Rw2G008660
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011274
Physical Location & Seq
Reverse (-)
8684634 .. 8686100
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008660.1

Sequence Viewer

Length: 555 bp
ATGGTGGGTTCTTGTATAAGTAATTCGAGATATACATACATACATGGCTCCAAATGGCCTAACGAGGCGGTTGACGTGCACCAAATCATTGTTAAAAAGAGTGGTGCAAAGGGTTTCTTAGTCTACTTCTTTGCTCTCATTATTCTAGCAAACGCCTTCCATCTTTTCTTAGTAAAGGGAGGTTCAGTTATCATTCTTTTATGGAGTTTCCTTTTAGATGCATTCCTTGTAAAGTTGCTTTGGAAGGGTGTTACAAAAGAGTCTGTTGTGGTTATGCCAGCCTTTGGAGTTCAACTTGAAACTCATTATAAGAGTGGAAGAGTTGCTCGTCGCTTTGTTCCTATTGACAAGATTTTGAAACCTGTGCTACTAGAATGTGTGACTCCTGTTACTTGTTACTGGAGCCTGTCTTTCATTGTACATGGAGAAGCAGATTTGGTGCTAGTTTTTAAGGAATTACGTCCCCCTATGAAAATGTTGGCCCCCATCTGGAAGGCCTTGTGTGCTGCTACTGGTAGTAAAGAAAGCTTAGACACATGTAAGGAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

9.32

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-H PF10181 88 - 151 1.3e-18 GPI-GlcNAc transferase complex, PIG-H component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 68
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 284, 489
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 3 cut(s) 293, 299, 358
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw21I GWGCWC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 77
AoxI GGCC 3 cut(s) 56, 480, 495
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 168, 494
BfaI CTAG 3 cut(s) 146, 371, 443
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 3 cut(s) 49, 404, 483
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 489
Bse1I ACTGG 2 cut(s) 404, 517
BseLI CCNNNNNNNGG 2 cut(s) 284, 489
BseNI ACTGG 2 cut(s) 404, 517
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 3 cut(s) 58, 482, 497
BsiHKAI GWGCWC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 447
BslI CCNNNNNNNGG 2 cut(s) 284, 489
BsmFI GGGAC 1 cut(s) 447
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 3 cut(s) 58, 482, 497
Bsp1286I GDGCHC 1 cut(s) 81
Bsp1407I TGTACA 1 cut(s) 418
BspACI CCGC 1 cut(s) 68
BspANI GGCC 3 cut(s) 58, 482, 497
BspLI GGNNCC 3 cut(s) 49, 404, 483
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 2 cut(s) 404, 517
Bst6I CTCTTC 1 cut(s) 313
BstAUI TGTACA 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 118, 169, 529
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 493
BsuRI GGCC 3 cut(s) 58, 482, 497
BtrI CACGTC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 419
CviAII CATG 3 cut(s) 44, 422, 537
CviJI RGCY 7 cut(s) 48, 58, 281, 405, 482, 497, 528
CviKI_1 RGCY 7 cut(s) 48, 58, 281, 405, 482, 497, 528
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 3 cut(s) 118, 169, 529
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
Eco147I AGGCCT 1 cut(s) 497
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 3 cut(s) 47, 425, 540
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 1 cut(s) 447
FatI CATG 3 cut(s) 43, 421, 536
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 3 cut(s) 146, 371, 443
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 3 cut(s) 58, 482, 497
Hin1II CATG 3 cut(s) 47, 425, 540
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 2 cut(s) 260, 382
Hpy166II GTNNAC 3 cut(s) 73, 79, 124
Hpy188III TCNNGA 2 cut(s) 27, 490
Hpy8I GTNNAC 3 cut(s) 73, 79, 124
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 3 cut(s) 166, 238, 487
HpyCH4IV ACGT 2 cut(s) 75, 460
HpyCH4V TGCA 3 cut(s) 79, 107, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpyF3I CTNAG 3 cut(s) 118, 169, 529
HpySE526I ACGT 2 cut(s) 75, 460
Hsp92II CATG 3 cut(s) 47, 425, 540
LmnI GCTCC 2 cut(s) 53, 402
LpnPI CCDG 7 cut(s) 291, 375, 385, 399, 419, 475, 498
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 146, 371, 443
MaeII ACGT 2 cut(s) 75, 460
MaeIII GTNAC 4 cut(s) 250, 379, 388, 395
MboII GAAGA 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 2 cut(s) 22, 455
MlyI GAGTC 2 cut(s) 269, 376
MnlI CCTC 2 cut(s) 58, 173
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 2 cut(s) 93, 450
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 503
NlaIII CATG 3 cut(s) 47, 425, 540
NlaIV GGNNCC 3 cut(s) 49, 404, 483
NmuCI GTSAC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 540
PceI AGGCCT 1 cut(s) 497
PciI ACATGT 1 cut(s) 536
PctI GAATGC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 2 cut(s) 268, 376
PpsI GAGTC 2 cut(s) 268, 376
PscI ACATGT 1 cut(s) 536
PsiI TTATAA 1 cut(s) 309
PspN4I GGNNCC 3 cut(s) 49, 404, 483
PspPI GGNCC 1 cut(s) 481
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 93, 450
SatI GCNGC 1 cut(s) 507
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 2 cut(s) 269, 376
SduI GDGCHC 1 cut(s) 81
SetI ASST 5 cut(s) 78, 184, 364, 463, 530
SfaNI GCATC 1 cut(s) 208
Sse9I AATT 2 cut(s) 22, 455
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 1 cut(s) 68
SspMI CTAG 3 cut(s) 146, 371, 443
StuI AGGCCT 1 cut(s) 497
TaiI ACGT 2 cut(s) 78, 463
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 22, 455
TatI WGTACW 1 cut(s) 418
Tru1I TTAA 2 cut(s) 93, 450
Tru9I TTAA 2 cut(s) 93, 450
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 403, 485
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 77
XceI RCATGY 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 3 cut(s) 146, 371, 443
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.