FvH4_2g16910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013073
Physical Location & Seq
Reverse (-)
14695246 .. 14696463
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16910.t1

Sequence Viewer

Length: 468 bp
ATGAGCTCCATTGTTCAGAGCCTCCAGAAGAGAATGCCAACCAGCCAGCTGGGCGCCCTACCCGTCTCCCAGGGCGGCTCATCAGGGCTAGACCAGGCACCAGCTCTCCGGCGAAGGCTGTCGTCTCTCTCCCTCAAGCTGCAGCCAATCTCATCCCCGGCGACCACATGGGCCATGCAGAGGTCCAAGTCCGTCTCCGCCATGGGGGAGTACGCCGGCGGGTCCATTAAGAGATGGTGGGACTGGGGCTGGACTTGGGTTCTTTCCAGAAAGCCAATCTTCGCTCAGGATCTGGAGATGAACGAGGAAGAGACCAAGATTCTCGGCTCCGACAACAGAGGCAGCTGGCGACATGTCTTCTTTAAGGTCCGGTCTGAGCTCCGGAAGCTCATGATGACCTCGTCCAACAACGTCACCACTCTTCCTCAAACTTACAGGCCCTACGACTCGTTCAAGACCAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.59

Weight (kDa)

10.5

Isoelectric Point (pI)

70.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 53, 97
AccIII TCCGGA 1 cut(s) 381
AciI CCGC 3 cut(s) 75, 198, 219
AclWI GGATC 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 180, 204
AflIII ACRYGT 1 cut(s) 352
AgsI TTSAA 1 cut(s) 454
AjnI CCWGG 2 cut(s) 69, 93
AluBI AGCT 7 cut(s) 6, 49, 104, 139, 345, 379, 388
AluI AGCT 7 cut(s) 6, 49, 104, 139, 345, 379, 388
Alw21I GWGCWC 2 cut(s) 8, 381
Alw26I GTCTC 4 cut(s) 70, 129, 199, 305
AlwI GGATC 1 cut(s) 297
AlwNI CAGNNNCTG 1 cut(s) 292
Aor13HI TCCGGA 1 cut(s) 381
AoxI GGCC 2 cut(s) 171, 437
ApeKI GCWGC 3 cut(s) 139, 142, 342
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 5 cut(s) 171, 183, 222, 367, 438
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 3 cut(s) 183, 222, 367
BanI GGYRCC 2 cut(s) 53, 97
BanII GRGCYC 2 cut(s) 8, 381
BbsI GAAGAC 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 8, 381
BbvI GCAGC 3 cut(s) 126, 154, 354
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 71, 95
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 4 cut(s) 70, 129, 199, 305
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 4 cut(s) 76, 140, 143, 343
BlsI GCNGC 4 cut(s) 77, 141, 144, 344
Bme1390I CCNGG 3 cut(s) 71, 95, 158
Bme18I GGWCC 3 cut(s) 183, 222, 367
BmgT120I GGNCC 5 cut(s) 171, 183, 222, 367, 438
BmiI GGNNCC 4 cut(s) 55, 99, 223, 328
BmrFI CCNGG 3 cut(s) 71, 95, 158
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 2 cut(s) 8, 314
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 158
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 4 cut(s) 69, 70, 156, 201
BsaWI WCCGGW 2 cut(s) 369, 381
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 204
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 248
BseAI TCCGGA 1 cut(s) 381
BseBI CCWGG 2 cut(s) 71, 95
BseDI CCNNGG 4 cut(s) 69, 70, 156, 201
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 180, 204
BseMII CTCAG 2 cut(s) 299, 366
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 3 cut(s) 126, 154, 354
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 173, 439
BshNI GGYRCC 2 cut(s) 53, 97
BsiHKAI GWGCWC 2 cut(s) 8, 381
BsiSI CCGG 5 cut(s) 109, 158, 216, 370, 382
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 180, 204
BsmAI GTCTC 4 cut(s) 70, 129, 199, 305
BsmBI CGTCTC 3 cut(s) 70, 129, 199
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 2 cut(s) 173, 439
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 8, 381
Bsp13I TCCGGA 1 cut(s) 381
Bsp143I GATC 1 cut(s) 289
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 3 cut(s) 75, 198, 219
BspANI GGCC 2 cut(s) 173, 439
BspCNI CTCAG 2 cut(s) 298, 367
BspEI TCCGGA 1 cut(s) 381
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 4 cut(s) 55, 99, 223, 328
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 2 cut(s) 53, 97
BspTNI GGTCTC 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 4 cut(s) 69, 70, 156, 201
BssMI GATC 1 cut(s) 289
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 2 cut(s) 71, 95
Bst6I CTCTTC 3 cut(s) 23, 303, 426
BstACI GRCGYC 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 47, 217, 347
BstDEI CTNAG 2 cut(s) 285, 375
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 152
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 4 cut(s) 70, 129, 199, 305
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 51, 385
BstNI CCWGG 2 cut(s) 71, 95
BstNSI RCATGY 1 cut(s) 356
BstSCI CCNGG 3 cut(s) 69, 93, 156
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 126, 154, 354
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 2 cut(s) 173, 439
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 152
Cac8I GCNNGC 3 cut(s) 47, 217, 347
CaiI CAGNNNCTG 1 cut(s) 292
CciI TCATGA 1 cut(s) 390
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 5 cut(s) 171, 183, 222, 367, 438
Csp6I GTAC 1 cut(s) 211
CviAII CATG 5 cut(s) 168, 175, 202, 353, 391
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 285, 375
DinI GGCGCC 1 cut(s) 55
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 23, 303, 426
EarI CTCTTC 3 cut(s) 23, 303, 426
EciI GGCGGA 1 cut(s) 187
Ecl136II GAGCTC 2 cut(s) 6, 379
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 2 cut(s) 8, 381
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 3 cut(s) 183, 222, 367
Eco53kI GAGCTC 2 cut(s) 6, 379
EcoICRI GAGCTC 2 cut(s) 6, 379
EcoO109I RGGNCCY 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 69, 93
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 2 cut(s) 8, 381
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 201
Esp3I CGTCTC 3 cut(s) 70, 129, 199
FaeI CATG 5 cut(s) 171, 178, 205, 356, 394
FaiI YATR 5 cut(s) 169, 176, 203, 354, 392
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FaqI GGGAC 1 cut(s) 254
FatI CATG 5 cut(s) 167, 174, 201, 352, 390
FauI CCCGC 1 cut(s) 212
Fnu4HI GCNGC 4 cut(s) 76, 140, 143, 343
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 2 cut(s) 8, 381
Fsp4HI GCNGC 4 cut(s) 76, 140, 143, 343
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 55
GluI GCNGC 4 cut(s) 76, 140, 143, 343
GsaI CCCAGC 1 cut(s) 53
GsuI CTGGAG 2 cut(s) 8, 314
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 2 cut(s) 173, 439
HapII CCGG 5 cut(s) 109, 158, 216, 370, 382
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 5 cut(s) 171, 178, 205, 356, 394
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 2 cut(s) 319, 446
HpaII CCGG 5 cut(s) 109, 158, 216, 370, 382
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 18, 331, 376
Hpy188III TCNNGA 7 cut(s) 25, 267, 287, 293, 382, 391, 454
HpyAV CCTTC 1 cut(s) 108
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 142, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 385
HpyF3I CTNAG 2 cut(s) 285, 375
HpySE526I ACGT 1 cut(s) 411
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 5 cut(s) 171, 178, 205, 356, 394
HspAI GCGC 1 cut(s) 54
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 381
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 3 cut(s) 11, 332, 384
Lsp1109I GCAGC 3 cut(s) 126, 154, 354
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 5 cut(s) 40, 271, 320, 349, 413
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 2 cut(s) 8, 381
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 2 cut(s) 354, 429
MnlI CCTC 7 cut(s) 32, 143, 174, 298, 332, 409, 435
MreI CGCCGGCG 1 cut(s) 215
MroI TCCGGA 1 cut(s) 381
MroNI GCCGGC 1 cut(s) 215
MseI TTAA 2 cut(s) 228, 363
MspA1I CMGCKG 2 cut(s) 49, 345
MspI CCGG 5 cut(s) 109, 158, 216, 370, 382
MspR9I CCNGG 3 cut(s) 71, 95, 158
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 2 cut(s) 71, 95
MwoI GCNNNNNNNGC 2 cut(s) 51, 385
NaeI GCCGGC 1 cut(s) 217
NarI GGCGCC 1 cut(s) 54
NciI CCSGG 1 cut(s) 158
NcoI CCATGG 1 cut(s) 201
NdeII GATC 1 cut(s) 289
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 5 cut(s) 171, 178, 205, 356, 394
NlaIV GGNNCC 4 cut(s) 55, 99, 223, 328
NmeAIII GCCGAG 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 412
NspI RCATGY 1 cut(s) 356
PagI TCATGA 1 cut(s) 390
PasI CCCWGGG 1 cut(s) 70
PciI ACATGT 1 cut(s) 352
PctI GAATGC 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 319
PflFI GACNNNGTC 1 cut(s) 400
PkrI GCNGC 4 cut(s) 77, 141, 144, 344
PleI GAGTC 1 cut(s) 440
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 440
PscI ACATGT 1 cut(s) 352
Psp124BI GAGCTC 2 cut(s) 8, 381
Psp6I CCWGG 2 cut(s) 69, 93
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 2 cut(s) 69, 93
PspN4I GGNNCC 4 cut(s) 55, 99, 223, 328
PspPI GGNCC 5 cut(s) 171, 183, 222, 367, 438
PstI CTGCAG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 292
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 400
PvuII CAGCTG 2 cut(s) 49, 345
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SacI GAGCTC 2 cut(s) 8, 381
SaqAI TTAA 2 cut(s) 228, 363
SatI GCNGC 4 cut(s) 76, 140, 143, 343
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 5 cut(s) 171, 183, 222, 367, 438
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 71, 95, 158
SduI GDGCHC 2 cut(s) 8, 381
SfcI CTRYAG 1 cut(s) 140
SfoI GGCGCC 1 cut(s) 55
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 3 cut(s) 183, 222, 367
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SsiI CCGC 3 cut(s) 75, 198, 219
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 1 cut(s) 89
SstI GAGCTC 2 cut(s) 8, 381
StyD4I CCNGG 3 cut(s) 69, 93, 156
StyI CCWWGG 1 cut(s) 201
TaiI ACGT 1 cut(s) 414
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 228, 363
Tru9I TTAA 2 cut(s) 228, 363
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 3 cut(s) 139, 142, 342
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 400
VpaK11BI GGWCC 3 cut(s) 183, 222, 367
XceI RCATGY 1 cut(s) 356
XspI CTAG 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.