AT4G35987

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009234
Physical Location & Seq
Forward (+)
17034959 .. 17037322
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35987.1

Sequence Viewer

Length: 915 bp
ATGGATCCCACTTCTTCTTCTTCCTCTGCTCTTAGATGGAAAATTCTTCGCCAAGCGCTTCTCCGTAGATCTGATTCTCAATCTCAAACTGAGACCAAACGGATTTCAAGGAAAGCAACTCAAGGATTCAACTTGATTCCTTGTCAAGTGGTGGACTCTTCTCCTCAATCGGATAAGTCTCGTGAAGCATCCGTTTGCTACACACTTCCCATCACTGGCTCTCCCAAACTCTATCTAACACAAAGAGTGGATAATTGTAGTGATCTCAATGACTTCGAGATATCTAATCGATACAACATTGATAATACTGGACTTGTCTGTCAGTGGCCCTCTGAAGAAGTACTAGCCTACTTTTGCAAGTCTCAGCCAGAACGTTTCAGAGGTAAAAGAGTAATTGAGCTTGGATCAGGGTATGGATTAGCCGGTTTAGTTATTGCAGCTGCAACCGAGGCATCAGAAGTGGTAATCTCCGATGGAAACCCCCAAGTAGTCAATTATATTAAACGTAACATAGAAACCAACTCCATGGCATTTGGTGGCACAAGCGTAAAAGCCATGGAGTTGCACTGGAATCAGCATCAACTTTCAGAGTTAACCAACACTTTCGACATCATAGTTGCAAGCGATTGTACATTTTTCAAGGAATTTCATAAGGACCTTGCGAGAACCATCAAGATGCTGCTTAAAGCCAAAAAAGCCTCCGAAGCATTATTTTTCAGTCCTAAGAGAGGTGACTCCTTGGAAAAGTTCATGAAGGAGATTAAGGACATTGGTTTACACTACATTTTAACTGAAAACTACGATGCACAAGTTTGGAAGCGCCATGAGACGCTTGTGAAAGGAGACGAAGCTTGGCCTAACTATGACAAGAATCATTGCTACCCTTTACTTATTCAAATTACTAATCAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

304

Amino Acids

34.49

Weight (kDa)

8.08

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 109 - 255 6.2e-25 Lysine methyltransferase
MTS PF05175 127 - 207 7.8e-07 Methyltransferase small domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 318
AclI AACGTT 1 cut(s) 373
AclWI GGATC 2 cut(s) 12, 412
AcsI RAATTY 2 cut(s) 42, 644
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 2 cut(s) 342, 631
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 215, 728
AgsI TTSAA 4 cut(s) 108, 130, 640, 896
AluBI AGCT 3 cut(s) 400, 440, 851
AluI AGCT 3 cut(s) 400, 440, 851
Alw26I GTCTC 5 cut(s) 86, 183, 366, 821, 837
AlwI GGATC 2 cut(s) 12, 412
Aor51HI AGCGCT 1 cut(s) 57
AoxI GGCC 2 cut(s) 326, 854
ApeKI GCWGC 3 cut(s) 437, 440, 679
ApoI RAATTY 2 cut(s) 42, 644
AspLEI GCGC 2 cut(s) 58, 822
AspS9I GGNCC 2 cut(s) 327, 655
AsuHPI GGTGA 1 cut(s) 743
AvaII GGWCC 1 cut(s) 655
BamHI GGATCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 180
BbvI GCAGC 3 cut(s) 427, 449, 666
BccI CCATC 4 cut(s) 30, 218, 467, 677
BcoDI GTCTC 5 cut(s) 86, 183, 366, 821, 837
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 2 cut(s) 59, 823
BglII AGATCT 1 cut(s) 68
BisI GCNGC 3 cut(s) 438, 441, 680
BlsI GCNGC 3 cut(s) 439, 442, 681
BmcAI AGTACT 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 655
BmgT120I GGNCC 2 cut(s) 327, 655
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 5 cut(s) 197, 461, 586, 666, 793
BpuEI CTTGAG 1 cut(s) 105
Bsa29I ATCGAT 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 4 cut(s) 447, 525, 555, 738
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 728
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 3 cut(s) 220, 313, 572
Bse3DI GCAATG 1 cut(s) 874
BseCI ATCGAT 1 cut(s) 289
BseDI CCNNGG 4 cut(s) 447, 525, 555, 738
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 2 cut(s) 215, 728
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 81, 377
BseNI ACTGG 3 cut(s) 220, 313, 572
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 427, 449, 666
BshFI GGCC 2 cut(s) 328, 856
BshVI ATCGAT 1 cut(s) 289
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 2 cut(s) 215, 728
BsmAI GTCTC 5 cut(s) 86, 183, 366, 821, 837
BsmBI CGTCTC 2 cut(s) 821, 837
BsnI GGCC 2 cut(s) 328, 856
Bso31I GGTCTC 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 629
Bsp143I GATC 4 cut(s) 4, 68, 262, 404
Bsp19I CCATGG 2 cut(s) 525, 555
BspANI GGCC 2 cut(s) 328, 856
BspCNI CTCAG 2 cut(s) 82, 376
BspDI ATCGAT 1 cut(s) 289
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 412
BspTNI GGTCTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 874
BsrFI RCCGGY 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 629
BsrI ACTGG 3 cut(s) 220, 313, 572
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 4 cut(s) 447, 525, 555, 738
BssMI GATC 4 cut(s) 4, 68, 262, 404
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 3 cut(s) 525, 555, 738
Bst2BI CACGAG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 622
BstDEI CTNAG 4 cut(s) 32, 90, 363, 723
BstDSI CCRYGG 2 cut(s) 525, 555
BstENI CCTNNNNNAGG 1 cut(s) 726
BstF5I GGATG 1 cut(s) 188
BstH2I RGCGCY 2 cut(s) 59, 823
BstHHI GCGC 2 cut(s) 58, 822
BstKTI GATC 4 cut(s) 7, 71, 265, 407
BstMAI GTCTC 5 cut(s) 86, 183, 366, 821, 837
BstMBI GATC 4 cut(s) 4, 68, 262, 404
BstMWI GCNNNNNNNGC 3 cut(s) 449, 695, 704
BstV1I GCAGC 3 cut(s) 427, 449, 666
BstX2I RGATCY 2 cut(s) 4, 68
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 2 cut(s) 4, 68
Bsu15I ATCGAT 1 cut(s) 289
BsuRI GGCC 2 cut(s) 328, 856
BsuTUI ATCGAT 1 cut(s) 289
BtgI CCRYGG 2 cut(s) 525, 555
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 3 cut(s) 213, 329, 565
Cac8I GCNNGC 1 cut(s) 622
CciI TCATGA 1 cut(s) 750
CfoI GCGC 2 cut(s) 58, 822
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 327, 655
ClaI ATCGAT 1 cut(s) 289
CseI GACGC 1 cut(s) 838
Csp6I GTAC 2 cut(s) 341, 630
CviAII CATG 4 cut(s) 526, 556, 751, 824
CviQI GTAC 2 cut(s) 341, 630
DdeI CTNAG 4 cut(s) 32, 90, 363, 723
DpnI GATC 4 cut(s) 6, 70, 264, 406
DpnII GATC 4 cut(s) 4, 68, 262, 404
DrdI GACNNNNNNGTC 1 cut(s) 318
DseDI GACNNNNNNGTC 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 525, 555, 738
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 282
Eco47I GGWCC 1 cut(s) 655
Eco47III AGCGCT 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 726
EcoO109I RGGNCCY 1 cut(s) 655
EcoRV GATATC 1 cut(s) 282
EcoT14I CCWWGG 3 cut(s) 525, 555, 738
ErhI CCWWGG 3 cut(s) 525, 555, 738
Esp3I CGTCTC 2 cut(s) 821, 837
FaeI CATG 4 cut(s) 529, 559, 754, 827
FatI CATG 4 cut(s) 525, 555, 750, 823
Fnu4HI GCNGC 3 cut(s) 438, 441, 680
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 3 cut(s) 438, 441, 680
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 57, 821
GluI GCNGC 3 cut(s) 438, 441, 680
HaeII RGCGCY 2 cut(s) 59, 823
HaeIII GGCC 2 cut(s) 328, 856
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 838
HhaI GCGC 2 cut(s) 58, 822
Hin1II CATG 4 cut(s) 529, 559, 754, 827
Hin6I GCGC 2 cut(s) 56, 820
HinP1I GCGC 2 cut(s) 56, 820
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 7 cut(s) 74, 126, 136, 155, 571, 734, 871
HpaI GTTAAC 1 cut(s) 594
HpaII CCGG 1 cut(s) 423
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 3 cut(s) 154, 594, 776
Hpy188I TCNGA 9 cut(s) 73, 172, 334, 380, 457, 472, 589, 703, 909
Hpy188III TCNNGA 4 cut(s) 182, 277, 673, 751
Hpy8I GTNNAC 3 cut(s) 154, 594, 776
HpyAV CCTTC 1 cut(s) 748
HpyCH4IV ACGT 2 cut(s) 373, 505
HpyCH4V TGCA 6 cut(s) 357, 437, 443, 565, 620, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 449, 695, 704
HpyF3I CTNAG 4 cut(s) 32, 90, 363, 723
HpySE526I ACGT 2 cut(s) 373, 505
Hsp92II CATG 4 cut(s) 529, 559, 754, 827
HspAI GCGC 2 cut(s) 56, 820
KspAI GTTAAC 1 cut(s) 594
Kzo9I GATC 4 cut(s) 4, 68, 262, 404
LpnPI CCDG 6 cut(s) 201, 294, 381, 393, 436, 553
Lsp1109I GCAGC 3 cut(s) 427, 449, 666
LweI GCATC 5 cut(s) 197, 461, 586, 666, 793
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 373, 505
MaeIII GTNAC 2 cut(s) 506, 731
MalI GATC 4 cut(s) 6, 70, 264, 406
MboI GATC 4 cut(s) 4, 68, 262, 404
MboII GAAGA 6 cut(s) 6, 9, 12, 38, 150, 347
MflI RGATCY 2 cut(s) 4, 68
MluCI AATT 6 cut(s) 42, 253, 393, 493, 644, 897
MlyI GAGTC 2 cut(s) 149, 728
MnlI CCTC 7 cut(s) 34, 174, 340, 374, 442, 709, 722
MseI TTAA 5 cut(s) 501, 593, 684, 762, 788
MslI CAYNNNNRTG 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 1 cut(s) 423
MwoI GCNNNNNNNGC 3 cut(s) 449, 695, 704
NcoI CCATGG 2 cut(s) 525, 555
NdeII GATC 4 cut(s) 4, 68, 262, 404
NlaIII CATG 4 cut(s) 529, 559, 754, 827
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 731
PagI TCATGA 1 cut(s) 750
PfeI GAWTC 5 cut(s) 74, 126, 136, 571, 871
PkrI GCNGC 3 cut(s) 439, 442, 681
PleI GAGTC 2 cut(s) 149, 728
PpsI GAGTC 2 cut(s) 149, 728
PpuMI RGGWCCY 1 cut(s) 655
Psp1406I AACGTT 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 655
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 327, 655
PspPPI RGGWCCY 1 cut(s) 655
PsuI RGATCY 2 cut(s) 4, 68
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 2 cut(s) 342, 631
RsaNI GTAC 2 cut(s) 341, 630
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 5 cut(s) 501, 593, 684, 762, 788
SatI GCNGC 3 cut(s) 438, 441, 680
Sau3AI GATC 4 cut(s) 4, 68, 262, 404
Sau96I GGNCC 2 cut(s) 327, 655
ScaI AGTACT 1 cut(s) 342
SchI GAGTC 2 cut(s) 149, 728
SetI ASST 8 cut(s) 376, 385, 402, 442, 508, 660, 733, 853
SfaNI GCATC 5 cut(s) 197, 461, 586, 666, 793
SinI GGWCC 1 cut(s) 655
SmiMI CAYNNNNRTG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 6 cut(s) 42, 253, 393, 493, 644, 897
SspMI CTAG 1 cut(s) 344
StyI CCWWGG 3 cut(s) 525, 555, 738
TaiI ACGT 2 cut(s) 376, 508
TaqI TCGA 3 cut(s) 276, 289, 606
TasI AATT 6 cut(s) 42, 253, 393, 493, 644, 897
TatI WGTACW 2 cut(s) 340, 629
TfiI GAWTC 5 cut(s) 74, 126, 136, 571, 871
Tru1I TTAA 5 cut(s) 501, 593, 684, 762, 788
Tru9I TTAA 5 cut(s) 501, 593, 684, 762, 788
TscAI CASTG 3 cut(s) 220, 329, 572
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 3 cut(s) 437, 440, 679
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 3 cut(s) 638, 739, 767
TspGWI ACGGA 3 cut(s) 53, 115, 181
TspRI CASTG 3 cut(s) 220, 329, 572
VpaK11BI GGWCC 1 cut(s) 655
XagI CCTNNNNNAGG 1 cut(s) 726
XapI RAATTY 2 cut(s) 42, 644
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.