FvH4_1g10271
NAC Family

GPI-GlcNAc transferase complex, PIG-H component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011274
Physical Location & Seq
Reverse (-)
5599188 .. 5600602
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10271.t1

Sequence Viewer

Length: 555 bp
ATGGTGAGTTCTTGTATAAGTAATTCGAGATATACGTACATACATGGCTCCAAGTGGCCTAATGAAGCAGTTGACGTGCACCAAGTCATTGTTAAAAAGAGTGGTGCAAAGGGGTTCTTAGTCTACTTCTTCGCTCTCGCTATTCTAGCAAACGCTTTCCATCTTTTCTTAGTTAAGGGCGGTTCAGTTATCATTCTTTTATGGAGTTTCCTTTTAGATGCATTCCTTGTAAAGTTGCTTTGGAAGAGTGTTACAAAAGAGTCCGTTGTGGTTATGCCAGCTTTTGGAGTTCAACTTGAAACACATTTTAAGAGTGGAAAAGTTACTCGTCGCTTTGTTCCCATTGACAAGATCTTGAAACCTGTGCTCCTAGAATGTGTGACTCCCGTTACTTGTTACTGGAGCCTGTCTTTCATTGTACATGGAGAAGCAGATTTGGTGCTAGTTTTTAAGGAATTACGTCCCCCTATGAAAATGTTGGTCCCCATCTGGAAGGCCTTGTGTGCTGCTACTGGTAGTAAAGAAAGCTTAGACACATGTAGGGAAGACGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00563 ko01100 map00563 map01100
Pfam Domains
Protein Families
PIG-H

Protein Analysis

185

Amino Acids

20.58

Weight (kDa)

9.22

Isoelectric Point (pI)

24.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-H PF10181 88 - 151 9.7e-19 GPI-GlcNAc transferase complex, PIG-H component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011274)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35530
fragaria_vesca FvH4_1g10271
malus_domestica MD02G1114800.v1.1 MD15G1230700.v1.1
prunus_persica Prupe.7G183400_v2.0.a1
pyrus_communis pycom02g08970 pycom15g20560
rosa_chinensis RchiOBHm_Chr2g0097101
rosa_laevigata RLG00000016703
rosa_multiflora Rmu_sc0024596.1_g000005
rosa_roxburghii Rroxscaffold_2G00144970
rosa_rugosa Rorug02G0063800 Rorug02G0063900 Rorug02G0064000 Rorug02G0064100
rosa_samantha Rh2AG111300 Rh2BG113200 Rh2CG115400 Rh2DG114600
rosa_wichuraiana Rw2G008660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 180
AfaI GTAC 2 cut(s) 38, 420
AfiI CCNNNNNNNGG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 536
AgsI TTSAA 3 cut(s) 293, 299, 358
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 2 cut(s) 281, 528
AluI AGCT 2 cut(s) 281, 528
Alw21I GWGCWC 2 cut(s) 81, 369
Alw44I GTGCAC 1 cut(s) 77
AoxI GGCC 2 cut(s) 56, 495
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 81, 369
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 168, 494
BfaI CTAG 3 cut(s) 146, 371, 443
BglII AGATCT 1 cut(s) 351
BisI GCNGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 508
Bme18I GGWCC 1 cut(s) 481
BmgBI CACGTC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 3 cut(s) 49, 404, 483
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 421
BsaAI YACGTR 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 404, 517
BseLI CCNNNNNNNGG 1 cut(s) 284
BseNI ACTGG 2 cut(s) 404, 517
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 493
BshFI GGCC 2 cut(s) 58, 497
BsiHKAI GWGCWC 2 cut(s) 81, 369
BslFI GGGAC 2 cut(s) 447, 467
BslI CCNNNNNNNGG 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 447, 467
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 2 cut(s) 58, 497
Bsp1286I GDGCHC 2 cut(s) 81, 369
Bsp1407I TGTACA 1 cut(s) 418
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 58, 497
BspLI GGNNCC 3 cut(s) 49, 404, 483
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 2 cut(s) 404, 517
BssMI GATC 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 418
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 118, 169, 529
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 146, 503
BstNSI RCATGY 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 81
BstSNI TACGTA 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 58, 497
BtrI CACGTC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 37, 419
CviAII CATG 3 cut(s) 44, 422, 537
CviJI RGCY 6 cut(s) 48, 58, 281, 405, 497, 528
CviKI_1 RGCY 6 cut(s) 48, 58, 281, 405, 497, 528
CviQI GTAC 2 cut(s) 37, 419
DdeI CTNAG 3 cut(s) 118, 169, 529
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco105I TACGTA 1 cut(s) 36
Eco147I AGGCCT 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 3 cut(s) 47, 425, 540
FaiI YATR 9 cut(s) 17, 33, 41, 45, 202, 275, 423, 470, 538
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 2 cut(s) 447, 467
FatI CATG 3 cut(s) 43, 421, 536
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 507
FspBI CTAG 3 cut(s) 146, 371, 443
GluI GCNGC 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 2 cut(s) 58, 497
Hin1II CATG 3 cut(s) 47, 425, 540
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 2 cut(s) 260, 382
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 3 cut(s) 73, 79, 124
Hpy188III TCNNGA 3 cut(s) 27, 355, 490
Hpy8I GTNNAC 3 cut(s) 73, 79, 124
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 487
HpyCH4IV ACGT 3 cut(s) 35, 75, 460
HpyCH4V TGCA 3 cut(s) 79, 107, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 503
HpyF3I CTNAG 3 cut(s) 118, 169, 529
HpySE526I ACGT 3 cut(s) 35, 75, 460
Hsp92II CATG 3 cut(s) 47, 425, 540
Kzo9I GATC 1 cut(s) 351
LmnI GCTCC 3 cut(s) 53, 372, 402
LpnPI CCDG 6 cut(s) 291, 375, 385, 419, 475, 498
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 208
MaeI CTAG 3 cut(s) 146, 371, 443
MaeII ACGT 3 cut(s) 35, 75, 460
MaeIII GTNAC 5 cut(s) 250, 322, 379, 388, 395
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 121, 256
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 2 cut(s) 81, 369
MluCI AATT 2 cut(s) 22, 455
MlyI GAGTC 2 cut(s) 269, 376
Mph1103I ATGCAT 1 cut(s) 223
MseI TTAA 4 cut(s) 93, 174, 309, 450
Mva1269I GAATGC 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 146, 503
NdeII GATC 1 cut(s) 351
NlaIII CATG 3 cut(s) 47, 425, 540
NlaIV GGNNCC 3 cut(s) 49, 404, 483
NmuCI GTSAC 1 cut(s) 379
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 540
PceI AGGCCT 1 cut(s) 497
PciI ACATGT 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 508
PleI GAGTC 2 cut(s) 268, 376
PpsI GAGTC 2 cut(s) 268, 376
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 49, 404, 483
PspPI GGNCC 1 cut(s) 481
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 2 cut(s) 38, 420
RsaNI GTAC 2 cut(s) 37, 419
SaqAI TTAA 4 cut(s) 93, 174, 309, 450
SatI GCNGC 1 cut(s) 507
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 2 cut(s) 269, 376
SduI GDGCHC 2 cut(s) 81, 369
SetI ASST 6 cut(s) 38, 78, 283, 364, 463, 530
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 481
SnaBI TACGTA 1 cut(s) 36
Sse9I AATT 2 cut(s) 22, 455
SseBI AGGCCT 1 cut(s) 497
SsiI CCGC 1 cut(s) 180
SspMI CTAG 3 cut(s) 146, 371, 443
StuI AGGCCT 1 cut(s) 497
TaiI ACGT 3 cut(s) 38, 78, 463
TaqI TCGA 1 cut(s) 26
TasI AATT 2 cut(s) 22, 455
TatI WGTACW 1 cut(s) 418
Tru1I TTAA 4 cut(s) 93, 174, 309, 450
Tru9I TTAA 4 cut(s) 93, 174, 309, 450
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 78, 403, 485
TspGWI ACGGA 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 481
XceI RCATGY 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 3 cut(s) 146, 371, 443
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.