pycom15g20560
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0011274
Physical Location & Seq
Reverse (-)
14727733 .. 14728870
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20560.5

Sequence Viewer

Length: 552 bp
ATGCGTTCATCTATAACTAGTTCGAAATATACGTATTTACATGACTGTAGGTGGCCTTGTGAAGCAGTTGACGTGCACCACATCATTGTAAAAAAGAGTGGTGCAAAGGGTTTCTTCAGATACTTCTTTTCTCTGGTTATTCTAGCTACCGCCTTCTATCTTTTCTTGGTTAAGGAGAAATCAGTCGTCATTGTTTTATGGAGTCTCCTTTTAAATGCATTCCTTGTAAAGTTGCTTCAGAAGAGTGTTGAGAAAGAGTCCGTAGTGATTATGCCAGCCTTTGGAGTTCAACTAGAAACTCACTATGTGAGTGGAAAGGTTATTCGCCGGTTTGTTCCTATGGACAAGATTTTGAAGCCTGTGCTACTAGAATGTGTGACTCCAGTTACATGTTACTGGAGCCTGTCTTTCATTGTGCACGGGGAAGCAGAATTGGTGTTAGTGTTTAAGGACTTGCGTCCGCCTATGAAAATGTTGGTGCCCATCTGGAAGGCCTTGTGCGCTGCCACTGGTACTAAAGGAAGCTCAAACACATGTACGGAAGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

184

Amino Acids

20.69

Weight (kDa)

9.23

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 2 cut(s) 150, 461
AcuI CTGAAG 2 cut(s) 100, 221
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 2 cut(s) 514, 538
AfiI CCNNNNNNNGG 1 cut(s) 281
AflIII ACRYGT 2 cut(s) 389, 533
AgsI TTSAA 2 cut(s) 290, 355
AhlI ACTAGT 1 cut(s) 17
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 2 cut(s) 146, 525
AluI AGCT 2 cut(s) 146, 525
Alw21I GWGCWC 2 cut(s) 78, 420
Alw26I GTCTC 1 cut(s) 209
Alw44I GTGCAC 2 cut(s) 74, 416
AoxI GGCC 2 cut(s) 53, 492
ApaLI GTGCAC 2 cut(s) 74, 416
ApeKI GCWGC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 503
AsuII TTCGAA 1 cut(s) 23
BaeGI GKGCMC 3 cut(s) 78, 420, 483
BanI GGYRCC 1 cut(s) 478
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
Bbv12I GWGCWC 2 cut(s) 78, 420
BbvI GCAGC 1 cut(s) 490
BccI CCATC 2 cut(s) 491, 539
BcoDI GTCTC 1 cut(s) 209
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 4 cut(s) 18, 143, 293, 368
BfmI CTRYAG 1 cut(s) 46
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 401, 480
BoxI GACNNNNGTC 1 cut(s) 456
BpmI CTGGAG 2 cut(s) 366, 418
Bpu14I TTCGAA 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 383, 401, 514
BseLI CCNNNNNNNGG 1 cut(s) 281
BseNI ACTGG 3 cut(s) 383, 401, 514
BseSI GKGCMC 3 cut(s) 78, 420, 483
BseXI GCAGC 1 cut(s) 490
BshFI GGCC 2 cut(s) 55, 494
BshNI GGYRCC 1 cut(s) 478
BsiHKAI GWGCWC 2 cut(s) 78, 420
BsiSI CCGG 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 2 cut(s) 55, 494
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 78, 420, 483
BspACI CCGC 2 cut(s) 150, 461
BspANI GGCC 2 cut(s) 55, 494
BspLI GGNNCC 2 cut(s) 401, 480
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 3 cut(s) 383, 401, 514
BssAI RCCGGY 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 276
BstHHI GCGC 1 cut(s) 503
BstMAI GTCTC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNSI RCATGY 2 cut(s) 393, 537
BstPAI GACNNNNGTC 1 cut(s) 456
BstSFI CTRYAG 1 cut(s) 46
BstSLI GKGCMC 3 cut(s) 78, 420, 483
BstSNI TACGTA 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 490
BsuRI GGCC 2 cut(s) 55, 494
BtrI CACGTC 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 1 cut(s) 327
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 513, 537
CviAII CATG 3 cut(s) 41, 390, 534
CviJI RGCY 7 cut(s) 55, 146, 278, 358, 402, 494, 525
CviKI_1 RGCY 7 cut(s) 55, 146, 278, 358, 402, 494, 525
CviQI GTAC 2 cut(s) 513, 537
DraI TTTAAA 1 cut(s) 213
DraIII CACNNNGTG 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 450
Eco105I TACGTA 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 494
Eco57I CTGAAG 2 cut(s) 100, 221
EcoT22I ATGCAT 1 cut(s) 220
FaeI CATG 3 cut(s) 44, 393, 537
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FatI CATG 3 cut(s) 40, 389, 533
Fnu4HI GCNGC 1 cut(s) 504
Fsp4HI GCNGC 1 cut(s) 504
FspBI CTAG 4 cut(s) 18, 143, 293, 368
GlaI GCGC 1 cut(s) 502
GluI GCNGC 1 cut(s) 504
GsuI CTGGAG 2 cut(s) 366, 418
HaeIII GGCC 2 cut(s) 55, 494
HapII CCGG 1 cut(s) 328
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 503
Hin1II CATG 3 cut(s) 44, 393, 537
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 3 cut(s) 202, 257, 379
HpaII CCGG 1 cut(s) 328
Hpy166II GTNNAC 3 cut(s) 70, 76, 418
Hpy188I TCNGA 2 cut(s) 119, 240
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 3 cut(s) 70, 76, 418
HpyAV CCTTC 2 cut(s) 163, 484
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 2 cut(s) 32, 72
HpyCH4V TGCA 4 cut(s) 76, 104, 218, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpySE526I ACGT 2 cut(s) 32, 72
Hsp92II CATG 3 cut(s) 44, 393, 537
HspAI GCGC 1 cut(s) 501
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 9 cut(s) 119, 288, 341, 372, 382, 396, 416, 472, 495
Lsp1109I GCAGC 1 cut(s) 490
MaeI CTAG 4 cut(s) 18, 143, 293, 368
MaeII ACGT 2 cut(s) 32, 72
MaeIII GTNAC 3 cut(s) 376, 385, 392
MboII GAAGA 2 cut(s) 106, 253
MhlI GDGCHC 3 cut(s) 78, 420, 483
MluCI AATT 1 cut(s) 431
MlyI GAGTC 3 cut(s) 211, 266, 373
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 3 cut(s) 171, 212, 447
MspI CCGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 500
NlaIII CATG 3 cut(s) 44, 393, 537
NlaIV GGNNCC 2 cut(s) 401, 480
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 2 cut(s) 393, 537
NspV TTCGAA 1 cut(s) 23
PceI AGGCCT 1 cut(s) 494
PciI ACATGT 2 cut(s) 389, 533
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 218
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 3 cut(s) 210, 265, 373
PpsI GAGTC 3 cut(s) 210, 265, 373
Ppu21I YACGTR 1 cut(s) 33
PscI ACATGT 2 cut(s) 389, 533
PshAI GACNNNNGTC 1 cut(s) 456
PspN4I GGNNCC 2 cut(s) 401, 480
RsaI GTAC 2 cut(s) 514, 538
RsaNI GTAC 2 cut(s) 513, 537
SaqAI TTAA 3 cut(s) 171, 212, 447
SatI GCNGC 1 cut(s) 504
SchI GAGTC 3 cut(s) 211, 266, 373
SduI GDGCHC 3 cut(s) 78, 420, 483
SetI ASST 6 cut(s) 35, 53, 75, 148, 321, 527
SfcI CTRYAG 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 23
SnaBI TACGTA 1 cut(s) 33
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 1 cut(s) 431
SseBI AGGCCT 1 cut(s) 494
SsiI CCGC 2 cut(s) 150, 461
SspMI CTAG 4 cut(s) 18, 143, 293, 368
StuI AGGCCT 1 cut(s) 494
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 2 cut(s) 35, 75
TaqI TCGA 1 cut(s) 23
TasI AATT 1 cut(s) 431
Tru1I TTAA 3 cut(s) 171, 212, 447
Tru9I TTAA 3 cut(s) 171, 212, 447
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 400, 482
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 1 cut(s) 514
Van91I CCANNNNNTGG 1 cut(s) 281
VneI GTGCAC 2 cut(s) 74, 416
XceI RCATGY 2 cut(s) 393, 537
XspI CTAG 4 cut(s) 18, 143, 293, 368
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.