MD05G1140900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013073
Physical Location & Seq
Reverse (-)
27145196 .. 27146220
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1140900.v1.1.491

Sequence Viewer

Length: 450 bp
ATGCCCGCAAATCATTCACTTCCAGTTTCTCAGGAGCAATTAACAGAGCAGCCGGGGCTGCGCAGACGGCTGTCGTCTCTGTCCCTCAAGCTCCAGCCCATCTCCTCCCCTGCAACTTCATGGGCACTAAGCCGGTCGAAGTCGGTTTCCGCCATGGGAGAGTACGCCGGAGGATCCATAAGAAAATGGTGGGTCCAGAGCTGGGCATGGATCATGTCCAGAAAACCCATTTTTGCCCAGGATCTGGAGATGAACGAGGAAGAAACCAAAGTGCTCGGATCCGACAACAGAGGAAGCTGGAGGCATGTGTTCTACAAAGTCCGGTCGGAGCTCAAGAAACTCATGGGATCTGATGTCGGTAGCCTGCCGCAAACTTACAGGTACAATTTTGATGATAGCAGGACCAAAACCAAGAAAAGGGGTGGGGTTGAAAAATTAACGGTGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.98

Weight (kDa)

10.09

Isoelectric Point (pI)

68.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 62
AccB7I CCANNNNNTGG 1 cut(s) 244
AciI CCGC 3 cut(s) 6, 150, 368
AclWI GGATC 7 cut(s) 168, 181, 218, 249, 273, 286, 355
AfaI GTAC 2 cut(s) 164, 383
AfiI CCNNNNNNNGG 3 cut(s) 202, 244, 417
AgsI TTSAA 1 cut(s) 431
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 4 cut(s) 91, 201, 297, 331
AluI AGCT 4 cut(s) 91, 201, 297, 331
Alw21I GWGCWC 2 cut(s) 276, 333
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 7 cut(s) 168, 181, 218, 249, 273, 286, 355
AlwNI CAGNNNCTG 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 49, 58
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 193, 402
AsuC2I CCSGG 1 cut(s) 54
AvaII GGWCC 2 cut(s) 193, 402
BaeGI GKGCMC 1 cut(s) 127
BamHI GGATCC 2 cut(s) 173, 278
BanII GRGCYC 1 cut(s) 333
Bbv12I GWGCWC 2 cut(s) 276, 333
BbvI GCAGC 2 cut(s) 45, 61
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 81
BisI GCNGC 3 cut(s) 50, 59, 368
BlsI GCNGC 3 cut(s) 51, 60, 369
Bme1390I CCNGG 2 cut(s) 54, 239
Bme18I GGWCC 2 cut(s) 193, 402
BmgT120I GGNCC 2 cut(s) 193, 402
BmiI GGNNCC 3 cut(s) 175, 194, 280
BmrFI CCNGG 2 cut(s) 54, 239
BoxI GACNNNNGTC 1 cut(s) 70
BpmI CTGGAG 3 cut(s) 77, 266, 319
BpuEI CTTGAG 2 cut(s) 71, 317
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 3 cut(s) 53, 153, 237
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 244, 417
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 53, 153, 237
BseLI CCNNNNNNNGG 3 cut(s) 202, 244, 417
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 127
BseXI GCAGC 2 cut(s) 45, 61
BseYI CCCAGC 1 cut(s) 201
Bsh1285I CGRYCG 2 cut(s) 137, 326
BsiEI CGRYCG 2 cut(s) 137, 326
BsiHKAI GWGCWC 2 cut(s) 276, 333
BsiSI CCGG 4 cut(s) 53, 133, 168, 322
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 202, 244, 417
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 67
Bsp1286I GDGCHC 3 cut(s) 127, 276, 333
Bsp143I GATC 5 cut(s) 173, 210, 241, 278, 347
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 3 cut(s) 6, 150, 368
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 175, 194, 280
BspPI GGATC 7 cut(s) 168, 181, 218, 249, 273, 286, 355
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 53, 153, 237
BssMI GATC 5 cut(s) 173, 210, 241, 278, 347
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 6, 365
BstDEI CTNAG 2 cut(s) 30, 128
BstDSI CCRYGG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 5 cut(s) 176, 213, 244, 281, 350
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 173, 210, 241, 278, 347
BstMCI CGRYCG 2 cut(s) 137, 326
BstMWI GCNNNNNNNGC 3 cut(s) 55, 58, 67
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 308
BstPAI GACNNNNGTC 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 52, 237
BstSLI GKGCMC 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 45, 61
BstX2I RGATCY 4 cut(s) 173, 241, 278, 347
BstYI RGATCY 4 cut(s) 173, 241, 278, 347
BtgI CCRYGG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 6, 365
CaiI CAGNNNCTG 1 cut(s) 244
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 193, 402
Csp6I GTAC 2 cut(s) 163, 382
CviAII CATG 6 cut(s) 120, 154, 207, 214, 305, 343
CviQI GTAC 2 cut(s) 163, 382
DdeI CTNAG 2 cut(s) 30, 128
DpnI GATC 5 cut(s) 175, 212, 243, 280, 349
DpnII GATC 5 cut(s) 173, 210, 241, 278, 347
EciI GGCGGA 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 2 cut(s) 193, 402
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 153
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 6 cut(s) 123, 157, 210, 217, 308, 346
FaiI YATR 7 cut(s) 121, 155, 179, 208, 215, 306, 344
FaqI GGGAC 1 cut(s) 67
FatI CATG 6 cut(s) 119, 153, 206, 213, 304, 342
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 50, 59, 368
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 3 cut(s) 50, 59, 368
FspI TGCGCA 1 cut(s) 62
GlaI GCGC 1 cut(s) 62
GluI GCNGC 3 cut(s) 50, 59, 368
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 3 cut(s) 77, 266, 319
HapII CCGG 4 cut(s) 53, 133, 168, 322
HhaI GCGC 1 cut(s) 63
Hin1II CATG 6 cut(s) 123, 157, 210, 217, 308, 346
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HpaII CCGG 4 cut(s) 53, 133, 168, 322
Hpy188I TCNGA 5 cut(s) 278, 283, 328, 352, 449
Hpy188III TCNNGA 5 cut(s) 32, 196, 219, 245, 334
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 58, 67
HpyF3I CTNAG 2 cut(s) 30, 128
Hsp92II CATG 6 cut(s) 123, 157, 210, 217, 308, 346
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 173, 210, 241, 278, 347
LmnI GCTCC 3 cut(s) 34, 96, 328
Lsp1109I GCAGC 2 cut(s) 45, 61
MalI GATC 5 cut(s) 175, 212, 243, 280, 349
MboI GATC 5 cut(s) 173, 210, 241, 278, 347
MboII GAAGA 1 cut(s) 272
MflI RGATCY 4 cut(s) 173, 241, 278, 347
MhlI GDGCHC 3 cut(s) 127, 276, 333
MluCI AATT 3 cut(s) 38, 385, 434
MmeI TCCRAC 2 cut(s) 306, 306
MnlI CCTC 6 cut(s) 95, 115, 164, 250, 284, 294
MseI TTAA 2 cut(s) 41, 437
MspI CCGG 4 cut(s) 53, 133, 168, 322
MspR9I CCNGG 2 cut(s) 54, 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 55, 58, 67
NciI CCSGG 1 cut(s) 54
NcoI CCATGG 1 cut(s) 153
NdeII GATC 5 cut(s) 173, 210, 241, 278, 347
NlaIII CATG 6 cut(s) 123, 157, 210, 217, 308, 346
NlaIV GGNNCC 3 cut(s) 175, 194, 280
NsbI TGCGCA 1 cut(s) 62
NspI RCATGY 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 3 cut(s) 51, 60, 369
PshAI GACNNNNGTC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 175, 194, 280
PspPI GGNCC 2 cut(s) 193, 402
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 4 cut(s) 173, 241, 278, 347
RsaI GTAC 2 cut(s) 164, 383
RsaNI GTAC 2 cut(s) 163, 382
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 2 cut(s) 41, 437
SatI GCNGC 3 cut(s) 50, 59, 368
Sau3AI GATC 5 cut(s) 173, 210, 241, 278, 347
Sau96I GGNCC 2 cut(s) 193, 402
ScrFI CCNGG 2 cut(s) 54, 239
SduI GDGCHC 3 cut(s) 127, 276, 333
SetI ASST 5 cut(s) 93, 203, 299, 333, 383
SinI GGWCC 2 cut(s) 193, 402
SmlI CTYRAG 2 cut(s) 86, 332
SmoI CTYRAG 2 cut(s) 86, 332
Sse9I AATT 3 cut(s) 38, 385, 434
SsiI CCGC 3 cut(s) 6, 150, 368
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 52, 237
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 38, 385, 434
TauI GCSGC 1 cut(s) 370
Tru1I TTAA 2 cut(s) 41, 437
Tru9I TTAA 2 cut(s) 41, 437
TseI GCWGC 2 cut(s) 49, 58
TspDTI ATGAA 2 cut(s) 108, 266
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 193, 402
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.