AT4G35530
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011274
Physical Location & Seq
Reverse (-)
16871734 .. 16873722
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35530.1

Sequence Viewer

Length: 588 bp
ATGGTGAGCTTGTCTGTTTCGAATAAGAGATACACTTACATACACGAAAGTGGAAGTAAGTCAACTAGAGAAGCCATTGATATTCACCATGTGATTATCAACGGAAGCAGCGGAACTGGTTATGCCCGTCGTTGGGGGCTTGGTTTCTTCCTTGTGTTTCTGGCGAGTTCTATGTACTTTTTGCTTGGAAAGGACAATCCAGCTAGAACTCTTTCTTGGGGCTGCCTTTTAAGTGGTTTCTTGGTTATGCTACATAGTCGCAAGTTCGTCAAGAAAGAATCTGTGATAATCTTGCCAACCTTCGGGATCCAACTTGAAACTCAATATTTAAGTGGAAAAACTGTCTCCAGGTTTATCCCTATTGACAAGATTTTGAAGCCTGTGTTGGTCGAATGTGTCACTCCCATTACGTGTTACTGGAGTCTCTCTTTATTTCTTCGTGGTGAAGAACAACTTACATTGGTGTTTAAGGAACTGCGTCCTCCATTGAAGATGTTGGTTCCCATTTGGAAAGCATTGTGTGCTGCTATCGGTACAGACCACCAAAGTGAAACGATAGCTGAAGAAGAACATGATGTATCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

195

Amino Acids

21.94

Weight (kDa)

8.88

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-H PF10181 94 - 157 8.5e-18 GPI-GlcNAc transferase complex, PIG-H component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 301, 314
AcuI CTGAAG 1 cut(s) 582
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 2 cut(s) 176, 535
AfiI CCNNNNNNNGG 3 cut(s) 132, 133, 302
AflIII ACRYGT 1 cut(s) 410
AgsI TTSAA 3 cut(s) 317, 376, 490
AjnI CCWGG 1 cut(s) 347
AjuI GAANNNNNNNTTGG 4 cut(s) 199, 231, 368, 400
AleI CACNNNNGTG 2 cut(s) 48, 546
AluBI AGCT 3 cut(s) 9, 203, 560
AluI AGCT 3 cut(s) 9, 203, 560
Alw26I GTCTC 2 cut(s) 349, 428
AlwI GGATC 2 cut(s) 301, 314
ApeKI GCWGC 3 cut(s) 108, 222, 524
Asp700I GAANNNNTTC 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 16, 77, 455
AsuII TTCGAA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 120, 209, 511
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 349, 428
BfaI CTAG 3 cut(s) 66, 204, 582
BisI GCNGC 3 cut(s) 109, 223, 525
BlsI GCNGC 3 cut(s) 110, 224, 526
Bme1390I CCNGG 1 cut(s) 349
BmiI GGNNCC 2 cut(s) 308, 501
BmrFI CCNGG 1 cut(s) 349
BpmI CTGGAG 2 cut(s) 331, 439
Bpu14I TTCGAA 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 411
Bsc4I CCNNNNNNNGG 3 cut(s) 132, 133, 302
Bse1I ACTGG 2 cut(s) 121, 422
BseBI CCWGG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 132, 133, 302
BseNI ACTGG 2 cut(s) 121, 422
BseXI GCAGC 3 cut(s) 120, 209, 511
BslI CCNNNNNNNGG 3 cut(s) 132, 133, 302
BsmAI GTCTC 2 cut(s) 349, 428
Bsp119I TTCGAA 1 cut(s) 20
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 308, 501
BspPI GGATC 2 cut(s) 301, 314
BspT104I TTCGAA 1 cut(s) 20
BsrI ACTGG 2 cut(s) 121, 422
BssMI GATC 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 343
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 20
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 349, 428
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 120, 209, 511
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 175, 534
CviAII CATG 2 cut(s) 89, 572
CviJI RGCY 7 cut(s) 9, 74, 139, 203, 222, 379, 560
CviKI_1 RGCY 7 cut(s) 9, 74, 139, 203, 222, 379, 560
CviQI GTAC 2 cut(s) 175, 534
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
DraIII CACNNNGTG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 347
FaeI CATG 2 cut(s) 92, 575
FaiI YATR 7 cut(s) 41, 90, 123, 173, 248, 255, 573
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 2 cut(s) 88, 571
Fnu4HI GCNGC 3 cut(s) 109, 223, 525
Fsp4HI GCNGC 3 cut(s) 109, 223, 525
FspBI CTAG 3 cut(s) 66, 204, 582
GluI GCNGC 3 cut(s) 109, 223, 525
GsuI CTGGAG 2 cut(s) 331, 439
HgaI GACGC 1 cut(s) 467
Hin1II CATG 2 cut(s) 92, 575
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 2 cut(s) 278, 421
HphI GGTGA 3 cut(s) 16, 77, 455
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 271, 304
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 410
Hsp92II CATG 2 cut(s) 92, 575
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 7 cut(s) 102, 146, 213, 334, 361, 393, 403
Lsp1109I GCAGC 3 cut(s) 120, 209, 511
MaeI CTAG 3 cut(s) 66, 204, 582
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 2 cut(s) 397, 413
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 6 cut(s) 139, 428, 458, 502, 575, 578
MflI RGATCY 1 cut(s) 306
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 1 cut(s) 492
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 4 cut(s) 230, 329, 468, 586
MslI CAYNNNNRTG 2 cut(s) 48, 546
MspA1I CMGCKG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeII GATC 1 cut(s) 306
NlaIII CATG 2 cut(s) 92, 575
NlaIV GGNNCC 2 cut(s) 308, 501
NmuCI GTSAC 1 cut(s) 397
NspV TTCGAA 1 cut(s) 20
OliI CACNNNNGTG 2 cut(s) 48, 546
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 110, 224, 526
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
Ppu21I YACGTR 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspN4I GGNNCC 2 cut(s) 308, 501
PsuI RGATCY 1 cut(s) 306
RsaI GTAC 2 cut(s) 176, 535
RsaNI GTAC 2 cut(s) 175, 534
RseI CAYNNNNRTG 2 cut(s) 48, 546
SaqAI TTAA 4 cut(s) 230, 329, 468, 586
SatI GCNGC 3 cut(s) 109, 223, 525
Sau3AI GATC 1 cut(s) 306
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 349
SetI ASST 6 cut(s) 11, 205, 302, 353, 413, 562
SfuI TTCGAA 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 48, 546
SsiI CCGC 1 cut(s) 111
SspI AATATT 1 cut(s) 326
SspMI CTAG 3 cut(s) 66, 204, 582
StyD4I CCNGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 413
TaqI TCGA 2 cut(s) 20, 390
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 4 cut(s) 230, 329, 468, 586
Tru9I TTAA 4 cut(s) 230, 329, 468, 586
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 3 cut(s) 108, 222, 524
Tsp45I GTSAC 1 cut(s) 397
TspGWI ACGGA 1 cut(s) 117
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 3 cut(s) 66, 204, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.