Rorug06G0138300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013073
Physical Location & Seq
Forward (+)
19577699 .. 19581150
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0138300.1

Sequence Viewer

Length: 1422 bp
ATGGGTGTGTTGGGATTAGCTTGTGCTTCTACTTGGTCCATACAAAGGGTAGCTATATTTGTAGTATTGGGTTTGGTTTTGAACTTGGGTGTGGTGTGTAATGGAGGCAAAACAAGCACTTTTGTGAGGCAAATTAACAGAAGTTTGGATATGCCTCTTGACAGTGATGTGTTTAAAGTCCCTCCAGGCTATAATGCACCTCAACAAGTTCATATAACGCAAGGGGACCGTCAAGGGAAGGCTGTGATTGTGTCATGGGTGACTGTAGATGAACCAGGTTCCAGTACCGTGCTTTACTGGAGCACGAATGGGAAGCAAAAGAAGGCTGAGGGAAAAGTTAAAACCTATAAATTCTACAATTACACTTCCGGTTACATTCACCACACCACCATCAAAAAATTAAAGTTCAATACCAAATATTACTATGTCGTTGGAGTCGACCACTCTGAGCGGCAGTTCTGGTTTATGACTCCTCCTGAAGTTGGGCCAGACGTCCCTTACACATTTGGTCTCATAGGGGATCTGGGTCAGACCTTTGATTCAAACAAGACGCTAACTCATTACGAGCTAAATCCACTGAAAGGAGAGACAATTTTATTTGTTGGCGACCTCTCCTATGCGGATGACTACCCAAATCATGATAATGTCAGATGGGATACATGGGGAAGATTCACAGAGCGAAGTGCTGCTTATCAACCTTGGATATGGACTGCAGGGAATCATGAAATTGATTTTGCCCCAGAAATTGGTGAAACCAAACCTTTTAAACCTTACACTCACCGGTATCATGTCCCACATAAAGCATCAGGGAGTACTGCCCCTGTTTGGTACTCAATCAAGAGAGCTTCGTCCTACATCATCGTCTTAGCTTCATATTCAGCATATGGTAAATACACTCCTCAGTACGTATGGCTCGAGCAGGAGCTATCAAAAGTTAATAGAAGTGAGACACCATGGTTGATTGTCTTAATGCATTCCCCATGGTATAATAGCTACAACTATCACTATATGGAAGGAGAAAGCATGAGAGTGATGTTTGAGCCGTGGTTTGTACAGTACAAAGTTGACGTGGTATTTTCTGGTCATGTCCATGCCTATGAACGATCTGAACGCATATCCAATGTTGCATATAACATTACAAATGGTAATTGCATTCCTGTGAAAGATCAATCTGCACCTGTGTACATTACCATTGGGGATGGAGGAAATCTTGAAGGCTTAGCAACCTCCATGACAGAGCCACAGCCAGCGTACTCGGCCTATCGAGAGGCCAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAAGCCATGCTTATTTTAGTTGGCACCGTAATCAAGATGGATATGCTGTAGAAGCTGATTCTATGGTGTTCTTGAATAGATACTTTCATCCTCTTGATGATTCCACAAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

473

Amino Acids

53.94

Weight (kDa)

6.65

Isoelectric Point (pI)

36.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pur_ac_phosph_N PF16656 67 - 157 3.2e-18 Purple acid Phosphatase, N-terminal domain
Metallophos PF00149 168 - 366 1.3e-26 Calcineurin-like phosphoesterase
Metallophos_C PF14008 392 - 451 4.9e-19 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 1329
AccB7I CCANNNNNTGG 1 cut(s) 746
AccBSI CCGCTC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 438
AciI CCGC 2 cut(s) 451, 620
AclWI GGATC 1 cut(s) 528
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 8 cut(s) 286, 814, 830, 905, 1053, 1058, 1184, 1253
AfiI CCNNNNNNNGG 5 cut(s) 45, 482, 581, 746, 825
AgeI ACCGGT 1 cut(s) 780
AgsI TTSAA 5 cut(s) 82, 409, 543, 1214, 1381
AjiI CACGTC 1 cut(s) 1069
AjnI CCWGG 2 cut(s) 184, 274
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 8 cut(s) 20, 53, 568, 845, 869, 925, 993, 1361
AluI AGCT 8 cut(s) 20, 53, 568, 845, 869, 925, 993, 1361
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 515, 581, 941
AlwI GGATC 1 cut(s) 528
Ama87I CYCGRG 1 cut(s) 914
AoxI GGCC 3 cut(s) 485, 1257, 1269
ApeKI GCWGC 1 cut(s) 686
ApoI RAATTY 1 cut(s) 350
AsiGI ACCGGT 1 cut(s) 780
AspS9I GGNCC 3 cut(s) 36, 226, 485
AsuHPI GGTGA 4 cut(s) 271, 371, 761, 770
AvaI CYCGRG 1 cut(s) 914
AvaII GGWCC 2 cut(s) 36, 226
BanI GGYRCC 1 cut(s) 1329
Bbv12I GWGCWC 1 cut(s) 305
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 673
BccI CCATC 4 cut(s) 398, 645, 1193, 1337
BceAI ACGGC 1 cut(s) 1027
BciT130I CCWGG 2 cut(s) 186, 276
BciVI GTATCC 1 cut(s) 649
BcoDI GTCTC 3 cut(s) 515, 581, 941
BfmI CTRYAG 3 cut(s) 264, 711, 1353
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 2 cut(s) 452, 687
BlpI GCTNAGC 1 cut(s) 1219
BlsI GCNGC 2 cut(s) 453, 688
BmcAI AGTACT 1 cut(s) 814
Bme1390I CCNGG 2 cut(s) 186, 276
Bme18I GGWCC 2 cut(s) 36, 226
BmeT110I CYCGRG 1 cut(s) 914
BmgBI CACGTC 1 cut(s) 1069
BmgT120I GGNCC 3 cut(s) 36, 226, 485
BmiI GGNNCC 3 cut(s) 227, 280, 1331
BmrFI CCNGG 2 cut(s) 186, 276
BmsI GCATC 1 cut(s) 812
BpmI CTGGAG 2 cut(s) 168, 319
Bpu10I CCTNAGC 1 cut(s) 327
Bpu1102I GCTNAGC 1 cut(s) 1219
BsaAI YACGTR 1 cut(s) 907
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 698, 953, 980, 1043
BsaWI WCCGGW 2 cut(s) 368, 780
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 482, 581, 746, 825
Bse118I RCCGGY 1 cut(s) 780
Bse1I ACTGG 3 cut(s) 282, 302, 1272
BseBI CCWGG 2 cut(s) 186, 276
BseDI CCNNGG 4 cut(s) 698, 953, 980, 1043
BseGI GGATG 3 cut(s) 628, 1204, 1393
BseLI CCNNNNNNNGG 5 cut(s) 45, 482, 581, 746, 825
BseMII CTCAG 3 cut(s) 318, 438, 914
BseNI ACTGG 3 cut(s) 282, 302, 1272
BseRI GAGGAG 2 cut(s) 462, 888
BseXI GCAGC 1 cut(s) 673
BsgI GTGCAG 1 cut(s) 1158
BshFI GGCC 3 cut(s) 487, 1259, 1271
BshNI GGYRCC 1 cut(s) 1329
BshTI ACCGGT 1 cut(s) 780
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 914
BsiSI CCGG 2 cut(s) 369, 781
BslFI GGGAC 4 cut(s) 164, 239, 479, 776
BslI CCNNNNNNNGG 5 cut(s) 45, 482, 581, 746, 825
BsmAI GTCTC 3 cut(s) 515, 581, 941
BsmFI GGGAC 4 cut(s) 164, 239, 479, 776
BsmI GAATGC 2 cut(s) 973, 1152
BsnI GGCC 3 cut(s) 487, 1259, 1271
Bso31I GGTCTC 1 cut(s) 515
BsoBI CYCGRG 1 cut(s) 914
Bsp1286I GDGCHC 1 cut(s) 305
Bsp1407I TGTACA 2 cut(s) 1051, 1182
Bsp143I GATC 3 cut(s) 520, 1103, 1165
Bsp1720I GCTNAGC 1 cut(s) 1219
Bsp19I CCATGG 2 cut(s) 953, 980
BspACI CCGC 2 cut(s) 451, 620
BspANI GGCC 3 cut(s) 487, 1259, 1271
BspCNI CTCAG 3 cut(s) 319, 439, 913
BspHI TCATGA 2 cut(s) 637, 721
BspLI GGNNCC 3 cut(s) 227, 280, 1331
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 1329
BspTNI GGTCTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 451
BsrFI RCCGGY 1 cut(s) 780
BsrGI TGTACA 2 cut(s) 1051, 1182
BsrI ACTGG 3 cut(s) 282, 302, 1272
BssAI RCCGGY 1 cut(s) 780
BssECI CCNNGG 4 cut(s) 698, 953, 980, 1043
BssMI GATC 3 cut(s) 520, 1103, 1165
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 3 cut(s) 698, 953, 980
Bst2UI CCWGG 2 cut(s) 186, 276
Bst4CI ACNGT 6 cut(s) 164, 230, 265, 289, 1056, 1334
BstACI GRCGYC 1 cut(s) 492
BstAUI TGTACA 2 cut(s) 1051, 1182
BstBAI YACGTR 1 cut(s) 907
BstC8I GCNNGC 1 cut(s) 1248
BstDEI CTNAG 5 cut(s) 327, 447, 865, 900, 1219
BstDSI CCRYGG 3 cut(s) 953, 980, 1043
BstF5I GGATG 3 cut(s) 628, 1204, 1393
BstKTI GATC 3 cut(s) 523, 1106, 1168
BstMAI GTCTC 3 cut(s) 515, 581, 941
BstMBI GATC 3 cut(s) 520, 1103, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 114, 1256, 1358
BstNI CCWGG 2 cut(s) 186, 276
BstSCI CCNGG 2 cut(s) 184, 274
BstSFI CTRYAG 3 cut(s) 264, 711, 1353
BstSNI TACGTA 1 cut(s) 907
BstV1I GCAGC 1 cut(s) 673
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 3 cut(s) 487, 1259, 1271
BtgI CCRYGG 3 cut(s) 953, 980, 1043
BtrI CACGTC 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 628, 1204, 1393
BtsIMutI CAGTG 2 cut(s) 169, 575
Cac8I GCNNGC 1 cut(s) 1248
CciI TCATGA 2 cut(s) 637, 721
Cfr10I RCCGGY 1 cut(s) 780
Cfr13I GGNCC 3 cut(s) 36, 226, 485
CseI GACGC 1 cut(s) 559
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 8 cut(s) 285, 813, 829, 904, 1052, 1057, 1183, 1252
CspAI ACCGGT 1 cut(s) 780
CviQI GTAC 8 cut(s) 285, 813, 829, 904, 1052, 1057, 1183, 1252
DdeI CTNAG 5 cut(s) 327, 447, 865, 900, 1219
DpnI GATC 3 cut(s) 522, 1105, 1167
DpnII GATC 3 cut(s) 520, 1103, 1165
DraI TTTAAA 2 cut(s) 175, 766
Eco105I TACGTA 1 cut(s) 907
Eco130I CCWWGG 3 cut(s) 698, 953, 980
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 2 cut(s) 36, 226
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 914
EcoRII CCWGG 2 cut(s) 184, 274
EcoT14I CCWWGG 3 cut(s) 698, 953, 980
EcoT22I ATGCAT 1 cut(s) 975
ErhI CCWWGG 3 cut(s) 698, 953, 980
FalI AAGNNNNNCTT 4 cut(s) 673, 705, 1300, 1332
FaqI GGGAC 4 cut(s) 164, 239, 479, 776
FauNDI CATATG 1 cut(s) 883
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 452, 687
FokI GGATG 3 cut(s) 635, 1211, 1380
Fsp4HI GCNGC 2 cut(s) 452, 687
GluI GCNGC 2 cut(s) 452, 687
GsuI CTGGAG 2 cut(s) 168, 319
HaeIII GGCC 3 cut(s) 487, 1259, 1271
HapII CCGG 2 cut(s) 369, 781
HgaI GACGC 1 cut(s) 559
Hin1I GRCGYC 1 cut(s) 492
HincII GTYRAC 2 cut(s) 439, 1066
HindII GTYRAC 2 cut(s) 439, 1066
HinfI GANTC 7 cut(s) 435, 469, 539, 669, 718, 1364, 1406
HpaII CCGG 2 cut(s) 369, 781
HphI GGTGA 4 cut(s) 271, 371, 761, 770
Hpy166II GTNNAC 3 cut(s) 439, 1066, 1183
Hpy188I TCNGA 4 cut(s) 448, 531, 650, 1108
Hpy8I GTNNAC 3 cut(s) 439, 1066, 1183
HpyAV CCTTC 4 cut(s) 232, 316, 1007, 1208
HpyCH4III ACNGT 6 cut(s) 164, 230, 265, 289, 1056, 1334
HpyCH4IV ACGT 3 cut(s) 492, 906, 1068
HpyCH4V TGCA 6 cut(s) 197, 713, 973, 1127, 1152, 1175
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 1256, 1358
HpyF3I CTNAG 5 cut(s) 327, 447, 865, 900, 1219
HpySE526I ACGT 3 cut(s) 492, 906, 1068
Hsp92I GRCGYC 1 cut(s) 492
Kzo9I GATC 3 cut(s) 520, 1103, 1165
LmnI GCTCC 2 cut(s) 300, 922
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 1 cut(s) 812
MabI ACCWGGT 1 cut(s) 274
MaeII ACGT 3 cut(s) 492, 906, 1068
MaeIII GTNAC 2 cut(s) 259, 371
MalI GATC 3 cut(s) 522, 1105, 1167
MbiI CCGCTC 1 cut(s) 451
MboI GATC 3 cut(s) 520, 1103, 1165
MboII GAAGA 1 cut(s) 678
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 8 cut(s) 132, 350, 358, 398, 591, 726, 744, 1147
MlyI GAGTC 2 cut(s) 444, 463
MmeI TCCRAC 1 cut(s) 412
Mph1103I ATGCAT 1 cut(s) 975
MseI TTAA 7 cut(s) 135, 174, 339, 401, 765, 936, 968
MslI CAYNNNNRTG 6 cut(s) 122, 642, 1028, 1089, 1095, 1157
MspI CCGG 2 cut(s) 369, 781
MspR9I CCNGG 2 cut(s) 186, 276
Mva1269I GAATGC 2 cut(s) 973, 1152
MvaI CCWGG 2 cut(s) 186, 276
MwoI GCNNNNNNNGC 3 cut(s) 114, 1256, 1358
NcoI CCATGG 2 cut(s) 953, 980
NdeI CATATG 1 cut(s) 883
NdeII GATC 3 cut(s) 520, 1103, 1165
NlaIV GGNNCC 3 cut(s) 227, 280, 1331
NmeAIII GCCGAG 1 cut(s) 1235
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 975
OliI CACNNNNGTG 1 cut(s) 122
PaeR7I CTCGAG 1 cut(s) 914
PagI TCATGA 2 cut(s) 637, 721
PcsI WCGNNNNNNNCGW 2 cut(s) 435, 912
PctI GAATGC 2 cut(s) 973, 1152
PfeI GAWTC 5 cut(s) 539, 669, 718, 1364, 1406
PflMI CCANNNNNTGG 1 cut(s) 746
PinAI ACCGGT 1 cut(s) 780
PkrI GCNGC 2 cut(s) 453, 688
PleI GAGTC 2 cut(s) 443, 463
PpsI GAGTC 2 cut(s) 443, 463
Ppu21I YACGTR 1 cut(s) 907
Psp6I CCWGG 2 cut(s) 184, 274
PspGI CCWGG 2 cut(s) 184, 274
PspN4I GGNNCC 3 cut(s) 227, 280, 1331
PspPI GGNCC 3 cut(s) 36, 226, 485
PspXI VCTCGAGB 1 cut(s) 914
PstI CTGCAG 1 cut(s) 715
PsuI RGATCY 1 cut(s) 520
RsaI GTAC 8 cut(s) 286, 814, 830, 905, 1053, 1058, 1184, 1253
RsaNI GTAC 8 cut(s) 285, 813, 829, 904, 1052, 1057, 1183, 1252
RseI CAYNNNNRTG 6 cut(s) 122, 642, 1028, 1089, 1095, 1157
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 7 cut(s) 135, 174, 339, 401, 765, 936, 968
SatI GCNGC 2 cut(s) 452, 687
Sau3AI GATC 3 cut(s) 520, 1103, 1165
Sau96I GGNCC 3 cut(s) 36, 226, 485
ScaI AGTACT 1 cut(s) 814
SchI GAGTC 2 cut(s) 444, 463
ScrFI CCNGG 2 cut(s) 186, 276
SduI GDGCHC 1 cut(s) 305
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 3 cut(s) 264, 711, 1353
Sfr274I CTCGAG 1 cut(s) 914
SinI GGWCC 2 cut(s) 36, 226
SlaI CTCGAG 1 cut(s) 914
SmiMI CAYNNNNRTG 6 cut(s) 122, 642, 1028, 1089, 1095, 1157
SmlI CTYRAG 1 cut(s) 914
SmoI CTYRAG 1 cut(s) 914
SnaBI TACGTA 1 cut(s) 907
Sse9I AATT 8 cut(s) 132, 350, 358, 398, 591, 726, 744, 1147
SsiI CCGC 2 cut(s) 451, 620
SspI AATATT 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 184, 274
StyI CCWWGG 3 cut(s) 698, 953, 980
TaaI ACNGT 6 cut(s) 164, 230, 265, 289, 1056, 1334
TaiI ACGT 3 cut(s) 495, 909, 1071
TaqI TCGA 3 cut(s) 438, 915, 1264
TasI AATT 8 cut(s) 132, 350, 358, 398, 591, 726, 744, 1147
TatI WGTACW 4 cut(s) 812, 1051, 1056, 1182
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 5 cut(s) 539, 669, 718, 1364, 1406
Tru1I TTAA 7 cut(s) 135, 174, 339, 401, 765, 936, 968
Tru9I TTAA 7 cut(s) 135, 174, 339, 401, 765, 936, 968
TscAI CASTG 2 cut(s) 169, 582
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 686
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 6 cut(s) 200, 285, 738, 861, 1113, 1382
TspRI CASTG 2 cut(s) 169, 582
Van91I CCANNNNNTGG 1 cut(s) 746
VpaK11BI GGWCC 2 cut(s) 36, 226
XapI RAATTY 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 914
XmiI GTMKAC 1 cut(s) 438
ZraI GACGTC 1 cut(s) 493
ZrmI AGTACT 1 cut(s) 814
Zsp2I ATGCAT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.