pycom02g08970
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0011274
Physical Location & Seq
Reverse (-)
6183939 .. 6185106
1168 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g08970.1

Sequence Viewer

Length: 555 bp
ATGGTGGGTTCATCTATAACTAATTCGAGATATACGTATTTACATGACTGTAAGCGGCCTTGTGAAGCAGTTGACGTGCACCACATCATTGTTCGAAAGAGTGGTGCGAAGGGTTTCTTAATGTACATGTTTGCTGTTGTTATTCTAGCTACCGCCTTCTACATTTTCTTTGTTAAGGAGAAATCAGTCATCATTGTTTTATGGAGTCTCCTTTTAGATGCGTTCCTTGTAAAATTGCTTCAGAAGAGTGTTGAGAAAGAGTCCATCATGGTTATGCCAGCGTTTGGAGTTCAACTAGAAACTCACTATGTGAGTGGAAAGATTATTCGTCGGTTCGTTCCTATGGACAAGATTTTGAAACCTGTGGTACTAGAATGTGTGACTCCAGTTACTTGTTACTGGAGCCTGTCTTTCATTGTACATGGGGAAGCAGAATTGGTATTAGTTTTTAAGGAATTGCGTCCGCCTATGAAAATGTTGGTGCCCATCTGGAAGGCCTTATGTGCTGCCACTGGTACTAAAGGAAGCTCAAACGCATGTACGGAAGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

185

Amino Acids

20.72

Weight (kDa)

9.01

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-H PF10181 88 - 151 8.9e-19 GPI-GlcNAc transferase complex, PIG-H component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 284
AciI CCGC 3 cut(s) 55, 153, 464
AcuI CTGAAG 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 5 cut(s) 125, 369, 420, 517, 541
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 293, 358
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 2 cut(s) 149, 528
AluI AGCT 2 cut(s) 149, 528
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 77
AoxI GGCC 2 cut(s) 56, 495
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 94
BaeGI GKGCMC 2 cut(s) 81, 486
BanI GGYRCC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 272, 494
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 3 cut(s) 146, 296, 371
BisI GCNGC 2 cut(s) 56, 507
BlsI GCNGC 2 cut(s) 57, 508
BmgBI CACGTC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 404, 483
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 369, 421
Bpu14I TTCGAA 1 cut(s) 94
BsaAI YACGTR 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 3 cut(s) 386, 404, 517
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 3 cut(s) 386, 404, 517
BseSI GKGCMC 2 cut(s) 81, 486
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 2 cut(s) 58, 497
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 2 cut(s) 58, 497
Bsp119I TTCGAA 1 cut(s) 94
Bsp1286I GDGCHC 2 cut(s) 81, 486
Bsp1407I TGTACA 2 cut(s) 123, 418
BspACI CCGC 3 cut(s) 55, 153, 464
BspANI GGCC 2 cut(s) 58, 497
BspLI GGNNCC 2 cut(s) 404, 483
BspT104I TTCGAA 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 481
BsrGI TGTACA 2 cut(s) 123, 418
BsrI ACTGG 3 cut(s) 386, 404, 517
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 2 cut(s) 123, 418
BstBAI YACGTR 1 cut(s) 36
BstBI TTCGAA 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 279
BstMAI GTCTC 1 cut(s) 212
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNSI RCATGY 2 cut(s) 130, 540
BstSLI GKGCMC 2 cut(s) 81, 486
BstSNI TACGTA 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 493
BsuRI GGCC 2 cut(s) 58, 497
BtrI CACGTC 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 279
CseI GACGC 1 cut(s) 449
Csp6I GTAC 5 cut(s) 124, 368, 419, 516, 540
CviAII CATG 5 cut(s) 44, 127, 268, 422, 537
CviJI RGCY 5 cut(s) 58, 149, 405, 497, 528
CviKI_1 RGCY 5 cut(s) 58, 149, 405, 497, 528
CviQI GTAC 5 cut(s) 124, 368, 419, 516, 540
DraIII CACNNNGTG 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
EciI GGCGGA 1 cut(s) 453
Eco105I TACGTA 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 497
Eco57I CTGAAG 1 cut(s) 224
FaeI CATG 5 cut(s) 47, 130, 271, 425, 540
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 5 cut(s) 43, 126, 267, 421, 536
Fnu4HI GCNGC 2 cut(s) 56, 507
Fsp4HI GCNGC 2 cut(s) 56, 507
FspBI CTAG 3 cut(s) 146, 296, 371
GluI GCNGC 2 cut(s) 56, 507
GsuI CTGGAG 2 cut(s) 369, 421
HaeIII GGCC 2 cut(s) 58, 497
HgaI GACGC 1 cut(s) 449
Hin1II CATG 5 cut(s) 47, 130, 271, 425, 540
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HinfI GANTC 3 cut(s) 205, 260, 382
Hpy166II GTNNAC 2 cut(s) 73, 79
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 27, 490
Hpy8I GTNNAC 2 cut(s) 73, 79
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 3 cut(s) 103, 166, 487
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 35, 75
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpySE526I ACGT 2 cut(s) 35, 75
Hsp92II CATG 5 cut(s) 47, 130, 271, 425, 540
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 7 cut(s) 291, 375, 385, 399, 419, 475, 498
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 146, 296, 371
MaeII ACGT 2 cut(s) 35, 75
MaeIII GTNAC 3 cut(s) 379, 388, 395
MboII GAAGA 1 cut(s) 256
MhlI GDGCHC 2 cut(s) 81, 486
MluCI AATT 4 cut(s) 22, 233, 434, 455
MlyI GAGTC 3 cut(s) 214, 269, 376
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 3 cut(s) 119, 174, 450
MslI CAYNNNNRTG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 503
NlaIII CATG 5 cut(s) 47, 130, 271, 425, 540
NlaIV GGNNCC 2 cut(s) 404, 483
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 2 cut(s) 130, 540
NspV TTCGAA 1 cut(s) 94
PceI AGGCCT 1 cut(s) 497
PciI ACATGT 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 2 cut(s) 57, 508
PleI GAGTC 3 cut(s) 213, 268, 376
PpsI GAGTC 3 cut(s) 213, 268, 376
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 404, 483
RsaI GTAC 5 cut(s) 125, 369, 420, 517, 541
RsaNI GTAC 5 cut(s) 124, 368, 419, 516, 540
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 3 cut(s) 119, 174, 450
SatI GCNGC 2 cut(s) 56, 507
SchI GAGTC 3 cut(s) 214, 269, 376
SduI GDGCHC 2 cut(s) 81, 486
SetI ASST 5 cut(s) 38, 78, 151, 364, 530
SfaNI GCATC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 272
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 4 cut(s) 22, 233, 434, 455
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 3 cut(s) 55, 153, 464
SspMI CTAG 3 cut(s) 146, 296, 371
StuI AGGCCT 1 cut(s) 497
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 2 cut(s) 38, 78
TaqI TCGA 2 cut(s) 26, 94
TasI AATT 4 cut(s) 22, 233, 434, 455
TatI WGTACW 2 cut(s) 123, 418
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 3 cut(s) 119, 174, 450
Tru9I TTAA 3 cut(s) 119, 174, 450
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 403, 485
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 77
XceI RCATGY 2 cut(s) 130, 540
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 3 cut(s) 146, 296, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.