Rmu_sc0000546.1_g000026

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000546.1
Physical Location & Seq
Forward (+)
122331 .. 124807
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000546.1_g000026.1.cds

Sequence Viewer

Length: 1278 bp
atgaacagagccctgccggagatgttgaactgtatgaacgcgccaggaggcctcgtcgccggaaactgtacggacatgacggtgctggacagacagaggactcggatgaggtggcagcacgaccagttcctgcagcagccgcagcagcagcaccaccaaggctactttggcgggaacgagctcaatggggtgttcaatcacgtgccaattgaggcgagccaggttcagaatttccaggggttgatcgggctcggcggcgacttggggatggggcaggcggtgaaacccgacctgagttcggaaaatgggtggaccgaattgggttatgggtcttgtgggtttgagatgaataatatttccaggactttcagctgcccgcccaaagttgccgccgagactgagagcaacaacgccgtcgcgcctgccaagaatagctcgccggccggcaaggaaagctttaagaaaaggaaagccgataaggcacaaaacaataaggctgtagcagaagatgattcctcggacaaaagaatgaaggggtgtgcagaggagggtgactccaagatcacagaacaaaatagcaccaagaacaacgacagagaatcttctgctgatacttcaaaagagaattcaaaagcttccgaggttcaaaagccggattacattcatgtccgggcgcgccgaggtcaggccactgatagccacagcttggctgagagagtgaggagggaaaaaattagtgaaagaatgaagtatctgcaagatttagtaccagggtgcaacaagatcactggcaaggctggtatgctagacgaaatcatcaattatgttcaatcccttcaacgacaagtagagttcctgtctatgaaactagctgctgttaatccgaggcttgatttcaacatcgacgacttgtttacaaaagagatgtttcctgcaaacatcgccaattttccgacaattggaatgtcatcagaaatgactagttctgcatatcttcagtttaatcacatacaacaattgcttcaatgttcgggattggagaatgggataacttcccctgattcagcgctgcttcgaagaagcatcagtactcctttatcaatccctgaaacatttgttgacacatcctgcttcacgcaagtccaacctcctacaacttgggatgccgatatacaaaaccttttcaatgtggaatttcatcaaggaagaacagcacaatttccgtctcaaccatttacaggttccattgaagctagcaatttaaagatggagatgtga

Protein Analysis

425

Amino Acids

47.11

Weight (kDa)

5.72

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 706
AccII CGCG 3 cut(s) 41, 419, 676
AciI CCGC 6 cut(s) 140, 171, 255, 278, 377, 390
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 3 cut(s) 229, 625, 1193
AcuI CTGAAG 1 cut(s) 980
AcvI CACGTG 1 cut(s) 202
AfaI GTAC 3 cut(s) 70, 768, 1090
AfeI AGCGCT 1 cut(s) 1068
AfiI CCNNNNNNNGG 5 cut(s) 298, 685, 706, 959, 1238
AhlI ACTAGT 1 cut(s) 980
AjnI CCWGG 5 cut(s) 43, 219, 234, 359, 769
AluBI AGCT 8 cut(s) 181, 372, 435, 456, 635, 705, 872, 1253
AluI AGCT 8 cut(s) 181, 372, 435, 456, 635, 705, 872, 1253
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 389, 1230
AlwNI CAGNNNCTG 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 1068
AoxI GGCC 3 cut(s) 49, 441, 687
ApeKI GCWGC 9 cut(s) 115, 133, 136, 142, 145, 148, 372, 872, 1069
ApoI RAATTY 3 cut(s) 229, 625, 1193
AscI GGCGCGCC 1 cut(s) 674
AspLEI GCGC 5 cut(s) 43, 421, 676, 678, 1069
AspS9I GGNCC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 2 cut(s) 292, 563
AsuII TTCGAA 1 cut(s) 1075
AsuNHI GCTAGC 1 cut(s) 1253
AvaII GGWCC 1 cut(s) 312
BanII GRGCYC 3 cut(s) 13, 183, 252
BarI GAAGNNNNNNTAC 2 cut(s) 1072, 1104
BbrPI CACGTG 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 359, 859, 1056
BccI CCATC 2 cut(s) 262, 1261
BceAI ACGGC 1 cut(s) 398
BciT130I CCWGG 5 cut(s) 45, 221, 236, 361, 771
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 2 cut(s) 389, 1230
BcuI ACTAGT 1 cut(s) 980
BfaI CTAG 4 cut(s) 806, 869, 981, 1254
BfmI CTRYAG 2 cut(s) 131, 498
BfoI RGCGCY 1 cut(s) 1070
BglI GCCNNNNNGGC 1 cut(s) 479
BmcAI AGTACT 1 cut(s) 1090
Bme1390I CCNGG 6 cut(s) 45, 221, 236, 361, 671, 771
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmiI GGNNCC 1 cut(s) 1243
BmrFI CCNGG 6 cut(s) 45, 221, 236, 361, 671, 771
BmsI GCATC 2 cut(s) 1092, 1153
BmtI GCTAGC 1 cut(s) 1257
BplI GAGNNNNNCTC 2 cut(s) 539, 571
Bpu14I TTCGAA 1 cut(s) 1075
BpuMI CCSGG 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 7 cut(s) 157, 235, 516, 639, 679, 770, 884
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 685, 706, 959, 1238
Bse118I RCCGGY 2 cut(s) 439, 443
Bse1I ACTGG 2 cut(s) 124, 793
BseBI CCWGG 5 cut(s) 45, 221, 236, 361, 771
BseDI CCNNGG 7 cut(s) 157, 235, 516, 639, 679, 770, 884
BseGI GGATG 4 cut(s) 111, 273, 1124, 1168
BseLI CCNNNNNNNGG 5 cut(s) 298, 685, 706, 959, 1238
BseMII CTCAG 3 cut(s) 284, 390, 702
BseNI ACTGG 2 cut(s) 124, 793
BsePI GCGCGC 1 cut(s) 674
BseRI GAGGAG 2 cut(s) 560, 736
BseX3I CGGCCG 1 cut(s) 441
BseXI GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 359, 859, 1056
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 3 cut(s) 41, 419, 676
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 3 cut(s) 51, 443, 689
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 6 cut(s) 17, 60, 440, 444, 653, 670
BslI CCNNNNNNNGG 5 cut(s) 298, 685, 706, 959, 1238
BsmAI GTCTC 2 cut(s) 389, 1230
BsmBI CGTCTC 1 cut(s) 1230
BsnI GGCC 3 cut(s) 51, 443, 689
Bsp119I TTCGAA 1 cut(s) 1075
Bsp1286I GDGCHC 3 cut(s) 13, 183, 252
Bsp143I GATC 3 cut(s) 243, 561, 783
BspACI CCGC 6 cut(s) 140, 171, 255, 278, 377, 390
BspANI GGCC 3 cut(s) 51, 443, 689
BspCNI CTCAG 3 cut(s) 285, 391, 703
BspFNI CGCG 3 cut(s) 41, 419, 676
BspLI GGNNCC 1 cut(s) 1243
BspMAI CTGCAG 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 1257
BspT104I TTCGAA 1 cut(s) 1075
BsrFI RCCGGY 2 cut(s) 439, 443
BsrI ACTGG 2 cut(s) 124, 793
BssAI RCCGGY 2 cut(s) 439, 443
BssECI CCNNGG 7 cut(s) 157, 235, 516, 639, 679, 770, 884
BssHII GCGCGC 1 cut(s) 674
BssMI GATC 3 cut(s) 243, 561, 783
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 5 cut(s) 45, 221, 236, 361, 771
Bst4CI ACNGT 3 cut(s) 32, 68, 82
BstBAI YACGTR 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 1075
BstC8I GCNNGC 9 cut(s) 217, 276, 377, 423, 437, 441, 445, 676, 1255
BstDEI CTNAG 3 cut(s) 293, 399, 711
BstF5I GGATG 4 cut(s) 111, 273, 1124, 1168
BstFNI CGCG 3 cut(s) 41, 419, 676
BstH2I RGCGCY 1 cut(s) 1070
BstHHI GCGC 5 cut(s) 43, 421, 676, 678, 1069
BstKTI GATC 3 cut(s) 246, 564, 786
BstMAI GTCTC 2 cut(s) 389, 1230
BstMBI GATC 3 cut(s) 243, 561, 783
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 168, 453, 479, 941
BstNI CCWGG 5 cut(s) 45, 221, 236, 361, 771
BstSCI CCNGG 6 cut(s) 43, 219, 234, 359, 669, 769
BstSFI CTRYAG 2 cut(s) 131, 498
BstUI CGCG 3 cut(s) 41, 419, 676
BstV1I GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 359, 859, 1056
BstZI CGGCCG 1 cut(s) 441
BsuRI GGCC 3 cut(s) 51, 443, 689
BtgZI GCGATG 1 cut(s) 925
BtsCI GGATG 4 cut(s) 111, 273, 1124, 1168
BtsIMutI CAGTG 2 cut(s) 690, 786
Cac8I GCNNGC 9 cut(s) 217, 276, 377, 423, 437, 441, 445, 676, 1255
CaiI CAGNNNCTG 1 cut(s) 130
CfoI GCGC 5 cut(s) 43, 421, 676, 678, 1069
Cfr10I RCCGGY 2 cut(s) 439, 443
Cfr13I GGNCC 1 cut(s) 312
Csp6I GTAC 3 cut(s) 69, 767, 1089
CviAII CATG 2 cut(s) 76, 665
CviQI GTAC 3 cut(s) 69, 767, 1089
DdeI CTNAG 3 cut(s) 293, 399, 711
DpnI GATC 3 cut(s) 245, 563, 785
DpnII GATC 3 cut(s) 243, 561, 783
DraI TTTAAA 1 cut(s) 1263
EaeI YGGCCR 1 cut(s) 441
EagI CGGCCG 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 157
Eco147I AGGCCT 1 cut(s) 51
Eco24I GRGCYC 3 cut(s) 13, 183, 252
Eco47I GGWCC 1 cut(s) 312
Eco47III AGCGCT 1 cut(s) 1068
Eco52I CGGCCG 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 980
Eco72I CACGTG 1 cut(s) 202
EcoICRI GAGCTC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 5 cut(s) 43, 219, 234, 359, 769
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 3 cut(s) 13, 183, 252
ErhI CCWWGG 1 cut(s) 157
Esp3I CGTCTC 1 cut(s) 1230
FaeI CATG 2 cut(s) 79, 668
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FatI CATG 2 cut(s) 75, 664
FauI CCCGC 2 cut(s) 164, 384
FokI GGATG 4 cut(s) 118, 280, 1111, 1175
FriOI GRGCYC 3 cut(s) 13, 183, 252
FspBI CTAG 4 cut(s) 806, 869, 981, 1254
GlaI GCGC 5 cut(s) 42, 420, 675, 677, 1068
HaeII RGCGCY 1 cut(s) 1070
HaeIII GGCC 3 cut(s) 51, 443, 689
HapII CCGG 6 cut(s) 17, 60, 440, 444, 653, 670
HhaI GCGC 5 cut(s) 43, 421, 676, 678, 1069
Hin1II CATG 2 cut(s) 79, 668
Hin6I GCGC 5 cut(s) 41, 419, 674, 676, 1067
HinP1I GCGC 5 cut(s) 41, 419, 674, 676, 1067
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HindIII AAGCTT 2 cut(s) 454, 633
HinfI GANTC 5 cut(s) 100, 512, 554, 599, 1061
HpaII CCGG 6 cut(s) 17, 60, 440, 444, 653, 670
HphI GGTGA 2 cut(s) 292, 563
Hpy166II GTNNAC 3 cut(s) 312, 915, 1120
Hpy188I TCNGA 8 cut(s) 105, 228, 301, 520, 640, 885, 954, 973
Hpy188III TCNNGA 1 cut(s) 1032
Hpy8I GTNNAC 3 cut(s) 312, 915, 1120
Hpy99I CGWCG 3 cut(s) 59, 419, 908
HpyAV CCTTC 2 cut(s) 526, 845
HpyCH4III ACNGT 3 cut(s) 32, 68, 82
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 6 cut(s) 133, 542, 757, 777, 935, 989
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 168, 453, 479, 941
HpyF3I CTNAG 3 cut(s) 293, 399, 711
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 2 cut(s) 79, 668
HspAI GCGC 5 cut(s) 41, 419, 674, 676, 1067
KroI GCCGGC 2 cut(s) 439, 443
KroNI GCCGGC 2 cut(s) 441, 445
Kzo9I GATC 3 cut(s) 243, 561, 783
Lsp1109I GCAGC 9 cut(s) 127, 145, 148, 154, 157, 160, 359, 859, 1056
LweI GCATC 2 cut(s) 1092, 1153
MaeI CTAG 4 cut(s) 806, 869, 981, 1254
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 551
MalI GATC 3 cut(s) 245, 563, 785
MboI GATC 3 cut(s) 243, 561, 783
MboII GAAGA 5 cut(s) 518, 594, 986, 1089, 1218
MfeI CAATTG 3 cut(s) 207, 957, 1016
MhlI GDGCHC 3 cut(s) 13, 183, 252
MlyI GAGTC 2 cut(s) 94, 548
MmeI TCCRAC 2 cut(s) 977, 1168
MroNI GCCGGC 2 cut(s) 439, 443
MseI TTAA 4 cut(s) 459, 879, 1002, 1262
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 6 cut(s) 17, 60, 440, 444, 653, 670
MspR9I CCNGG 6 cut(s) 45, 221, 236, 361, 671, 771
MunI CAATTG 3 cut(s) 207, 957, 1016
MvaI CCWGG 5 cut(s) 45, 221, 236, 361, 771
MvnI CGCG 3 cut(s) 41, 419, 676
MwoI GCNNNNNNNGC 8 cut(s) 139, 142, 145, 148, 168, 453, 479, 941
NaeI GCCGGC 2 cut(s) 441, 445
NciI CCSGG 1 cut(s) 671
NdeII GATC 3 cut(s) 243, 561, 783
NgoMIV GCCGGC 2 cut(s) 439, 443
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 2 cut(s) 79, 668
NlaIV GGNNCC 1 cut(s) 1243
NmeAIII GCCGAG 3 cut(s) 231, 418, 704
NmuCI GTSAC 1 cut(s) 551
NspV TTCGAA 1 cut(s) 1075
PalAI GGCGCGCC 1 cut(s) 674
PauI GCGCGC 1 cut(s) 674
PceI AGGCCT 1 cut(s) 51
PdiI GCCGGC 2 cut(s) 441, 445
PfeI GAWTC 3 cut(s) 512, 599, 1061
PflMI CCANNNNNTGG 1 cut(s) 706
PfoI TCCNGGA 1 cut(s) 359
PleI GAGTC 2 cut(s) 94, 548
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
PpsI GAGTC 2 cut(s) 94, 548
Ppu21I YACGTR 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 5 cut(s) 43, 219, 234, 359, 769
PspCI CACGTG 1 cut(s) 202
PspGI CCWGG 5 cut(s) 43, 219, 234, 359, 769
PspN4I GGNNCC 1 cut(s) 1243
PspPI GGNCC 1 cut(s) 312
PstI CTGCAG 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 130
PteI GCGCGC 1 cut(s) 674
PvuII CAGCTG 1 cut(s) 372
RsaI GTAC 3 cut(s) 70, 768, 1090
RsaNI GTAC 3 cut(s) 69, 767, 1089
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 4 cut(s) 459, 879, 1002, 1262
Sau3AI GATC 3 cut(s) 243, 561, 783
Sau96I GGNCC 1 cut(s) 312
ScaI AGTACT 1 cut(s) 1090
SchI GAGTC 2 cut(s) 94, 548
ScrFI CCNGG 6 cut(s) 45, 221, 236, 361, 671, 771
SduI GDGCHC 3 cut(s) 13, 183, 252
SfaNI GCATC 2 cut(s) 1092, 1153
SfcI CTRYAG 2 cut(s) 131, 498
SfuI TTCGAA 1 cut(s) 1075
SgsI GGCGCGCC 1 cut(s) 674
SinI GGWCC 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 80
SpeI ACTAGT 1 cut(s) 980
SseBI AGGCCT 1 cut(s) 51
SsiI CCGC 6 cut(s) 140, 171, 255, 278, 377, 390
SspI AATATT 1 cut(s) 355
SspMI CTAG 4 cut(s) 806, 869, 981, 1254
SstI GAGCTC 1 cut(s) 183
StuI AGGCCT 1 cut(s) 51
StyD4I CCNGG 6 cut(s) 43, 219, 234, 359, 669, 769
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 3 cut(s) 32, 68, 82
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 903, 1075
TaqII GACCGA 1 cut(s) 329
TatI WGTACW 1 cut(s) 1088
TauI GCSGC 3 cut(s) 142, 258, 392
TfiI GAWTC 3 cut(s) 512, 599, 1061
Tru1I TTAA 4 cut(s) 459, 879, 1002, 1262
Tru9I TTAA 4 cut(s) 459, 879, 1002, 1262
TscAI CASTG 2 cut(s) 697, 793
TseFI GTSAC 1 cut(s) 551
TseI GCWGC 9 cut(s) 115, 133, 136, 142, 145, 148, 372, 872, 1069
Tsp45I GTSAC 1 cut(s) 551
TspDTI ATGAA 8 cut(s) 17, 50, 362, 545, 653, 761, 878, 1187
TspGWI ACGGA 2 cut(s) 86, 1212
TspRI CASTG 2 cut(s) 697, 793
Van91I CCANNNNNTGG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 3 cut(s) 229, 625, 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XspI CTAG 4 cut(s) 806, 869, 981, 1254
ZrmI AGTACT 1 cut(s) 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.