Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009234

Physical Location & Seq

Genomic Coordinates Forward (+)

6393928 .. 6396640

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11701.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAAACCGGAGCAGCAACCACGGCAAAGGCCTCATCTCTCCGATGGAAAATTCTCCGTCAAGCCCTTCTCCGCAAACCAACAGATGAGCAATCTGCAATTGGGGTCAAGCGAATCACGAGGAAGACGACGCAAGGCTTCAACTTGATACCCACCAACCTTGTTCAAGACCCAACTAACTTAACCGACGCAACTGTCTGCTACACCTTGCCCATTGACTCTGCTCCCAAGCTTTACATCAATCAACGAGTGGTTGACCGAGCTGAGCTTAGTGACTTTGAGATTTGCAATCAGTACAATATTGACAACACTGGGCTTGTTTGTCAGTGGCCATCAGAAGAGGCACTCGCGTATTTTTGCTTGAAGAATGCAGACATGTTCAGGTCTAAGAGAGTGATTGAACTTGGGGCGGGATATGGATTAGCTGGTTTAGTTATTGCAGCAGTTACAGATGCATCAGAAGTTGTGATTTCAGATGGAAATCCCCAAGTAGTTGATTATATTCAGCGCAATATTGATGCCAACTCTAAAGCATTTGGGGGTACAAGAGTGAAGGCTATGATGTTGCATTGGGATCAGACCGGAAATTCAAATATCTCTGGCACTTTTGATCTCATTGTTGCGAGTGACTGCACATTTTTTAAGGACTTCCACAATGGACTTGCTCAAATTGTCAAATTCTTGTTGGAAAAAGTGCGGCCCTCTGAAGCTATATTCTTCAGTCCTAAAAGAGGAGACTCCTTAGATAAGTTCCTAGAGAAAATCAAAGAAAGTAATTTGTGCTTCAGCATAACAGAAAATTATGATGCTGAAATTTGGAAACGTCATAACCAGCTTATGAATGGTGATGGTTCCTGGCCCAGCTATGAAAAAGATCACTGTTATCCCTTGTTAGTCAGGATTGCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

304

Amino Acids

33.93

Weight (kDa)

6.13

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	110 - 257	1.1e-21	Lysine methyltransferase
MTS	PF05175	124 - 207	4e-06	Methyltransferase small domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35987
fragaria_vesca	FvH4_1g11701
malus_domestica	MD02G1130100.v1.1 MD15G1244100.v1.1
prunus_persica	Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099281
rosa_laevigata	RLG00000016868
rosa_multiflora	Rmu_sc0002025.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143250
rosa_rugosa	Rorug02G0078400
rosa_samantha	Rh2AG127700 Rh2BG130700 Rh2CG131900 Rh2DG132400
rosa_wichuraiana	Rw2G009860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccII	CGCG	1 cut(s)	350
AciI	CCGC	3 cut(s)	73, 410, 697
AclWI	GGATC	1 cut(s)	582
AcoI	YGGCCR	1 cut(s)	329
AcsI	RAATTY	4 cut(s)	51, 586, 677, 813
AcuI	CTGAAG	3 cut(s)	703, 726, 769
AfaI	GTAC	2 cut(s)	296, 544
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	5 cut(s)	142, 167, 364, 401, 591
AjnI	CCWGG	1 cut(s)	854
AluBI	AGCT	7 cut(s)	232, 263, 268, 425, 710, 835, 864
AluI	AGCT	7 cut(s)	232, 263, 268, 425, 710, 835, 864
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	4 cut(s)	30, 329, 698, 857
ApeKI	GCWGC	2 cut(s)	14, 440
ApoI	RAATTY	4 cut(s)	51, 586, 677, 813
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	699, 858
AsuHPI	GGTGA	1 cut(s)	857
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BalI	TGGCCA	1 cut(s)	331
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	26, 452
BccI	CCATC	4 cut(s)	39, 340, 470, 842
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	856
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	1 cut(s)	755
BisI	GCNGC	3 cut(s)	15, 441, 698
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	3 cut(s)	16, 442, 699
Bme1390I	CCNGG	1 cut(s)	856
BmgT120I	GGNCC	2 cut(s)	699, 858
BmiI	GGNNCC	1 cut(s)	853
BmrFI	CCNGG	1 cut(s)	856
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	4 cut(s)	442, 464, 508, 796
BmuI	ACTGGG	1 cut(s)	321
BpiI	GAAGAC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	2 cut(s)	8, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	856
BseDI	CCNNGG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	747
BseXI	GCAGC	2 cut(s)	26, 452
BseYI	CCCAGC	1 cut(s)	860
BsgI	GTGCAG	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	350
BshFI	GGCC	4 cut(s)	32, 331, 700, 859
BsiSI	CCGG	2 cut(s)	9, 582
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	729
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	4 cut(s)	32, 331, 700, 859
Bsp143I	GATC	3 cut(s)	574, 610, 874
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	3 cut(s)	73, 410, 697
BspANI	GGCC	4 cut(s)	32, 331, 700, 859
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	853
BspPI	GGATC	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	3 cut(s)	574, 610, 874
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	856
Bst4CI	ACNGT	2 cut(s)	196, 881
Bst6I	CTCTTC	1 cut(s)	333
BstDEI	CTNAG	4 cut(s)	264, 269, 387, 742
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	729
BstFNI	CGCG	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	510
BstKTI	GATC	3 cut(s)	577, 613, 877
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	3 cut(s)	574, 610, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	856
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	854
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	26, 452
BstV2I	GAAGAC	1 cut(s)	131
BsuRI	GGCC	4 cut(s)	32, 331, 700, 859
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	309, 332, 877
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	699, 858
CseI	GACGC	2 cut(s)	139, 197
Csp6I	GTAC	2 cut(s)	295, 543
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	2 cut(s)	295, 543
DdeI	CTNAG	4 cut(s)	264, 269, 387, 742
DpnI	GATC	3 cut(s)	576, 612, 876
DpnII	GATC	3 cut(s)	574, 610, 874
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	329
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	32
Eco57I	CTGAAG	3 cut(s)	703, 726, 769
EcoNI	CCTNNNNNAGG	1 cut(s)	729
EcoRII	CCWGG	1 cut(s)	854
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	1 cut(s)	379
FatI	CATG	1 cut(s)	375
FauI	CCCGC	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	15, 441, 698
Fsp4HI	GCNGC	3 cut(s)	15, 441, 698
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	3 cut(s)	15, 441, 698
GsaI	CCCAGC	1 cut(s)	864
HaeIII	GGCC	4 cut(s)	32, 331, 700, 859
HapII	CCGG	2 cut(s)	9, 582
HgaI	GACGC	2 cut(s)	139, 197
HhaI	GCGC	1 cut(s)	510
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	114, 218, 737
HpaII	CCGG	2 cut(s)	9, 582
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	6 cut(s)	44, 337, 460, 475, 579, 706
Hpy188III	TCNNGA	3 cut(s)	118, 167, 898
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	133, 191
HpyAV	CCTTC	2 cut(s)	77, 547
HpyCH4III	ACNGT	2 cut(s)	196, 881
HpyCH4IV	ACGT	1 cut(s)	823
HpyCH4V	TGCA	7 cut(s)	98, 288, 371, 440, 455, 568, 633
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	264, 269, 387, 742
HpySE526I	ACGT	1 cut(s)	823
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	574, 610, 874
LmnI	GCTCC	2 cut(s)	11, 229
Lsp1109I	GCAGC	2 cut(s)	26, 452
LweI	GCATC	4 cut(s)	442, 464, 508, 796
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	1 cut(s)	823
MaeIII	GTNAC	3 cut(s)	272, 445, 626
MalI	GATC	3 cut(s)	576, 612, 876
MboI	GATC	3 cut(s)	574, 610, 874
MboII	GAAGA	4 cut(s)	136, 350, 376, 709
MfeI	CAATTG	1 cut(s)	99
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	8 cut(s)	51, 99, 586, 669, 677, 775, 799, 813
MluNI	TGGCCA	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	212, 731
MmeI	TCCRAC	1 cut(s)	666
MnlI	CCTC	5 cut(s)	43, 114, 334, 712, 725
Mox20I	TGGCCA	1 cut(s)	331
Mph1103I	ATGCAT	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	2 cut(s)	182, 642
Msp20I	TGGCCA	1 cut(s)	331
MspI	CCGG	2 cut(s)	9, 582
MspR9I	CCNGG	1 cut(s)	856
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	856
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	574, 610, 874
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	1 cut(s)	853
NmuCI	GTSAC	2 cut(s)	272, 626
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	32
PciI	ACATGT	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	16, 442, 699
PleI	GAGTC	2 cut(s)	212, 731
PpsI	GAGTC	2 cut(s)	212, 731
PscI	ACATGT	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	860
PspGI	CCWGG	1 cut(s)	854
PspN4I	GGNNCC	1 cut(s)	853
PspPI	GGNCC	2 cut(s)	699, 858
RsaI	GTAC	2 cut(s)	296, 544
RsaNI	GTAC	2 cut(s)	295, 543
SaqAI	TTAA	2 cut(s)	182, 642
SatI	GCNGC	3 cut(s)	15, 441, 698
Sau3AI	GATC	3 cut(s)	574, 610, 874
Sau96I	GGNCC	2 cut(s)	699, 858
SchI	GAGTC	2 cut(s)	212, 731
ScrFI	CCNGG	1 cut(s)	856
SfaNI	GCATC	4 cut(s)	442, 464, 508, 796
Sse9I	AATT	8 cut(s)	51, 99, 586, 669, 677, 775, 799, 813
SseBI	AGGCCT	1 cut(s)	32
SsiI	CCGC	3 cut(s)	73, 410, 697
SspI	AATATT	2 cut(s)	301, 514
SspMI	CTAG	1 cut(s)	755
StuI	AGGCCT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	854
TaaI	ACNGT	2 cut(s)	196, 881
TaiI	ACGT	1 cut(s)	826
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	8 cut(s)	51, 99, 586, 669, 677, 775, 799, 813
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	2 cut(s)	182, 642
Tru9I	TTAA	2 cut(s)	182, 642
TscAI	CASTG	3 cut(s)	316, 332, 884
TseFI	GTSAC	2 cut(s)	272, 626
TseI	GCWGC	2 cut(s)	14, 440
Tsp45I	GTSAC	2 cut(s)	272, 626
TspDTI	ATGAA	2 cut(s)	854, 882
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	316, 332, 884
XagI	CCTNNNNNAGG	1 cut(s)	729
XapI	RAATTY	4 cut(s)	51, 586, 677, 813
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XspI	CTAG	1 cut(s)	755
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.