Rw7G017000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013073
Physical Location & Seq
Forward (+)
17613703 .. 17614166
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017000.1

Sequence Viewer

Length: 348 bp
ATGAGCTCCATTGTTCAAAGCCTCCAGAAGAGAATGCCCGCAAACCAGGGCGCCCTACCCGTCTCCCAGGGCTCCGGCCTCGACCAGGCTTCGGCTCTCCGACGAAGGCTCTCGTCCCTCTCCCTCAAGTTCCAGCCCATCTCCTCCCCGGACACCACCTGGGCCCTGCAACGGTCCAAGTCGGTCTCCGCCATGGGCGAAAAGCCCATCTTCGCTCAGGATCTGGAGATGAACGAAGAGGCCGAGCTTCGGAAGATCATGAGCTCCGACAACCTCACCACTCCTCCTCAAACTTATAGGCCGCTGACGAAAAGGATTCGGAAGCCCAAAACACCACAGCCTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.76

Weight (kDa)

10.47

Isoelectric Point (pI)

75.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 3 cut(s) 39, 189, 302
AclWI GGATC 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 4 cut(s) 85, 91, 171, 249
AgsI TTSAA 1 cut(s) 17
AjnI CCWGG 4 cut(s) 45, 66, 84, 158
AluBI AGCT 3 cut(s) 6, 247, 264
AluI AGCT 3 cut(s) 6, 247, 264
Alw21I GWGCWC 2 cut(s) 8, 266
Alw26I GTCTC 2 cut(s) 67, 190
AlwI GGATC 1 cut(s) 228
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 4 cut(s) 76, 162, 240, 299
ApaI GGGCCC 1 cut(s) 166
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 162, 163, 174
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 4 cut(s) 8, 74, 166, 266
Bbv12I GWGCWC 2 cut(s) 8, 266
BccI CCATC 2 cut(s) 146, 215
BciT130I CCWGG 4 cut(s) 47, 68, 86, 160
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 67, 190
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 5 cut(s) 47, 68, 86, 149, 160
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 3 cut(s) 162, 163, 174
BmiI GGNNCC 3 cut(s) 52, 73, 164
BmrFI CCNGG 5 cut(s) 47, 68, 86, 149, 160
BpmI CTGGAG 2 cut(s) 8, 245
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 6 cut(s) 46, 66, 67, 147, 159, 192
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 91, 171, 249
BseBI CCWGG 4 cut(s) 47, 68, 86, 160
BseDI CCNNGG 6 cut(s) 46, 66, 67, 147, 159, 192
BseLI CCNNNNNNNGG 4 cut(s) 85, 91, 171, 249
BseMII CTCAG 1 cut(s) 230
BseRI GAGGAG 3 cut(s) 133, 273, 276
BseSI GKGCMC 1 cut(s) 166
BshFI GGCC 4 cut(s) 78, 164, 242, 301
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 8, 266
BsiSI CCGG 2 cut(s) 75, 149
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 4 cut(s) 85, 91, 171, 249
BsmAI GTCTC 2 cut(s) 67, 190
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 4 cut(s) 78, 164, 242, 301
Bso31I GGTCTC 1 cut(s) 190
Bsp120I GGGCCC 1 cut(s) 162
Bsp1286I GDGCHC 4 cut(s) 8, 74, 166, 266
Bsp143I GATC 2 cut(s) 220, 255
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 39, 189, 302
BspANI GGCC 4 cut(s) 78, 164, 242, 301
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 52, 73, 164
BspPI GGATC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 190
BssECI CCNNGG 6 cut(s) 46, 66, 67, 147, 159, 192
BssMI GATC 2 cut(s) 220, 255
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 4 cut(s) 47, 68, 86, 160
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 23, 231
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 223, 258
BstMAI GTCTC 2 cut(s) 67, 190
BstMBI GATC 2 cut(s) 220, 255
BstNI CCWGG 4 cut(s) 47, 68, 86, 160
BstSCI CCNGG 5 cut(s) 45, 66, 84, 147, 158
BstSLI GKGCMC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 4 cut(s) 78, 164, 242, 301
BtgI CCRYGG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 39
CaiI CAGNNNCTG 1 cut(s) 223
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 162, 163, 174
CviAII CATG 2 cut(s) 193, 259
DdeI CTNAG 1 cut(s) 216
DinI GGCGCC 1 cut(s) 52
DpnI GATC 2 cut(s) 222, 257
DpnII GATC 2 cut(s) 220, 255
Eam1104I CTCTTC 2 cut(s) 23, 231
EarI CTCTTC 2 cut(s) 23, 231
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 2 cut(s) 6, 264
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 4 cut(s) 8, 74, 166, 266
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 174
Eco53kI GAGCTC 2 cut(s) 6, 264
EcoICRI GAGCTC 2 cut(s) 6, 264
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 4 cut(s) 45, 66, 84, 158
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 4 cut(s) 8, 74, 166, 266
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 2 cut(s) 196, 262
FaiI YATR 3 cut(s) 194, 260, 297
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 192, 258
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 302
FriOI GRGCYC 4 cut(s) 8, 74, 166, 266
Fsp4HI GCNGC 1 cut(s) 302
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 302
GsuI CTGGAG 2 cut(s) 8, 245
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 78, 164, 242, 301
HapII CCGG 2 cut(s) 75, 149
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 2 cut(s) 196, 262
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 316
HpaII CCGG 2 cut(s) 75, 149
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 4 cut(s) 101, 252, 268, 321
Hpy188III TCNNGA 4 cut(s) 25, 218, 224, 259
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 2 cut(s) 196, 262
HspAI GCGC 1 cut(s) 51
KasI GGCGCC 1 cut(s) 50
Kzo9I GATC 2 cut(s) 220, 255
LmnI GCTCC 3 cut(s) 11, 77, 269
MalI GATC 2 cut(s) 222, 257
MboI GATC 2 cut(s) 220, 255
MboII GAAGA 4 cut(s) 40, 202, 248, 265
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 4 cut(s) 8, 74, 166, 266
Mly113I GGCGCC 1 cut(s) 51
MmeI TCCRAC 2 cut(s) 124, 291
MnlI CCTC 9 cut(s) 32, 89, 128, 134, 154, 232, 284, 294, 297
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 2 cut(s) 75, 149
MspR9I CCNGG 5 cut(s) 47, 68, 86, 149, 160
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 4 cut(s) 47, 68, 86, 160
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 192
NdeII GATC 2 cut(s) 220, 255
NlaIII CATG 2 cut(s) 196, 262
NlaIV GGNNCC 3 cut(s) 52, 73, 164
NmeAIII GCCGAG 1 cut(s) 268
PagI TCATGA 1 cut(s) 258
PasI CCCWGGG 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 303
PluTI GGCGCC 1 cut(s) 54
Psp124BI GAGCTC 2 cut(s) 8, 266
Psp6I CCWGG 4 cut(s) 45, 66, 84, 158
PspGI CCWGG 4 cut(s) 45, 66, 84, 158
PspN4I GGNNCC 3 cut(s) 52, 73, 164
PspOMI GGGCCC 1 cut(s) 162
PspPI GGNCC 3 cut(s) 162, 163, 174
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 220
SacI GAGCTC 2 cut(s) 8, 266
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 220, 255
Sau96I GGNCC 3 cut(s) 162, 163, 174
ScrFI CCNGG 5 cut(s) 47, 68, 86, 149, 160
SduI GDGCHC 4 cut(s) 8, 74, 166, 266
SetI ASST 5 cut(s) 8, 161, 249, 266, 276
SfoI GGCGCC 1 cut(s) 52
SinI GGWCC 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 3 cut(s) 39, 189, 302
SspDI GGCGCC 1 cut(s) 50
SstI GAGCTC 2 cut(s) 8, 266
StyD4I CCNGG 5 cut(s) 45, 66, 84, 147, 158
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 81
TaqII GACCGA 1 cut(s) 172
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 174
XagI CCTNNNNNAGG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.