AcuI | CTGAAG | 3 cut(s) | 203, 975, 1001 |
| AcyI | GRCGYC | 1 cut(s) | 416 |
| AfaI | GTAC | 2 cut(s) | 70, 789 |
| AfeI | AGCGCT | 1 cut(s) | 1108 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 273, 727, 980, 1168, 1253 |
| AflIII | ACRYGT | 1 cut(s) | 956 |
| AjnI | CCWGG | 1 cut(s) | 374 |
| AluBI | AGCT | 9 cut(s) | 11, 178, 387, 445, 450, 471, 656, 726, 893 |
| AluI | AGCT | 9 cut(s) | 11, 178, 387, 445, 450, 471, 656, 726, 893 |
| Alw26I | GTCTC | 2 cut(s) | 441, 858 |
| AlwI | GGATC | 1 cut(s) | 1114 |
| Ama87I | CYCGRG | 2 cut(s) | 17, 259 |
| Aor51HI | AGCGCT | 1 cut(s) | 1108 |
| AoxI | GGCC | 4 cut(s) | 99, 708, 816, 963 |
| ApaI | GGGCCC | 1 cut(s) | 103 |
| ApeKI | GCWGC | 9 cut(s) | 115, 142, 145, 387, 512, 515, 518, 521, 893 |
| ApoI | RAATTY | 1 cut(s) | 1211 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 917, 949 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1131, 1199 |
| AspLEI | GCGC | 3 cut(s) | 43, 697, 1109 |
| AspS9I | GGNCC | 2 cut(s) | 99, 100 |
| AsuC2I | CCSGG | 4 cut(s) | 45, 103, 242, 792 |
| AsuHPI | GGTGA | 3 cut(s) | 259, 641, 751 |
| AsuII | TTCGAA | 1 cut(s) | 1093 |
| AvaI | CYCGRG | 2 cut(s) | 17, 259 |
| BaeGI | GKGCMC | 1 cut(s) | 103 |
| BanII | GRGCYC | 1 cut(s) | 103 |
| BbsI | GAAGAC | 2 cut(s) | 419, 981 |
| BbvI | GCAGC | 9 cut(s) | 127, 154, 157, 374, 499, 502, 505, 508, 880 |
| BccI | CCATC | 4 cut(s) | 135, 340, 973, 1276 |
| BceAI | ACGGC | 1 cut(s) | 1185 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 917, 951 |
| BciT130I | CCWGG | 1 cut(s) | 376 |
| BclI | TGATCA | 1 cut(s) | 133 |
| BcnI | CCSGG | 4 cut(s) | 45, 103, 242, 792 |
| BcoDI | GTCTC | 2 cut(s) | 441, 858 |
| BfaI | CTAG | 1 cut(s) | 890 |
| BfmI | CTRYAG | 2 cut(s) | 399, 522 |
| BfoI | RGCGCY | 1 cut(s) | 1110 |
| BlpI | GCTNAGC | 1 cut(s) | 446 |
| Bme1390I | CCNGG | 5 cut(s) | 45, 103, 242, 376, 792 |
| BmeT110I | CYCGRG | 2 cut(s) | 17, 259 |
| BmgT120I | GGNCC | 2 cut(s) | 99, 100 |
| BmiI | GGNNCC | 2 cut(s) | 101, 1258 |
| BmrFI | CCNGG | 5 cut(s) | 45, 103, 242, 376, 792 |
| BmsI | GCATC | 1 cut(s) | 1171 |
| BpiI | GAAGAC | 2 cut(s) | 419, 981 |
| BpmI | CTGGAG | 2 cut(s) | 107, 358 |
| Bpu10I | CCTNAGC | 1 cut(s) | 210 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 446 |
| Bpu14I | TTCGAA | 1 cut(s) | 1093 |
| BpuMI | CCSGG | 4 cut(s) | 45, 103, 242, 792 |
| BsaAI | YACGTR | 1 cut(s) | 957 |
| BsaHI | GRCGYC | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 4 cut(s) | 44, 711, 791, 905 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 356, 386 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 273, 727, 980, 1168, 1253 |
| Bse118I | RCCGGY | 2 cut(s) | 454, 818 |
| Bse1I | ACTGG | 1 cut(s) | 814 |
| BseBI | CCWGG | 1 cut(s) | 376 |
| BseDI | CCNNGG | 4 cut(s) | 44, 711, 791, 905 |
| BseGI | GGATG | 7 cut(s) | 111, 351, 681, 990, 1142, 1186, 1229 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 273, 727, 980, 1168, 1253 |
| BseMII | CTCAG | 4 cut(s) | 221, 224, 651, 723 |
| BseNI | ACTGG | 1 cut(s) | 814 |
| BseRI | GAGGAG | 1 cut(s) | 757 |
| BseSI | GKGCMC | 1 cut(s) | 103 |
| BseXI | GCAGC | 9 cut(s) | 127, 154, 157, 374, 499, 502, 505, 508, 880 |
| BsgI | GTGCAG | 2 cut(s) | 518, 582 |
| Bsh1236I | CGCG | 2 cut(s) | 41, 697 |
| BshFI | GGCC | 4 cut(s) | 101, 710, 818, 965 |
| BsiHKCI | CYCGRG | 2 cut(s) | 17, 259 |
| BsiSI | CCGG | 8 cut(s) | 44, 60, 103, 241, 420, 455, 791, 819 |
| BslFI | GGGAC | 2 cut(s) | 61, 587 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 273, 727, 980, 1168, 1253 |
| BsmAI | GTCTC | 2 cut(s) | 441, 858 |
| BsmFI | GGGAC | 2 cut(s) | 61, 587 |
| BsnI | GGCC | 4 cut(s) | 101, 710, 818, 965 |
| BsoBI | CYCGRG | 2 cut(s) | 17, 259 |
| Bsp119I | TTCGAA | 1 cut(s) | 1093 |
| Bsp120I | GGGCCC | 1 cut(s) | 99 |
| Bsp1286I | GDGCHC | 1 cut(s) | 103 |
| Bsp143I | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 446 |
| BspACI | CCGC | 5 cut(s) | 168, 245, 392, 697, 962 |
| BspANI | GGCC | 4 cut(s) | 101, 710, 818, 965 |
| BspCNI | CTCAG | 4 cut(s) | 222, 223, 652, 724 |
| BspFNI | CGCG | 2 cut(s) | 41, 697 |
| BspHI | TCATGA | 2 cut(s) | 130, 312 |
| BspLI | GGNNCC | 2 cut(s) | 101, 1258 |
| BspMAI | CTGCAG | 1 cut(s) | 526 |
| BspPI | GGATC | 1 cut(s) | 1114 |
| BspT104I | TTCGAA | 1 cut(s) | 1093 |
| BsrFI | RCCGGY | 2 cut(s) | 454, 818 |
| BsrI | ACTGG | 1 cut(s) | 814 |
| BssAI | RCCGGY | 2 cut(s) | 454, 818 |
| BssECI | CCNNGG | 4 cut(s) | 44, 711, 791, 905 |
| BssMI | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| BssNI | GRCGYC | 1 cut(s) | 416 |
| Bst2UI | CCWGG | 1 cut(s) | 376 |
| Bst4CI | ACNGT | 5 cut(s) | 32, 68, 82, 400, 430 |
| Bst6I | CTCTTC | 2 cut(s) | 473, 861 |
| BstACI | GRCGYC | 1 cut(s) | 416 |
| BstBAI | YACGTR | 1 cut(s) | 957 |
| BstBI | TTCGAA | 1 cut(s) | 1093 |
| BstC8I | GCNNGC | 6 cut(s) | 176, 392, 452, 456, 820, 824 |
| BstDEI | CTNAG | 6 cut(s) | 179, 210, 230, 446, 660, 732 |
| BstDSI | CCRYGG | 1 cut(s) | 711 |
| BstEII | GGTNACC | 1 cut(s) | 236 |
| BstF5I | GGATG | 7 cut(s) | 111, 351, 681, 990, 1142, 1186, 1229 |
| BstFNI | CGCG | 2 cut(s) | 41, 697 |
| BstH2I | RGCGCY | 1 cut(s) | 1110 |
| BstHHI | GCGC | 3 cut(s) | 43, 697, 1109 |
| BstKTI | GATC | 7 cut(s) | 136, 504, 585, 756, 807, 1122, 1229 |
| BstMAI | GTCTC | 2 cut(s) | 441, 858 |
| BstMBI | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 91, 451, 518, 521, 819 |
| BstNI | CCWGG | 1 cut(s) | 376 |
| BstNSI | RCATGY | 1 cut(s) | 826 |
| BstPI | GGTNACC | 1 cut(s) | 236 |
| BstSCI | CCNGG | 5 cut(s) | 43, 101, 240, 374, 790 |
| BstSFI | CTRYAG | 2 cut(s) | 399, 522 |
| BstSLI | GKGCMC | 1 cut(s) | 103 |
| BstUI | CGCG | 2 cut(s) | 41, 697 |
| BstV1I | GCAGC | 9 cut(s) | 127, 154, 157, 374, 499, 502, 505, 508, 880 |
| BstV2I | GAAGAC | 2 cut(s) | 419, 981 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1084 |
| BsuRI | GGCC | 4 cut(s) | 101, 710, 818, 965 |
| BtgI | CCRYGG | 1 cut(s) | 711 |
| BtsCI | GGATG | 7 cut(s) | 111, 351, 681, 990, 1142, 1186, 1229 |
| BtsIMutI | CAGTG | 4 cut(s) | 396, 763, 807, 1077 |
| Cac8I | GCNNGC | 6 cut(s) | 176, 392, 452, 456, 820, 824 |
| CciI | TCATGA | 2 cut(s) | 130, 312 |
| CfoI | GCGC | 3 cut(s) | 43, 697, 1109 |
| Cfr10I | RCCGGY | 2 cut(s) | 454, 818 |
| Cfr13I | GGNCC | 2 cut(s) | 99, 100 |
| Csp6I | GTAC | 2 cut(s) | 69, 788 |
| CviAII | CATG | 6 cut(s) | 76, 131, 206, 313, 686, 823 |
| CviQI | GTAC | 2 cut(s) | 69, 788 |
| DdeI | CTNAG | 6 cut(s) | 179, 210, 230, 446, 660, 732 |
| DpnI | GATC | 7 cut(s) | 135, 503, 584, 755, 806, 1121, 1228 |
| DpnII | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| DraI | TTTAAA | 1 cut(s) | 1278 |
| EaeI | YGGCCR | 1 cut(s) | 963 |
| Eam1104I | CTCTTC | 2 cut(s) | 473, 861 |
| EarI | CTCTTC | 2 cut(s) | 473, 861 |
| Eco24I | GRGCYC | 1 cut(s) | 103 |
| Eco47III | AGCGCT | 1 cut(s) | 1108 |
| Eco57I | CTGAAG | 3 cut(s) | 203, 975, 1001 |
| Eco88I | CYCGRG | 2 cut(s) | 17, 259 |
| Eco91I | GGTNACC | 1 cut(s) | 236 |
| EcoO109I | RGGNCCY | 1 cut(s) | 99 |
| EcoO65I | GGTNACC | 1 cut(s) | 236 |
| EcoRII | CCWGG | 1 cut(s) | 374 |
| EcoT38I | GRGCYC | 1 cut(s) | 103 |
| FaeI | CATG | 6 cut(s) | 79, 134, 209, 316, 689, 826 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 434, 466 |
| FaqI | GGGAC | 2 cut(s) | 61, 587 |
| FatI | CATG | 6 cut(s) | 75, 130, 205, 312, 685, 822 |
| FauI | CCCGC | 2 cut(s) | 161, 399 |
| FbaI | TGATCA | 1 cut(s) | 133 |
| FokI | GGATG | 7 cut(s) | 118, 358, 668, 997, 1129, 1193, 1216 |
| FriOI | GRGCYC | 1 cut(s) | 103 |
| FspBI | CTAG | 1 cut(s) | 890 |
| GlaI | GCGC | 3 cut(s) | 42, 696, 1108 |
| GsuI | CTGGAG | 2 cut(s) | 107, 358 |
| HaeII | RGCGCY | 1 cut(s) | 1110 |
| HaeIII | GGCC | 4 cut(s) | 101, 710, 818, 965 |
| HapII | CCGG | 8 cut(s) | 44, 60, 103, 241, 420, 455, 791, 819 |
| HhaI | GCGC | 3 cut(s) | 43, 697, 1109 |
| Hin1I | GRCGYC | 1 cut(s) | 416 |
| Hin1II | CATG | 6 cut(s) | 79, 134, 209, 316, 689, 826 |
| Hin6I | GCGC | 3 cut(s) | 41, 695, 1107 |
| HinP1I | GCGC | 3 cut(s) | 41, 695, 1107 |
| HindIII | AAGCTT | 3 cut(s) | 443, 469, 654 |
| HinfI | GANTC | 6 cut(s) | 151, 575, 620, 901, 1024, 1073 |
| HpaII | CCGG | 8 cut(s) | 44, 60, 103, 241, 420, 455, 791, 819 |
| HphI | GGTGA | 3 cut(s) | 259, 641, 751 |
| Hpy188I | TCNGA | 7 cut(s) | 231, 268, 661, 906, 975, 994, 1113 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 313, 1136 |
| Hpy99I | CGWCG | 3 cut(s) | 617, 929, 979 |
| HpyAV | CCTTC | 3 cut(s) | 206, 335, 478 |
| HpyCH4III | ACNGT | 5 cut(s) | 32, 68, 82, 400, 430 |
| HpyCH4IV | ACGT | 2 cut(s) | 416, 956 |
| HpyCH4V | TGCA | 7 cut(s) | 499, 524, 563, 778, 798, 938, 1033 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 91, 451, 518, 521, 819 |
| HpyF3I | CTNAG | 6 cut(s) | 179, 210, 230, 446, 660, 732 |
| HpySE526I | ACGT | 2 cut(s) | 416, 956 |
| Hsp92I | GRCGYC | 1 cut(s) | 416 |
| Hsp92II | CATG | 6 cut(s) | 79, 134, 209, 316, 689, 826 |
| HspAI | GCGC | 3 cut(s) | 41, 695, 1107 |
| KroI | GCCGGC | 2 cut(s) | 454, 818 |
| KroNI | GCCGGC | 2 cut(s) | 456, 820 |
| Ksp22I | TGATCA | 1 cut(s) | 133 |
| Kzo9I | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| LmnI | GCTCC | 1 cut(s) | 1114 |
| Lsp1109I | GCAGC | 9 cut(s) | 127, 154, 157, 374, 499, 502, 505, 508, 880 |
| LweI | GCATC | 1 cut(s) | 1171 |
| MaeI | CTAG | 1 cut(s) | 890 |
| MaeII | ACGT | 2 cut(s) | 416, 956 |
| MaeIII | GTNAC | 2 cut(s) | 122, 236 |
| MalI | GATC | 7 cut(s) | 135, 503, 584, 755, 806, 1121, 1228 |
| MboI | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| MfeI | CAATTG | 1 cut(s) | 1037 |
| MhlI | GDGCHC | 1 cut(s) | 103 |
| MlyI | GAGTC | 1 cut(s) | 569 |
| MmeI | TCCRAC | 2 cut(s) | 998, 1038 |
| MnlI | CCTC | 9 cut(s) | 84, 90, 474, 655, 695, 729, 735, 738, 900 |
| MroNI | GCCGGC | 2 cut(s) | 454, 818 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1131, 1199 |
| MseI | TTAA | 2 cut(s) | 474, 1277 |
| MslI | CAYNNNNRTG | 2 cut(s) | 80, 690 |
| MspI | CCGG | 8 cut(s) | 44, 60, 103, 241, 420, 455, 791, 819 |
| MspR9I | CCNGG | 5 cut(s) | 45, 103, 242, 376, 792 |
| MunI | CAATTG | 1 cut(s) | 1037 |
| MvaI | CCWGG | 1 cut(s) | 376 |
| MvnI | CGCG | 2 cut(s) | 41, 697 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 91, 451, 518, 521, 819 |
| NaeI | GCCGGC | 2 cut(s) | 456, 820 |
| NciI | CCSGG | 4 cut(s) | 45, 103, 242, 792 |
| NdeII | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| NgoMIV | GCCGGC | 2 cut(s) | 454, 818 |
| NlaIII | CATG | 6 cut(s) | 79, 134, 209, 316, 689, 826 |
| NlaIV | GGNNCC | 2 cut(s) | 101, 1258 |
| NmuCI | GTSAC | 1 cut(s) | 122 |
| NspI | RCATGY | 1 cut(s) | 826 |
| NspV | TTCGAA | 1 cut(s) | 1093 |
| PaeI | GCATGC | 1 cut(s) | 826 |
| PagI | TCATGA | 2 cut(s) | 130, 312 |
| PdiI | GCCGGC | 2 cut(s) | 456, 820 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1131, 1199 |
| PfeI | GAWTC | 5 cut(s) | 151, 620, 901, 1024, 1073 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 727 |
| PfoI | TCCNGGA | 1 cut(s) | 374 |
| PleI | GAGTC | 1 cut(s) | 569 |
| PpsI | GAGTC | 1 cut(s) | 569 |
| Ppu21I | YACGTR | 1 cut(s) | 957 |
| Psp6I | CCWGG | 1 cut(s) | 374 |
| PspEI | GGTNACC | 1 cut(s) | 236 |
| PspGI | CCWGG | 1 cut(s) | 374 |
| PspN4I | GGNNCC | 2 cut(s) | 101, 1258 |
| PspOMI | GGGCCC | 1 cut(s) | 99 |
| PspPI | GGNCC | 2 cut(s) | 99, 100 |
| PstI | CTGCAG | 1 cut(s) | 526 |
| RsaI | GTAC | 2 cut(s) | 70, 789 |
| RsaNI | GTAC | 2 cut(s) | 69, 788 |
| RseI | CAYNNNNRTG | 2 cut(s) | 80, 690 |
| SaqAI | TTAA | 2 cut(s) | 474, 1277 |
| Sau3AI | GATC | 7 cut(s) | 133, 501, 582, 753, 804, 1119, 1226 |
| Sau96I | GGNCC | 2 cut(s) | 99, 100 |
| SchI | GAGTC | 1 cut(s) | 569 |
| ScrFI | CCNGG | 5 cut(s) | 45, 103, 242, 376, 792 |
| SduI | GDGCHC | 1 cut(s) | 103 |
| SfaNI | GCATC | 1 cut(s) | 1171 |
| SfcI | CTRYAG | 2 cut(s) | 399, 522 |
| SfuI | TTCGAA | 1 cut(s) | 1093 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 80, 690 |
| SphI | GCATGC | 1 cut(s) | 826 |
| SsiI | CCGC | 5 cut(s) | 168, 245, 392, 697, 962 |
| SspMI | CTAG | 1 cut(s) | 890 |
| StyD4I | CCNGG | 5 cut(s) | 43, 101, 240, 374, 790 |
| TaaI | ACNGT | 5 cut(s) | 32, 68, 82, 400, 430 |
| TaiI | ACGT | 2 cut(s) | 419, 959 |
| TaqI | TCGA | 4 cut(s) | 924, 1093, 1118, 1203 |
| TauI | GCSGC | 2 cut(s) | 700, 965 |
| TfiI | GAWTC | 5 cut(s) | 151, 620, 901, 1024, 1073 |
| Tru1I | TTAA | 2 cut(s) | 474, 1277 |
| Tru9I | TTAA | 2 cut(s) | 474, 1277 |
| TscAI | CASTG | 4 cut(s) | 403, 763, 814, 1084 |
| TseFI | GTSAC | 1 cut(s) | 122 |
| TseI | GCWGC | 9 cut(s) | 115, 142, 145, 387, 512, 515, 518, 521, 893 |
| Tsp45I | GTSAC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 9 cut(s) | 17, 50, 122, 194, 329, 782, 846, 899, 1035 |
| TspGWI | ACGGA | 3 cut(s) | 630, 680, 728 |
| TspRI | CASTG | 4 cut(s) | 403, 763, 814, 1084 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 727 |
| XapI | RAATTY | 1 cut(s) | 1211 |
| XceI | RCATGY | 1 cut(s) | 826 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1131, 1199 |
| XspI | CTAG | 1 cut(s) | 890 |
| ZraI | GACGTC | 1 cut(s) | 417 |