AT4G35320

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013073
Physical Location & Seq
Reverse (-)
16805869 .. 16806830
962 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35320.1

Sequence Viewer

Length: 444 bp
ATGAGCTCAATGATGGAGACTCTCCAGATTCGTAAACCCACTTCCCTCCCCGTTTCTCAACGCCCTAATGCAGCAGCCACCGCCGACGATGAGCCTGGTCTCATCCGCCGTCGTCTCTCTTCTCTATCACTCAACCTCTCAAACCAACCAGCAGCGATCGCAGCTAGATTCCCGAGATCCAAATCTGTTTCCGCCATGGGAGAACAAGCAGGAAGCTCTGTGAAAGAATGGTGGGAATGGGGTTGGTCATGGATCCTTTCAAGAAAACCTATATTCATCAGAGATCTTGAGCTTAACAAAGACGAAGCTAAATCGATTGGTTCACAAAACAGAGGAAGTATAATGCACGTTTTCTTCAAACTCCGATCTCAGATCCGTAATTTCATGGGACCTTCTTCAGAAGATTCTCTTCCTCTTTCTTGCAAATACAAGCGTCAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.65

Weight (kDa)

10.5

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 81, 106, 192
AclWI GGATC 4 cut(s) 171, 247, 260, 367
AcuI CTGAAG 1 cut(s) 381
AgsI TTSAA 2 cut(s) 261, 358
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 5 cut(s) 6, 164, 216, 292, 308
AluI AGCT 5 cut(s) 6, 164, 216, 292, 308
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 11, 104, 119
AlwI GGATC 4 cut(s) 171, 247, 260, 367
Ama87I CYCGRG 1 cut(s) 172
ApeKI GCWGC 4 cut(s) 71, 74, 152, 161
AsiSI GCGATCGC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 1 cut(s) 389
BamHI GGATCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 4 cut(s) 83, 86, 164, 173
BccI CCATC 1 cut(s) 7
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 3 cut(s) 11, 104, 119
BfaI CTAG 1 cut(s) 165
BglII AGATCT 1 cut(s) 283
BisI GCNGC 4 cut(s) 72, 75, 153, 162
BlsI GCNGC 4 cut(s) 73, 76, 154, 163
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 389
BmiI GGNNCC 2 cut(s) 254, 390
BmrFI CCNGG 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 181
BseMII CTCAG 1 cut(s) 383
BseXI GCAGC 4 cut(s) 83, 86, 164, 173
Bsh1285I CGRYCG 1 cut(s) 159
BshVI ATCGAT 1 cut(s) 314
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 11, 104, 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 402
Bso31I GGTCTC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 6 cut(s) 156, 176, 252, 283, 365, 372
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 3 cut(s) 81, 106, 192
BspCNI CTCAG 1 cut(s) 382
BspDI ATCGAT 1 cut(s) 314
BspLI GGNNCC 2 cut(s) 254, 390
BspPI GGATC 4 cut(s) 171, 247, 260, 367
BspTNI GGTCTC 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 6 cut(s) 156, 176, 252, 283, 365, 372
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 96
Bst6I CTCTTC 2 cut(s) 124, 414
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 102
BstKTI GATC 6 cut(s) 159, 179, 255, 286, 368, 375
BstMAI GTCTC 3 cut(s) 11, 104, 119
BstMBI GATC 6 cut(s) 156, 176, 252, 283, 365, 372
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 3 cut(s) 80, 158, 161
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 4 cut(s) 83, 86, 164, 173
BstX2I RGATCY 4 cut(s) 176, 252, 283, 372
BstYI RGATCY 4 cut(s) 176, 252, 283, 372
Bsu15I ATCGAT 1 cut(s) 314
BsuTUI ATCGAT 1 cut(s) 314
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 102
Cfr13I GGNCC 1 cut(s) 389
ClaI ATCGAT 1 cut(s) 314
CseI GACGC 1 cut(s) 422
CviAII CATG 3 cut(s) 196, 249, 385
CviJI RGCY 7 cut(s) 6, 77, 94, 164, 216, 292, 308
CviKI_1 RGCY 7 cut(s) 6, 77, 94, 164, 216, 292, 308
DdeI CTNAG 1 cut(s) 369
DpnI GATC 6 cut(s) 158, 178, 254, 285, 367, 374
DpnII GATC 6 cut(s) 156, 176, 252, 283, 365, 372
Eam1104I CTCTTC 2 cut(s) 124, 414
EarI CTCTTC 2 cut(s) 124, 414
EciI GGCGGA 2 cut(s) 95, 181
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 389
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 3 cut(s) 199, 252, 388
FaiI YATR 5 cut(s) 197, 250, 272, 341, 386
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 195, 248, 384
Fnu4HI GCNGC 4 cut(s) 72, 75, 153, 162
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 4 cut(s) 72, 75, 153, 162
FspBI CTAG 1 cut(s) 165
GluI GCNGC 4 cut(s) 72, 75, 153, 162
GsuI CTGGAG 1 cut(s) 8
HgaI GACGC 1 cut(s) 422
Hin1II CATG 3 cut(s) 199, 252, 388
HincII GTYRAC 1 cut(s) 437
HindII GTYRAC 1 cut(s) 437
HinfI GANTC 4 cut(s) 19, 28, 168, 404
Hpy166II GTNNAC 3 cut(s) 35, 323, 437
Hpy188I TCNGA 4 cut(s) 281, 365, 372, 400
Hpy188III TCNNGA 4 cut(s) 25, 172, 261, 287
Hpy8I GTNNAC 3 cut(s) 35, 323, 437
Hpy99I CGWCG 2 cut(s) 89, 114
HpyAV CCTTC 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 3 cut(s) 71, 346, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 158, 161
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 199, 252, 388
Kzo9I GATC 6 cut(s) 156, 176, 252, 283, 365, 372
LpnPI CCDG 5 cut(s) 38, 81, 108, 162, 195
Lsp1109I GCAGC 4 cut(s) 83, 86, 164, 173
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 348
MalI GATC 6 cut(s) 158, 178, 254, 285, 367, 374
MboI GATC 6 cut(s) 156, 176, 252, 283, 365, 372
MboII GAAGA 5 cut(s) 111, 346, 387, 401, 413
MflI RGATCY 4 cut(s) 176, 252, 283, 372
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 56, 146, 326, 423
MseI TTAA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 3 cut(s) 80, 158, 161
NcoI CCATGG 1 cut(s) 195
NdeII GATC 6 cut(s) 156, 176, 252, 283, 365, 372
NlaIII CATG 3 cut(s) 199, 252, 388
NlaIV GGNNCC 2 cut(s) 254, 390
PfeI GAWTC 3 cut(s) 28, 168, 404
PkrI GCNGC 4 cut(s) 73, 76, 154, 163
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PpuMI RGGWCCY 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 254, 390
PspPI GGNCC 1 cut(s) 389
PspPPI RGGWCCY 1 cut(s) 389
PsuI RGATCY 4 cut(s) 176, 252, 283, 372
PvuI CGATCG 1 cut(s) 159
RgaI GCGATCGC 1 cut(s) 159
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 72, 75, 153, 162
Sau3AI GATC 6 cut(s) 156, 176, 252, 283, 365, 372
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 8, 138, 166, 218, 271, 294, 310, 351, 394
SfaAI GCGATCGC 1 cut(s) 159
SgfI GCGATCGC 1 cut(s) 159
SinI GGWCC 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 379
SsiI CCGC 3 cut(s) 81, 106, 192
SspMI CTAG 1 cut(s) 165
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 195
TaiI ACGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 314
TasI AATT 1 cut(s) 379
TfiI GAWTC 3 cut(s) 28, 168, 404
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 4 cut(s) 71, 74, 152, 161
TspDTI ATGAA 2 cut(s) 265, 373
TspGWI ACGGA 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 389
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.