Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009234

Physical Location & Seq

Genomic Coordinates Reverse (-)

81267277 .. 81271818

Gene Structure 4542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGTTCATGTCTTTCCTCCAGAACTGGCCGGAGTCATCAGTGGGGCTGAAGAAGTATCTTCTCCCTGAACCATTTCCCCACGGGAAGCGTCTATCATTTTCTGCAGAGGATGAAACAATTGCTACTACTCCAAAACCACCGAAACGACGCCGTATCCACTACTCTGTTCTGTGTGAAACGATGGAAACCGGAGCCCCAACCACGGCCAAACCCTCGTCTCTCCGATGGAAAATTCTCCGTCAAGCCCTTCTTCGCAAACCAACCGCAGATGAGCAATCTGCAATTGGGGTCAAGCGAATCACGAGGAAGACGACTCAAGGCTTCAACTTGATACCCTCTAATCTCGTTGAAGACCACCCAACTAACTCAACCGACGCAACTGTCTGCTACACCATCCCCATTGACTCTGCTCCCAAGCTTTACCTCACTCAACGAGTGATTGACCGTGCTGAGCTCAGTGACTTTGAGATTTGCAATCAGTACAATATTGACAATACTGGGCTTGTTTGTCAGTGGCCATCAGAAGAGGCTCTTGCGTATTTTTGCTTGCAGAATGCAGACATGTTCAGGTCTAAGAGTGTGATTGAGCTTGGGGCAGGATATGGATTAGCTGGTCTAGTTATTGCAGCAGTTACAGAGGCATCGGAAGTTGTGATTTCTGACGGAAATCCCCAAGTAGTTGATTATATTCAGCGCAATATTGATGCCAACTCAAAAGCATTTGGTGGTACAAGAGTGAAGTCTATGATGTTGCATTGGAATCAGAATGAAAAATCAAATATCTCTAGCACTTTTGATCTCATTGTTGCGAGTGACTGCACCTTCTTTAAGGAATTCCACAATGGACTTGCACAAATTGTCAAATTCTTGTTGGAAAAAGTGCGGCCTGCTGAAGCTATATTCTTCAGTCCTAAAAGAGGAGACTCCTTAGACAAGTTCCTAGAGAAAATCAAAGAAAGTAATTTGTGCTTCAGCATAACAGAAAATTATGACACAGAAATTTGGAAGCGCCATAACCAGCTTATGAATGGTGATGGTTCCTGGCCCAGCTACGAAAAAGATCACTGCTATCCCTTATTGGTCAGGATTGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

365

Amino Acids

41.25

Weight (kDa)

6.67

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	172 - 319	7.3e-22	Lysine methyltransferase
MTS	PF05175	184 - 269	9.8e-06	Methyltransferase small domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35987
fragaria_vesca	FvH4_1g11701
malus_domestica	MD02G1130100.v1.1 MD15G1244100.v1.1
prunus_persica	Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099281
rosa_laevigata	RLG00000016868
rosa_multiflora	Rmu_sc0002025.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143250
rosa_rugosa	Rorug02G0078400
rosa_samantha	Rh2AG127700 Rh2BG130700 Rh2CG131900 Rh2DG132400
rosa_wichuraiana	Rw2G009860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
AciI	CCGC	2 cut(s)	264, 883
AcoI	YGGCCR	3 cut(s)	26, 204, 515
AcsI	RAATTY	4 cut(s)	231, 833, 863, 999
AcuI	CTGAAG	4 cut(s)	68, 889, 912, 955
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	2 cut(s)	482, 730
AfiI	CCNNNNNNNGG	2 cut(s)	202, 917
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	2 cut(s)	325, 350
AjnI	CCWGG	1 cut(s)	1040
AluBI	AGCT	7 cut(s)	418, 454, 589, 611, 896, 1021, 1050
AluI	AGCT	7 cut(s)	418, 454, 589, 611, 896, 1021, 1050
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	2 cut(s)	222, 915
AoxI	GGCC	5 cut(s)	26, 204, 515, 884, 1043
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	4 cut(s)	231, 833, 863, 999
Asp700I	GAANNNNTTC	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	696, 1011
AspS9I	GGNCC	1 cut(s)	1044
AsuHPI	GGTGA	1 cut(s)	1043
BaeI	ACNNNNGTAYC	2 cut(s)	720, 753
BalI	TGGCCA	1 cut(s)	517
BanII	GRGCYC	2 cut(s)	196, 456
BauI	CACGAG	1 cut(s)	301
BbsI	GAAGAC	2 cut(s)	314, 357
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	5 cut(s)	175, 219, 401, 526, 1028
BceAI	ACGGC	2 cut(s)	135, 219
BciT130I	CCWGG	1 cut(s)	1042
BciVI	GTATCC	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	222, 915
BfaI	CTAG	3 cut(s)	617, 786, 941
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	1012
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	627, 884
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	2 cut(s)	628, 885
Bme1390I	CCNGG	1 cut(s)	1042
BmgT120I	GGNCC	1 cut(s)	1044
BmiI	GGNNCC	2 cut(s)	193, 1039
BmrFI	CCNGG	1 cut(s)	1042
BmrI	ACTGGG	1 cut(s)	507
BmsI	GCATC	2 cut(s)	650, 694
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	2 cut(s)	314, 357
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	79, 201
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 917
Bse1I	ACTGG	2 cut(s)	29, 502
BseBI	CCWGG	1 cut(s)	1042
BseDI	CCNNGG	2 cut(s)	79, 201
BseGI	GGATG	2 cut(s)	115, 393
BseLI	CCNNNNNNNGG	2 cut(s)	202, 917
BseMII	CTCAG	2 cut(s)	441, 469
BseNI	ACTGG	2 cut(s)	29, 502
BseRI	GAGGAG	1 cut(s)	933
BseXI	GCAGC	1 cut(s)	638
BseYI	CCCAGC	1 cut(s)	1046
BsgI	GTGCAG	1 cut(s)	802
BshFI	GGCC	5 cut(s)	28, 206, 517, 886, 1045
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	2 cut(s)	29, 189
BslI	CCNNNNNNNGG	2 cut(s)	202, 917
BsmAI	GTCTC	2 cut(s)	222, 915
BsmBI	CGTCTC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	5 cut(s)	28, 206, 517, 886, 1045
Bsp1286I	GDGCHC	2 cut(s)	196, 456
Bsp143I	GATC	2 cut(s)	796, 1060
Bsp1720I	GCTNAGC	1 cut(s)	450
BspACI	CCGC	2 cut(s)	264, 883
BspANI	GGCC	5 cut(s)	28, 206, 517, 886, 1045
BspCNI	CTCAG	2 cut(s)	442, 468
BspLI	GGNNCC	2 cut(s)	193, 1039
BspMAI	CTGCAG	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	29, 502
BssECI	CCNNGG	2 cut(s)	79, 201
BssMI	GATC	2 cut(s)	796, 1060
BssNI	GRCGYC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	301
Bst2BI	CACGAG	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	1042
Bst4CI	ACNGT	2 cut(s)	382, 446
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	548, 888
BstDEI	CTNAG	4 cut(s)	450, 455, 573, 928
BstDSI	CCRYGG	2 cut(s)	79, 201
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	2 cut(s)	115, 393
BstH2I	RGCGCY	1 cut(s)	1012
BstHHI	GCGC	2 cut(s)	696, 1011
BstKTI	GATC	2 cut(s)	799, 1063
BstMAI	GTCTC	2 cut(s)	222, 915
BstMBI	GATC	2 cut(s)	796, 1060
BstNI	CCWGG	1 cut(s)	1042
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	1040
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	638
BstV2I	GAAGAC	2 cut(s)	314, 357
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	5 cut(s)	28, 206, 517, 886, 1045
BtgI	CCRYGG	2 cut(s)	79, 201
BtsCI	GGATG	2 cut(s)	115, 393
BtsI	GCAGTG	1 cut(s)	1063
BtsIMutI	CAGTG	4 cut(s)	45, 463, 518, 1063
Cac8I	GCNNGC	2 cut(s)	548, 888
CfoI	GCGC	2 cut(s)	696, 1011
Cfr13I	GGNCC	1 cut(s)	1044
CseI	GACGC	3 cut(s)	77, 156, 383
Csp6I	GTAC	2 cut(s)	481, 729
CviAII	CATG	2 cut(s)	7, 562
CviQI	GTAC	2 cut(s)	481, 729
DdeI	CTNAG	4 cut(s)	450, 455, 573, 928
DpnI	GATC	2 cut(s)	798, 1062
DpnII	GATC	2 cut(s)	796, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	3 cut(s)	26, 204, 515
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	2 cut(s)	196, 456
Eco53kI	GAGCTC	1 cut(s)	454
Eco57I	CTGAAG	4 cut(s)	68, 889, 912, 955
EcoICRI	GAGCTC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	833
EcoRII	CCWGG	1 cut(s)	1040
EcoT38I	GRGCYC	2 cut(s)	196, 456
Esp3I	CGTCTC	1 cut(s)	222
FaeI	CATG	2 cut(s)	10, 565
FalI	AAGNNNNNCTT	4 cut(s)	234, 266, 516, 548
FatI	CATG	2 cut(s)	6, 561
Fnu4HI	GCNGC	2 cut(s)	627, 884
FokI	GGATG	2 cut(s)	122, 380
FriOI	GRGCYC	2 cut(s)	196, 456
Fsp4HI	GCNGC	2 cut(s)	627, 884
FspBI	CTAG	3 cut(s)	617, 786, 941
GlaI	GCGC	2 cut(s)	695, 1010
GluI	GCNGC	2 cut(s)	627, 884
GsaI	CCCAGC	1 cut(s)	1050
HaeII	RGCGCY	1 cut(s)	1012
HaeIII	GGCC	5 cut(s)	28, 206, 517, 886, 1045
HapII	CCGG	2 cut(s)	29, 189
HgaI	GACGC	3 cut(s)	77, 156, 383
HhaI	GCGC	2 cut(s)	696, 1011
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	10, 565
Hin6I	GCGC	2 cut(s)	694, 1009
HinP1I	GCGC	2 cut(s)	694, 1009
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	6 cut(s)	32, 297, 313, 404, 760, 923
HpaII	CCGG	2 cut(s)	29, 189
HphI	GGTGA	1 cut(s)	1043
Hpy188I	TCNGA	5 cut(s)	224, 523, 646, 661, 765
Hpy188III	TCNNGA	3 cut(s)	19, 301, 1084
Hpy99I	CGWCG	2 cut(s)	150, 377
HpyAV	CCTTC	2 cut(s)	257, 832
HpyCH4III	ACNGT	2 cut(s)	382, 446
HpyF3I	CTNAG	4 cut(s)	450, 455, 573, 928
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	10, 565
HspAI	GCGC	2 cut(s)	694, 1009
Kzo9I	GATC	2 cut(s)	796, 1060
LmnI	GCTCC	2 cut(s)	191, 415
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	2 cut(s)	650, 694
MaeI	CTAG	3 cut(s)	617, 786, 941
MaeIII	GTNAC	3 cut(s)	458, 631, 812
MalI	GATC	2 cut(s)	798, 1062
MboI	GATC	2 cut(s)	796, 1060
MboII	GAAGA	7 cut(s)	50, 61, 242, 319, 362, 536, 895
MfeI	CAATTG	2 cut(s)	117, 282
MhlI	GDGCHC	2 cut(s)	196, 456
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	9 cut(s)	117, 231, 282, 833, 855, 863, 961, 985, 999
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	4 cut(s)	41, 307, 398, 917
MmeI	TCCRAC	1 cut(s)	852
MnlI	CCTC	9 cut(s)	26, 100, 223, 297, 346, 434, 520, 631, 911
Mox20I	TGGCCA	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	1 cut(s)	828
Msp20I	TGGCCA	1 cut(s)	517
MspI	CCGG	2 cut(s)	29, 189
MspR9I	CCNGG	1 cut(s)	1042
MunI	CAATTG	2 cut(s)	117, 282
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	1042
NdeII	GATC	2 cut(s)	796, 1060
NlaIII	CATG	2 cut(s)	10, 565
NlaIV	GGNNCC	2 cut(s)	193, 1039
NmuCI	GTSAC	2 cut(s)	458, 812
NspI	RCATGY	1 cut(s)	565
PciI	ACATGT	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PctI	GAATGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	297, 760
PkrI	GCNGC	2 cut(s)	628, 885
PleI	GAGTC	4 cut(s)	40, 307, 398, 917
PpsI	GAGTC	4 cut(s)	40, 307, 398, 917
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	1040
PspFI	CCCAGC	1 cut(s)	1046
PspGI	CCWGG	1 cut(s)	1040
PspN4I	GGNNCC	2 cut(s)	193, 1039
PspPI	GGNCC	1 cut(s)	1044
PstI	CTGCAG	1 cut(s)	106
RsaI	GTAC	2 cut(s)	482, 730
RsaNI	GTAC	2 cut(s)	481, 729
SacI	GAGCTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	2 cut(s)	627, 884
Sau3AI	GATC	2 cut(s)	796, 1060
Sau96I	GGNCC	1 cut(s)	1044
SchI	GAGTC	4 cut(s)	41, 307, 398, 917
ScrFI	CCNGG	1 cut(s)	1042
SduI	GDGCHC	2 cut(s)	196, 456
SfaNI	GCATC	2 cut(s)	650, 694
SfcI	CTRYAG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	9 cut(s)	117, 231, 282, 833, 855, 863, 961, 985, 999
SsiI	CCGC	2 cut(s)	264, 883
SspI	AATATT	2 cut(s)	487, 700
SspMI	CTAG	3 cut(s)	617, 786, 941
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	1040
TaaI	ACNGT	2 cut(s)	382, 446
TasI	AATT	9 cut(s)	117, 231, 282, 833, 855, 863, 961, 985, 999
TatI	WGTACW	1 cut(s)	480
TauI	GCSGC	1 cut(s)	886
TfiI	GAWTC	2 cut(s)	297, 760
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	4 cut(s)	45, 463, 518, 1070
TseFI	GTSAC	2 cut(s)	458, 812
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	2 cut(s)	458, 812
TspDTI	ATGAA	3 cut(s)	126, 783, 1040
TspGWI	ACGGA	2 cut(s)	227, 678
TspRI	CASTG	4 cut(s)	45, 463, 518, 1070
XagI	CCTNNNNNAGG	1 cut(s)	915
XapI	RAATTY	4 cut(s)	231, 833, 863, 999
XceI	RCATGY	1 cut(s)	565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1025
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	3 cut(s)	617, 786, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.