Rh6BG253400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013073
Physical Location & Seq
Reverse (-)
46572005 .. 46573492
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG253400.1

Sequence Viewer

Length: 462 bp
ATGAGCTCCATTGTTCAGAGCCTCCAGAAGAGAATGCCCACAAACCAGGGCGCCCTACCCGTCTCCCAGGGCTCCGGCCTCGACCAGGCTCCGGCTCTCCGGCGAAGGCTGTCGTCCCTCTCCCTCAAGCTCCAGCCCATCTCCTCCCCGGCCACCACCTGGGCCCTGCAGCGGTCCAAGTCCGTCTCCGCCATGGGCGAGTACGCCGGCGGGTCCATTAAGAGGTGGTGGGACTGGGGCTGGACTTGGGTTCTCTCCAGAAAACCCATCTTCGCTCAGGATCTGGAGATGAACGAGGAGGAGACCAAGATTCTCGGCTCCGACAACAGAGGCAGCTGGCGACATGTCTTCTTCAAGGTCCGGTCCGAGCTCCGGAAGCTCGTGACCTCCGACAACGTCACTACTCTTCCTCAAACTTACAGGCCCTACAACTCGTTTAACTACCCCAAGACGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.46

Weight (kDa)

10.4

Isoelectric Point (pI)

66.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17300 AT4G35320
fragaria_vesca FvH4_2g16910
malus_domestica MD05G1140900.v1.1 MD11G1242200.v1.1
pyrus_communis pycom05g13600 pycom10g12220
rosa_chinensis RchiOBHm_Chr6g0281051
rosa_laevigata RLG00000013001
rosa_multiflora Rmu_sc0012869.1_g000008
rosa_roxburghii Rroxscaffold_7G00187350
rosa_rugosa Rorug06G0093600 Rorug06G0138300
rosa_samantha Rh6BG253400 Rh6CG253300 Rh6DG244900
rosa_wichuraiana Rw6G021740 Rw7G017000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccB7I CCANNNNNTGG 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 372
AciI CCGC 3 cut(s) 172, 189, 210
AclWI GGATC 1 cut(s) 288
AcoI YGGCCR 1 cut(s) 150
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 6 cut(s) 85, 91, 159, 171, 222, 372
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 4 cut(s) 45, 66, 84, 158
AluBI AGCT 5 cut(s) 6, 130, 336, 370, 379
AluI AGCT 5 cut(s) 6, 130, 336, 370, 379
Alw21I GWGCWC 2 cut(s) 8, 372
Alw26I GTCTC 3 cut(s) 67, 190, 296
AlwI GGATC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 283
Aor13HI TCCGGA 1 cut(s) 372
AoxI GGCC 4 cut(s) 76, 150, 162, 422
ApaI GGGCCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 169, 333
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 7 cut(s) 162, 163, 174, 213, 358, 363, 423
AsuC2I CCSGG 1 cut(s) 149
AvaII GGWCC 4 cut(s) 174, 213, 358, 363
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 4 cut(s) 8, 74, 166, 372
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 340
Bbv12I GWGCWC 2 cut(s) 8, 372
BbvI GCAGC 2 cut(s) 181, 345
BccI CCATC 2 cut(s) 146, 275
BciT130I CCWGG 4 cut(s) 47, 68, 86, 160
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 3 cut(s) 67, 190, 296
BfmI CTRYAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 2 cut(s) 170, 334
BlsI GCNGC 2 cut(s) 171, 335
Bme1390I CCNGG 5 cut(s) 47, 68, 86, 149, 160
Bme18I GGWCC 4 cut(s) 174, 213, 358, 363
BmgT120I GGNCC 7 cut(s) 162, 163, 174, 213, 358, 363, 423
BmiI GGNNCC 6 cut(s) 52, 73, 90, 164, 214, 319
BmrFI CCNGG 5 cut(s) 47, 68, 86, 149, 160
BmrI ACTGGG 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 4 cut(s) 8, 116, 241, 305
Bpu10I CCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 6 cut(s) 46, 66, 67, 147, 159, 192
BsaWI WCCGGW 2 cut(s) 360, 372
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 91, 159, 171, 222, 372
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 372
BseBI CCWGG 4 cut(s) 47, 68, 86, 160
BseDI CCNNGG 6 cut(s) 46, 66, 67, 147, 159, 192
BseLI CCNNNNNNNGG 6 cut(s) 85, 91, 159, 171, 222, 372
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 3 cut(s) 133, 311, 314
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 2 cut(s) 181, 345
BshFI GGCC 4 cut(s) 78, 152, 164, 424
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 8, 372
BsiSI CCGG 7 cut(s) 75, 92, 100, 149, 207, 361, 373
BslFI GGGAC 2 cut(s) 100, 245
BslI CCNNNNNNNGG 6 cut(s) 85, 91, 159, 171, 222, 372
BsmAI GTCTC 3 cut(s) 67, 190, 296
BsmBI CGTCTC 2 cut(s) 67, 190
BsmFI GGGAC 2 cut(s) 100, 245
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 4 cut(s) 78, 152, 164, 424
Bso31I GGTCTC 1 cut(s) 296
Bsp120I GGGCCC 1 cut(s) 162
Bsp1286I GDGCHC 4 cut(s) 8, 74, 166, 372
Bsp13I TCCGGA 1 cut(s) 372
Bsp143I GATC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 3 cut(s) 172, 189, 210
BspANI GGCC 4 cut(s) 78, 152, 164, 424
BspCNI CTCAG 1 cut(s) 289
BspEI TCCGGA 1 cut(s) 372
BspLI GGNNCC 6 cut(s) 52, 73, 90, 164, 214, 319
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 6 cut(s) 46, 66, 67, 147, 159, 192
BssMI GATC 1 cut(s) 280
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 4 cut(s) 47, 68, 86, 160
Bst6I CTCTTC 2 cut(s) 23, 411
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 208, 338
BstDEI CTNAG 1 cut(s) 276
BstDSI CCRYGG 1 cut(s) 192
BstENI CCTNNNNNAGG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 3 cut(s) 67, 190, 296
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 376
BstNI CCWGG 4 cut(s) 47, 68, 86, 160
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 5 cut(s) 45, 66, 84, 147, 158
BstSFI CTRYAG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 181, 345
BstV2I GAAGAC 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 4 cut(s) 78, 152, 164, 424
BtgI CCRYGG 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 208, 338
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 7 cut(s) 162, 163, 174, 213, 358, 363, 423
CpoI CGGWCCG 1 cut(s) 363
Csp6I GTAC 1 cut(s) 202
CspI CGGWCCG 1 cut(s) 363
CviAII CATG 2 cut(s) 193, 344
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 276
DinI GGCGCC 1 cut(s) 52
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 23, 411
EarI CTCTTC 2 cut(s) 23, 411
EciI GGCGGA 1 cut(s) 178
Ecl136II GAGCTC 2 cut(s) 6, 370
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 4 cut(s) 8, 74, 166, 372
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 4 cut(s) 174, 213, 358, 363
Eco53kI GAGCTC 2 cut(s) 6, 370
EcoICRI GAGCTC 2 cut(s) 6, 370
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 163, 423
EcoRII CCWGG 4 cut(s) 45, 66, 84, 158
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 4 cut(s) 8, 74, 166, 372
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 2 cut(s) 67, 190
FaeI CATG 2 cut(s) 196, 347
FaiI YATR 2 cut(s) 194, 345
FaqI GGGAC 2 cut(s) 100, 245
FatI CATG 2 cut(s) 192, 343
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 170, 334
FriOI GRGCYC 4 cut(s) 8, 74, 166, 372
Fsp4HI GCNGC 2 cut(s) 170, 334
GlaI GCGC 1 cut(s) 52
GluI GCNGC 2 cut(s) 170, 334
GsuI CTGGAG 4 cut(s) 8, 116, 241, 305
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 78, 152, 164, 424
HapII CCGG 7 cut(s) 75, 92, 100, 149, 207, 361, 373
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 2 cut(s) 196, 347
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 310
HpaII CCGG 7 cut(s) 75, 92, 100, 149, 207, 361, 373
Hpy188I TCNGA 4 cut(s) 18, 322, 367, 391
Hpy188III TCNNGA 6 cut(s) 25, 258, 278, 284, 373, 382
HpyAV CCTTC 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 376
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 2 cut(s) 196, 347
HspAI GCGC 1 cut(s) 51
KasI GGCGCC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 372
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 6 cut(s) 11, 77, 94, 135, 323, 375
Lsp1109I GCAGC 2 cut(s) 181, 345
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 2 cut(s) 382, 397
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 5 cut(s) 40, 262, 340, 343, 398
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 4 cut(s) 8, 74, 166, 372
Mly113I GGCGCC 1 cut(s) 51
MmeI TCCRAC 2 cut(s) 345, 414
MreI CGCCGGCG 1 cut(s) 206
MroI TCCGGA 1 cut(s) 372
MroNI GCCGGC 1 cut(s) 206
MseI TTAA 2 cut(s) 219, 438
MspA1I CMGCKG 2 cut(s) 172, 336
MspI CCGG 7 cut(s) 75, 92, 100, 149, 207, 361, 373
MspR9I CCNGG 5 cut(s) 47, 68, 86, 149, 160
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 4 cut(s) 47, 68, 86, 160
MwoI GCNNNNNNNGC 1 cut(s) 376
NaeI GCCGGC 1 cut(s) 208
NarI GGCGCC 1 cut(s) 51
NciI CCSGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 192
NdeII GATC 1 cut(s) 280
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 2 cut(s) 196, 347
NlaIV GGNNCC 6 cut(s) 52, 73, 90, 164, 214, 319
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 2 cut(s) 382, 397
NspI RCATGY 1 cut(s) 347
PasI CCCWGGG 1 cut(s) 67
PciI ACATGT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 39
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 310
PflFI GACNNNGTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 2 cut(s) 171, 335
PluTI GGCGCC 1 cut(s) 54
PscI ACATGT 1 cut(s) 343
Psp124BI GAGCTC 2 cut(s) 8, 372
Psp6I CCWGG 4 cut(s) 45, 66, 84, 158
PspGI CCWGG 4 cut(s) 45, 66, 84, 158
PspN4I GGNNCC 6 cut(s) 52, 73, 90, 164, 214, 319
PspOMI GGGCCC 1 cut(s) 162
PspPI GGNCC 7 cut(s) 162, 163, 174, 213, 358, 363, 423
PstI CTGCAG 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 336
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
Rsr2I CGGWCCG 1 cut(s) 363
RsrII CGGWCCG 1 cut(s) 363
SacI GAGCTC 2 cut(s) 8, 372
SaqAI TTAA 2 cut(s) 219, 438
SatI GCNGC 2 cut(s) 170, 334
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 7 cut(s) 162, 163, 174, 213, 358, 363, 423
ScrFI CCNGG 5 cut(s) 47, 68, 86, 149, 160
SduI GDGCHC 4 cut(s) 8, 74, 166, 372
SfcI CTRYAG 1 cut(s) 167
SfoI GGCGCC 1 cut(s) 52
SgrAI CRCCGGYG 1 cut(s) 206
SinI GGWCC 4 cut(s) 174, 213, 358, 363
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 3 cut(s) 172, 189, 210
SspDI GGCGCC 1 cut(s) 50
SstI GAGCTC 2 cut(s) 8, 372
StyD4I CCNGG 5 cut(s) 45, 66, 84, 147, 158
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 81
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 219, 438
Tru9I TTAA 2 cut(s) 219, 438
TseFI GTSAC 2 cut(s) 382, 397
TseI GCWGC 2 cut(s) 169, 333
Tsp45I GTSAC 2 cut(s) 382, 397
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 172
Tth111I GACNNNGTC 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 159
VpaK11BI GGWCC 4 cut(s) 174, 213, 358, 363
XagI CCTNNNNNAGG 1 cut(s) 83
XceI RCATGY 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.