RLG00000016703
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011274
Physical Location & Seq
Reverse (-)
9255562 .. 9257970
2409 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016703

Sequence Viewer

Length: 504 bp
ATGTTGAAAAAAAGAGGAAGACGACCAAGATTCGAGAAGCTTCAGGGGCTTCATCGATCACCATTGAGCTCGAACCAGGTCTCCGTCTCAGATGAAGCAAACGCCTTCCATCTTTTCTTAGTAAAGGGAGGTTCAGTTATCATTCTTTTATGGAGTTTCCTTTTAGATGCATTCCTTGTAAAGTTGCTTTGGAAGGGTGTTACAAAAGAGTCCGTTGTGGTTATGCCAGCCTTTGGAGTTCAACTTGAAACTCATTATAAGAGTGGAAGAGTTGCTCGTCGCTTTGTTCCTATTGACAAGATTTTGAAACCTGTGCTACTAGAATGTGTGACTCCTGTTACTTGTTACTGGAGCCTCTCTTTCATTGTACATGGAGAAGCAGATTTGGTGCTAGTTTTTAAGGAATTACGTCCCCCTATGAAAATGTTGGCCCCCATCTGGAAGGCCTTGTGTGCTGCTACTGGTAGTAAAGAAAGCTTAGACACATGTAAGGAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

9.69

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-H PF10181 71 - 134 1e-18 GPI-GlcNAc transferase complex, PIG-H component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 258
AccB7I CCANNNNNTGG 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 233, 438
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 4 cut(s) 7, 242, 248, 307
AjnI CCWGG 1 cut(s) 75
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 40, 69, 477
AluI AGCT 3 cut(s) 40, 69, 477
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 85, 91
AoxI GGCC 2 cut(s) 429, 444
ApeKI GCWGC 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 442
BccI CCATC 2 cut(s) 117, 443
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 85, 91
BfaI CTAG 2 cut(s) 320, 392
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 353, 432
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 25
BpmI CTGGAG 1 cut(s) 370
Bsa29I ATCGAT 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 120, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 438
Bse1I ACTGG 2 cut(s) 353, 466
BseBI CCWGG 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 55
BseLI CCNNNNNNNGG 2 cut(s) 233, 438
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 2 cut(s) 353, 466
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 2 cut(s) 431, 446
BshVI ATCGAT 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 2 cut(s) 233, 438
BsmAI GTCTC 2 cut(s) 85, 91
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 396
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 2 cut(s) 431, 446
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 1 cut(s) 56
BspANI GGCC 2 cut(s) 431, 446
BspCNI CTCAG 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 353, 432
BspTNI GGTCTC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 2 cut(s) 353, 466
BssMI GATC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 88, 118, 478
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 2 cut(s) 85, 91
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 46, 452
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 25
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 2 cut(s) 431, 446
BsuTUI ATCGAT 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 55
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 368
CviAII CATG 2 cut(s) 371, 486
CviJI RGCY 8 cut(s) 40, 49, 69, 230, 354, 431, 446, 477
CviKI_1 RGCY 8 cut(s) 40, 49, 69, 230, 354, 431, 446, 477
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 88, 118, 478
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 75
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 71
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 2 cut(s) 374, 489
FaiI YATR 6 cut(s) 151, 224, 258, 372, 419, 487
FaqI GGGAC 1 cut(s) 396
FatI CATG 2 cut(s) 370, 485
Fnu4HI GCNGC 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 2 cut(s) 320, 392
GluI GCNGC 1 cut(s) 456
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 2 cut(s) 431, 446
Hin1II CATG 2 cut(s) 374, 489
HindIII AAGCTT 2 cut(s) 38, 475
HinfI GANTC 3 cut(s) 30, 209, 331
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 34, 439
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 3 cut(s) 115, 187, 436
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 452
HpyF3I CTNAG 3 cut(s) 88, 118, 478
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 2 cut(s) 374, 489
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 9 cut(s) 29, 62, 89, 240, 324, 334, 348, 424, 447
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 157
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 2 cut(s) 320, 392
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 4 cut(s) 199, 328, 337, 344
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 2 cut(s) 30, 279
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 404
MlyI GAGTC 2 cut(s) 218, 325
MnlI CCTC 3 cut(s) 8, 122, 365
Mph1103I ATGCAT 1 cut(s) 172
MseI TTAA 1 cut(s) 399
MspR9I CCNGG 1 cut(s) 77
Mva1269I GAATGC 1 cut(s) 170
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 46, 452
NdeII GATC 1 cut(s) 56
NlaIII CATG 2 cut(s) 374, 489
NlaIV GGNNCC 2 cut(s) 353, 432
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 489
PceI AGGCCT 1 cut(s) 446
PciI ACATGT 1 cut(s) 485
PctI GAATGC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 2 cut(s) 217, 325
PpsI GAGTC 2 cut(s) 217, 325
PscI ACATGT 1 cut(s) 485
PsiI TTATAA 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspN4I GGNNCC 2 cut(s) 353, 432
PspPI GGNCC 1 cut(s) 430
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacI GAGCTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 430
SchI GAGTC 2 cut(s) 218, 325
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 42, 71, 81, 133, 313, 412, 479
SexAI ACCWGGT 1 cut(s) 75
SfaNI GCATC 1 cut(s) 157
Sse9I AATT 1 cut(s) 404
SseBI AGGCCT 1 cut(s) 446
SspMI CTAG 2 cut(s) 320, 392
SstI GAGCTC 1 cut(s) 71
StuI AGGCCT 1 cut(s) 446
StyD4I CCNGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 33, 55, 71
TasI AATT 1 cut(s) 404
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 41, 108, 352, 434
TspGWI ACGGA 2 cut(s) 73, 202
Van91I CCANNNNNTGG 1 cut(s) 233
XceI RCATGY 1 cut(s) 489
XspI CTAG 2 cut(s) 320, 392
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.