MD02G1114800.v1.1
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011274
Physical Location & Seq
Reverse (-)
9329559 .. 9331813
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1114800.v1.1.491

Sequence Viewer

Length: 555 bp
ATGGTGGGTTCATCTATAACTAATTCGAGATATACGTATTTACATGACTGTAAGCGGCCTTGTGAAGCAGTTGATGTGCACCACATCATTGTAAGAAAGAGTGGTGCGAAGGGTCTCTTCGTATACTTGTTTGCTGTTGTTATTCTAGCTACCGCCTTCTACGTTTTCTTTGTTAAGGAGAAATCAGTCATCATTGTTTTATGGAGTCTCCTTTTAGATGCGTTCCTTGTAAAATTGCTTCAGAAGAGTGTTGAGAAAGAGTCCATCATGGTTATGCCAGCGTTTGGAGTTCAACTAGAAACTCACTATGTGAGTGGAAAGATTATTCGTCGGTTCGTTCCTATGGACAAGATTTTAAAACCTGTGGTACTAGAATGTGTGACTCCAGTTACTTGTTACTGGAGCCTGTCTTTCATTGTACACGGGGAAGCAGAATTGGTATTAGTTTTTAAGGAATTGCGTCCGCCTATGAAAATGTTGGTGCCCATCTGGAAGGCCTTATGTGCTGCCACTGGTACTAAAGGAAGCTCAAACGCATGTACGGAAGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

185

Amino Acids

20.61

Weight (kDa)

9.01

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-H PF10181 88 - 151 8.9e-19 GPI-GlcNAc transferase complex, PIG-H component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 123
AciI CCGC 3 cut(s) 55, 153, 464
AcuI CTGAAG 1 cut(s) 224
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 4 cut(s) 369, 420, 517, 541
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 2 cut(s) 149, 528
AluI AGCT 2 cut(s) 149, 528
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 119, 212
Alw44I GTGCAC 1 cut(s) 77
AoxI GGCC 2 cut(s) 56, 495
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 506
BaeGI GKGCMC 2 cut(s) 81, 486
BanI GGYRCC 1 cut(s) 481
BarI GAAGNNNNNNTAC 2 cut(s) 222, 254
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 493
BccI CCATC 3 cut(s) 272, 494, 542
BcoDI GTCTC 2 cut(s) 119, 212
BfaI CTAG 3 cut(s) 146, 296, 371
BisI GCNGC 2 cut(s) 56, 507
BlsI GCNGC 2 cut(s) 57, 508
BmiI GGNNCC 2 cut(s) 404, 483
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 369, 421
BsaAI YACGTR 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 3 cut(s) 386, 404, 517
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 3 cut(s) 386, 404, 517
BseSI GKGCMC 2 cut(s) 81, 486
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 2 cut(s) 58, 497
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 2 cut(s) 119, 212
BsnI GGCC 2 cut(s) 58, 497
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 2 cut(s) 81, 486
Bsp1407I TGTACA 1 cut(s) 418
BspACI CCGC 3 cut(s) 55, 153, 464
BspANI GGCC 2 cut(s) 58, 497
BspLI GGNNCC 2 cut(s) 404, 483
BspT107I GGYRCC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 3 cut(s) 386, 404, 517
BssNAI GTATAC 1 cut(s) 124
Bst1107I GTATAC 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 122, 239
BstAUI TGTACA 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 279
BstMAI GTCTC 2 cut(s) 119, 212
BstMWI GCNNNNNNNGC 1 cut(s) 503
BstNSI RCATGY 1 cut(s) 540
BstSLI GKGCMC 2 cut(s) 81, 486
BstSNI TACGTA 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 493
BstZ17I GTATAC 1 cut(s) 124
BsuRI GGCC 2 cut(s) 58, 497
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 279
CseI GACGC 1 cut(s) 449
Csp6I GTAC 4 cut(s) 368, 419, 516, 540
CviAII CATG 3 cut(s) 44, 268, 537
CviJI RGCY 5 cut(s) 58, 149, 405, 497, 528
CviKI_1 RGCY 5 cut(s) 58, 149, 405, 497, 528
CviQI GTAC 4 cut(s) 368, 419, 516, 540
DraI TTTAAA 1 cut(s) 357
DraIII CACNNNGTG 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 122, 239
EarI CTCTTC 2 cut(s) 122, 239
EciI GGCGGA 1 cut(s) 453
Eco105I TACGTA 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 224
FaeI CATG 3 cut(s) 47, 271, 540
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FatI CATG 3 cut(s) 43, 267, 536
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 56, 507
Fsp4HI GCNGC 2 cut(s) 56, 507
FspBI CTAG 3 cut(s) 146, 296, 371
GluI GCNGC 2 cut(s) 56, 507
GsuI CTGGAG 2 cut(s) 369, 421
HaeIII GGCC 2 cut(s) 58, 497
HgaI GACGC 1 cut(s) 449
Hin1II CATG 3 cut(s) 47, 271, 540
HinfI GANTC 3 cut(s) 205, 260, 382
Hpy166II GTNNAC 3 cut(s) 79, 124, 421
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 27, 490
Hpy8I GTNNAC 3 cut(s) 79, 124, 421
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 3 cut(s) 103, 166, 487
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 35, 162
HpyCH4V TGCA 1 cut(s) 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 503
HpySE526I ACGT 2 cut(s) 35, 162
Hsp92II CATG 3 cut(s) 47, 271, 540
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 7 cut(s) 291, 375, 385, 399, 419, 475, 498
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 146, 296, 371
MaeII ACGT 2 cut(s) 35, 162
MaeIII GTNAC 3 cut(s) 379, 388, 395
MboII GAAGA 2 cut(s) 109, 256
MhlI GDGCHC 2 cut(s) 81, 486
MluCI AATT 4 cut(s) 22, 233, 434, 455
MlyI GAGTC 3 cut(s) 214, 269, 376
MseI TTAA 3 cut(s) 174, 356, 450
MslI CAYNNNNRTG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 503
NlaIII CATG 3 cut(s) 47, 271, 540
NlaIV GGNNCC 2 cut(s) 404, 483
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 540
PceI AGGCCT 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 2 cut(s) 57, 508
PleI GAGTC 3 cut(s) 213, 268, 376
PpsI GAGTC 3 cut(s) 213, 268, 376
Ppu21I YACGTR 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 404, 483
RsaI GTAC 4 cut(s) 369, 420, 517, 541
RsaNI GTAC 4 cut(s) 368, 419, 516, 540
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 3 cut(s) 174, 356, 450
SatI GCNGC 2 cut(s) 56, 507
SchI GAGTC 3 cut(s) 214, 269, 376
SduI GDGCHC 2 cut(s) 81, 486
SetI ASST 5 cut(s) 38, 151, 165, 364, 530
SfaNI GCATC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 272
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 4 cut(s) 22, 233, 434, 455
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 3 cut(s) 55, 153, 464
SspMI CTAG 3 cut(s) 146, 296, 371
StuI AGGCCT 1 cut(s) 497
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 2 cut(s) 38, 165
TaqI TCGA 1 cut(s) 26
TasI AATT 4 cut(s) 22, 233, 434, 455
TatI WGTACW 1 cut(s) 418
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 3 cut(s) 174, 356, 450
Tru9I TTAA 3 cut(s) 174, 356, 450
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 403, 485
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 77
XceI RCATGY 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 3 cut(s) 146, 296, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.