Rroxscaffold_7G00187350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013073
Physical Location & Seq
Forward (+)
26758641 .. 26759069
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187350.1

Sequence Viewer

Length: 429 bp
ATGCCCGCAAACCAGGGCGCCTTACCCGTCTCCCAGGGCTCCGGCCTCGACCAGGCTCCTGCTCTCCGGCGAAGGCTGTCGTCCCTCTCCCTCAAGCTCCAGCCCATCTCCTCCCCGGCCACCACCTGGGCCCTGCAGCGGTCCAAGTCCGTCTCCGCCATGGGCGAGTACGCCGGCGGGTCCATTAAGAGATGGTGGGACTGGGGCTGGACTTGGGTCCTCTCCAGAAAACCCATCTTCGCTCAGGATCTGGAGATGAACGAGGAGGAGACCAAGATTCTCGGCTCCGACAACAGAGGCAGCTGGCGACATGTCTTCTTCAAGGTCCGGTCCGAGCTCCGGAAGCTCGTGAGCTCCGACAACGTCACCACTCTTCCTCAAACTTACAGGCCCTACAACTCGTTGAACTACCCCAAGACGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.13

Weight (kDa)

10.23

Isoelectric Point (pI)

63.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 126
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 4 cut(s) 6, 139, 156, 177
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 4 cut(s) 52, 126, 138, 339
AflIII ACRYGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 322, 406
AjnI CCWGG 4 cut(s) 12, 33, 51, 125
AluBI AGCT 5 cut(s) 97, 303, 337, 346, 354
AluI AGCT 5 cut(s) 97, 303, 337, 346, 354
Alw21I GWGCWC 2 cut(s) 339, 356
Alw26I GTCTC 3 cut(s) 34, 157, 263
AlwI GGATC 1 cut(s) 255
AlwNI CAGNNNCTG 1 cut(s) 250
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 4 cut(s) 43, 117, 129, 389
ApaI GGGCCC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 136, 300
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 8 cut(s) 129, 130, 141, 180, 217, 325, 330, 390
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 358
AvaII GGWCC 5 cut(s) 141, 180, 217, 325, 330
BaeGI GKGCMC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 4 cut(s) 41, 133, 339, 356
BauI CACGAG 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 2 cut(s) 339, 356
BbvI GCAGC 2 cut(s) 148, 312
BccI CCATC 3 cut(s) 113, 186, 242
BciT130I CCWGG 4 cut(s) 14, 35, 53, 127
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 3 cut(s) 34, 157, 263
BfmI CTRYAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 21
BisI GCNGC 2 cut(s) 137, 301
BlsI GCNGC 2 cut(s) 138, 302
Bme1390I CCNGG 5 cut(s) 14, 35, 53, 116, 127
Bme18I GGWCC 5 cut(s) 141, 180, 217, 325, 330
BmgT120I GGNCC 8 cut(s) 129, 130, 141, 180, 217, 325, 330, 390
BmiI GGNNCC 7 cut(s) 19, 40, 57, 131, 181, 218, 286
BmrFI CCNGG 5 cut(s) 14, 35, 53, 116, 127
BmrI ACTGGG 1 cut(s) 211
BmuI ACTGGG 1 cut(s) 211
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 307
BpmI CTGGAG 3 cut(s) 83, 208, 272
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 18
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 6 cut(s) 13, 33, 34, 114, 126, 159
BsaWI WCCGGW 2 cut(s) 327, 339
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 126, 138, 339
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 4 cut(s) 14, 35, 53, 127
BseDI CCNNGG 6 cut(s) 13, 33, 34, 114, 126, 159
BseLI CCNNNNNNNGG 4 cut(s) 52, 126, 138, 339
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 3 cut(s) 100, 278, 281
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 2 cut(s) 148, 312
BshFI GGCC 4 cut(s) 45, 119, 131, 391
BshNI GGYRCC 1 cut(s) 17
BsiHKAI GWGCWC 2 cut(s) 339, 356
BsiSI CCGG 6 cut(s) 42, 67, 116, 174, 328, 340
BslFI GGGAC 2 cut(s) 67, 212
BslI CCNNNNNNNGG 4 cut(s) 52, 126, 138, 339
BsmAI GTCTC 3 cut(s) 34, 157, 263
BsmBI CGTCTC 2 cut(s) 34, 157
BsmFI GGGAC 2 cut(s) 67, 212
BsnI GGCC 4 cut(s) 45, 119, 131, 391
Bso31I GGTCTC 1 cut(s) 263
Bsp120I GGGCCC 1 cut(s) 129
Bsp1286I GDGCHC 4 cut(s) 41, 133, 339, 356
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 1 cut(s) 247
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 4 cut(s) 6, 139, 156, 177
BspANI GGCC 4 cut(s) 45, 119, 131, 391
BspCNI CTCAG 1 cut(s) 256
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 7 cut(s) 19, 40, 57, 131, 181, 218, 286
BspMAI CTGCAG 1 cut(s) 138
BspPI GGATC 1 cut(s) 255
BspT107I GGYRCC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 6 cut(s) 13, 33, 34, 114, 126, 159
BssMI GATC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 4 cut(s) 14, 35, 53, 127
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 6, 175, 305
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 50
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 3 cut(s) 34, 157, 263
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNI CCWGG 4 cut(s) 14, 35, 53, 127
BstNSI RCATGY 1 cut(s) 314
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 5 cut(s) 12, 33, 51, 114, 125
BstSFI CTRYAG 1 cut(s) 134
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 2 cut(s) 148, 312
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 4 cut(s) 45, 119, 131, 391
BtgI CCRYGG 1 cut(s) 159
Cac8I GCNNGC 3 cut(s) 6, 175, 305
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 8 cut(s) 129, 130, 141, 180, 217, 325, 330, 390
CpoI CGGWCCG 1 cut(s) 330
Csp6I GTAC 1 cut(s) 169
CspI CGGWCCG 1 cut(s) 330
CviAII CATG 2 cut(s) 160, 311
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 243
DinI GGCGCC 1 cut(s) 19
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 2 cut(s) 337, 354
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 4 cut(s) 41, 133, 339, 356
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 5 cut(s) 141, 180, 217, 325, 330
Eco53kI GAGCTC 2 cut(s) 337, 354
EcoICRI GAGCTC 2 cut(s) 337, 354
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 3 cut(s) 130, 217, 390
EcoRII CCWGG 4 cut(s) 12, 33, 51, 125
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 4 cut(s) 41, 133, 339, 356
EgeI GGCGCC 1 cut(s) 19
EheI GGCGCC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 159
Esp3I CGTCTC 2 cut(s) 34, 157
FaeI CATG 2 cut(s) 163, 314
FaiI YATR 2 cut(s) 161, 312
FaqI GGGAC 2 cut(s) 67, 212
FatI CATG 2 cut(s) 159, 310
FauI CCCGC 2 cut(s) 13, 170
Fnu4HI GCNGC 2 cut(s) 137, 301
FriOI GRGCYC 4 cut(s) 41, 133, 339, 356
Fsp4HI GCNGC 2 cut(s) 137, 301
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 137, 301
GsuI CTGGAG 3 cut(s) 83, 208, 272
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 45, 119, 131, 391
HapII CCGG 6 cut(s) 42, 67, 116, 174, 328, 340
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 2 cut(s) 163, 314
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 1 cut(s) 277
HpaII CCGG 6 cut(s) 42, 67, 116, 174, 328, 340
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 3 cut(s) 289, 334, 358
Hpy188III TCNNGA 5 cut(s) 225, 245, 251, 340, 349
HpyAV CCTTC 1 cut(s) 66
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 163, 314
HspAI GCGC 1 cut(s) 18
KasI GGCGCC 1 cut(s) 17
Kpn2I TCCGGA 1 cut(s) 339
KroI GCCGGC 1 cut(s) 173
KroNI GCCGGC 1 cut(s) 175
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 6 cut(s) 44, 61, 102, 290, 342, 359
Lsp1109I GCAGC 2 cut(s) 148, 312
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 364
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 229, 307, 310, 365
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 4 cut(s) 41, 133, 339, 356
Mly113I GGCGCC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 312, 381
MnlI CCTC 9 cut(s) 56, 95, 101, 121, 230, 256, 259, 290, 387
MreI CGCCGGCG 1 cut(s) 173
MroI TCCGGA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 173
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 2 cut(s) 139, 303
MspI CCGG 6 cut(s) 42, 67, 116, 174, 328, 340
MspR9I CCNGG 5 cut(s) 14, 35, 53, 116, 127
MvaI CCWGG 4 cut(s) 14, 35, 53, 127
MwoI GCNNNNNNNGC 1 cut(s) 343
NaeI GCCGGC 1 cut(s) 175
NarI GGCGCC 1 cut(s) 18
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 159
NdeII GATC 1 cut(s) 247
NgoMIV GCCGGC 1 cut(s) 173
NlaIII CATG 2 cut(s) 163, 314
NlaIV GGNNCC 7 cut(s) 19, 40, 57, 131, 181, 218, 286
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 364
NspI RCATGY 1 cut(s) 314
PasI CCCWGGG 1 cut(s) 34
PciI ACATGT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PdiI GCCGGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 277
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 2 cut(s) 138, 302
PluTI GGCGCC 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 217
PscI ACATGT 1 cut(s) 310
PshAI GACNNNNGTC 1 cut(s) 215
Psp124BI GAGCTC 2 cut(s) 339, 356
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 4 cut(s) 12, 33, 51, 125
PspGI CCWGG 4 cut(s) 12, 33, 51, 125
PspN4I GGNNCC 7 cut(s) 19, 40, 57, 131, 181, 218, 286
PspOMI GGGCCC 1 cut(s) 129
PspPI GGNCC 8 cut(s) 129, 130, 141, 180, 217, 325, 330, 390
PspPPI RGGWCCY 1 cut(s) 217
PstI CTGCAG 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 247
PsyI GACNNNGTC 1 cut(s) 362
PvuII CAGCTG 1 cut(s) 303
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Rsr2I CGGWCCG 1 cut(s) 330
RsrII CGGWCCG 1 cut(s) 330
SacI GAGCTC 2 cut(s) 339, 356
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 137, 301
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 8 cut(s) 129, 130, 141, 180, 217, 325, 330, 390
ScrFI CCNGG 5 cut(s) 14, 35, 53, 116, 127
SduI GDGCHC 4 cut(s) 41, 133, 339, 356
SetI ASST 8 cut(s) 99, 128, 305, 327, 339, 348, 356, 366
SfcI CTRYAG 1 cut(s) 134
SfoI GGCGCC 1 cut(s) 19
SgrAI CRCCGGYG 1 cut(s) 173
SinI GGWCC 5 cut(s) 141, 180, 217, 325, 330
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SsiI CCGC 4 cut(s) 6, 139, 156, 177
SspDI GGCGCC 1 cut(s) 17
SstI GAGCTC 2 cut(s) 339, 356
StyD4I CCNGG 5 cut(s) 12, 33, 51, 114, 125
StyI CCWWGG 1 cut(s) 159
TaiI ACGT 1 cut(s) 366
TaqI TCGA 1 cut(s) 48
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseFI GTSAC 1 cut(s) 364
TseI GCWGC 2 cut(s) 136, 300
Tsp45I GTSAC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 126
VpaK11BI GGWCC 5 cut(s) 141, 180, 217, 325, 330
XagI CCTNNNNNAGG 1 cut(s) 50
XceI RCATGY 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.