Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009234

Physical Location & Seq

Genomic Coordinates Reverse (-)

17207279 .. 17210538

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G169600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAAACTGGAACAAGTGGCAAGGCTTCGTCTCTCAGATGGAAAATTCTTCGTCAAGCTATTCTTCGCAAACCAAACGCAGATGAGCAATCTGAAATCGGCATTAAGCGAATTACGAGGAAGACGAAGCAGGGCTTCAACTTGTTACCATGCCATCTCGTTGACGACCCATCTCACTCGAGCGATGTTACCGTCTGCTACACCTTGCCCATTGACTCTGCTCCCAAGCTTTACCTAACTCAAAGAATGGTTGACCATGCTGAACTCAGTGACTTTGAGATTTGTAATAAGTACAATATTGACAACACTGGGCTTGTTTGTCAGTGGCCATCAGAAGAGGTTCTTGCGTACTTTTGCTTGTCACACGCAGACATGTTCAGGTCTAAGAGAGTAATTGAGCTTGGATCAGGCTATGGCTTAGCTGGTTTAGTTATTGCAGCAGTCACTGAGGCATCAGAAGTTGTAATTTCAGATGGAAATCCTCAAGTAGTTGATTATATTCAGCATAATATTGACGCCAACTCAAAAGCATTTGGTGGTACAAGAGTGAAGTCTATGATGTTGCATTGGAATCAGAACGAAATTTCAAATATCTCTAGCACTTTTGATCTCATTGTTGCCAGTGACTGCACTTTCTTCAAGGAATTCCACAATGGACTTGCTCAAATTGTCAAGTTCCTGTTGGGAAAAGTTCAGCCCTCGGAAGCTATATTTTTAAGTCCTAAAAGGGGCGACTCATTGGACAAGTTTCTAGAGAAAATCAAAGAAAATGATTTGCGCTTCAGCCTAAAAGAGAATTATGATGCAGAAATTTGGAAGCATCATACGGAGTTCATGAATGGTGCTGTTTCCTGGCCCAGCTACCAAAAAGATCACTGCTATCCCTTATTGATCAGAATTACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

303

Amino Acids

34.12

Weight (kDa)

6.21

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35987
fragaria_vesca	FvH4_1g11701
malus_domestica	MD02G1130100.v1.1 MD15G1244100.v1.1
prunus_persica	Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099281
rosa_laevigata	RLG00000016868
rosa_multiflora	Rmu_sc0002025.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143250
rosa_rugosa	Rorug02G0078400
rosa_samantha	Rh2AG127700 Rh2BG130700 Rh2CG131900 Rh2DG132400
rosa_wichuraiana	Rw2G009860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	326
AcsI	RAATTY	4 cut(s)	45, 582, 644, 810
AcuI	CTGAAG	1 cut(s)	766
AcyI	GRCGYC	1 cut(s)	516
AfaI	GTAC	3 cut(s)	293, 350, 541
AfiI	CCNNNNNNNGG	1 cut(s)	728
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	139, 588, 640
AjnI	CCWGG	1 cut(s)	851
AluBI	AGCT	6 cut(s)	59, 229, 400, 422, 707, 861
AluI	AGCT	6 cut(s)	59, 229, 400, 422, 707, 861
Alw26I	GTCTC	1 cut(s)	36
AlwI	GGATC	1 cut(s)	412
AlwNI	CAGNNNCTG	2 cut(s)	446, 627
Ama87I	CYCGRG	1 cut(s)	178
AoxI	GGCC	2 cut(s)	326, 854
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	4 cut(s)	45, 582, 644, 810
Asp700I	GAANNNNTTC	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	1 cut(s)	855
AvaI	CYCGRG	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	531, 564
BalI	TGGCCA	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	5 cut(s)	33, 162, 178, 337, 467
BciT130I	CCWGG	1 cut(s)	853
BclI	TGATCA	1 cut(s)	891
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	597, 752
BisI	GCNGC	1 cut(s)	438
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	855
BmrFI	CCNGG	1 cut(s)	853
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	3 cut(s)	461, 793, 829
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	477
BsaHI	GRCGYC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	3 cut(s)	13, 313, 621
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	853
BseDI	CCNNGG	1 cut(s)	699
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMII	CTCAG	3 cut(s)	49, 280, 438
BseNI	ACTGG	3 cut(s)	13, 313, 621
BseXI	GCAGC	1 cut(s)	449
BseYI	CCCAGC	1 cut(s)	857
BsgI	GTGCAG	1 cut(s)	613
BshFI	GGCC	2 cut(s)	328, 856
BsiHKCI	CYCGRG	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	1 cut(s)	36
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	328, 856
BsoBI	CYCGRG	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	404, 607, 871, 891
Bsp1720I	GCTNAGC	1 cut(s)	418
BspANI	GGCC	2 cut(s)	328, 856
BspCNI	CTCAG	3 cut(s)	48, 279, 439
BspHI	TCATGA	1 cut(s)	834
BspPI	GGATC	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	13, 313, 621
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	4 cut(s)	404, 607, 871, 891
BssNI	GRCGYC	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	853
Bst4CI	ACNGT	2 cut(s)	193, 904
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	516
BstDEI	CTNAG	5 cut(s)	35, 266, 384, 418, 447
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	4 cut(s)	407, 610, 874, 894
BstMAI	GTCTC	1 cut(s)	36
BstMBI	GATC	4 cut(s)	404, 607, 871, 891
BstNI	CCWGG	1 cut(s)	853
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	851
BstV1I	GCAGC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	328, 856
BtgZI	GCGATG	1 cut(s)	198
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	7 cut(s)	274, 306, 329, 444, 628, 874, 909
CaiI	CAGNNNCTG	2 cut(s)	446, 627
CciI	TCATGA	1 cut(s)	834
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	1 cut(s)	855
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	292, 349, 540
CviAII	CATG	4 cut(s)	150, 257, 373, 835
CviQI	GTAC	3 cut(s)	292, 349, 540
DdeI	CTNAG	5 cut(s)	35, 266, 384, 418, 447
DpnI	GATC	4 cut(s)	406, 609, 873, 893
DpnII	GATC	4 cut(s)	404, 607, 871, 891
EaeI	YGGCCR	1 cut(s)	326
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	766
Eco88I	CYCGRG	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	851
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	4 cut(s)	153, 260, 376, 838
FalI	AAGNNNNNCTT	6 cut(s)	48, 80, 119, 151, 327, 359
FatI	CATG	4 cut(s)	149, 256, 372, 834
FbaI	TGATCA	1 cut(s)	891
Fnu4HI	GCNGC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	2 cut(s)	597, 752
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	1 cut(s)	438
GsaI	CCCAGC	1 cut(s)	861
HaeIII	GGCC	2 cut(s)	328, 856
HgaI	GACGC	1 cut(s)	524
HhaI	GCGC	1 cut(s)	780
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	4 cut(s)	153, 260, 376, 838
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HincII	GTYRAC	2 cut(s)	163, 253
HindII	GTYRAC	2 cut(s)	163, 253
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	215, 571, 734
Hpy166II	GTNNAC	2 cut(s)	163, 253
Hpy188I	TCNGA	8 cut(s)	38, 94, 334, 457, 472, 576, 703, 896
Hpy188III	TCNNGA	2 cut(s)	752, 835
Hpy8I	GTNNAC	2 cut(s)	163, 253
HpyCH4III	ACNGT	2 cut(s)	193, 904
HpyCH4V	TGCA	4 cut(s)	437, 565, 630, 806
HpyF3I	CTNAG	5 cut(s)	35, 266, 384, 418, 447
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	4 cut(s)	153, 260, 376, 838
HspAI	GCGC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	891
Kzo9I	GATC	4 cut(s)	404, 607, 871, 891
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	3 cut(s)	461, 793, 829
MaeI	CTAG	2 cut(s)	597, 752
MaeIII	GTNAC	6 cut(s)	144, 187, 269, 360, 442, 623
MalI	GATC	4 cut(s)	406, 609, 873, 893
MboI	GATC	4 cut(s)	404, 607, 871, 891
MboII	GAAGA	5 cut(s)	41, 56, 133, 347, 628
MlsI	TGGCCA	1 cut(s)	328
MluNI	TGGCCA	1 cut(s)	328
MlyI	GAGTC	2 cut(s)	209, 728
MnlI	CCTC	5 cut(s)	111, 331, 442, 492, 709
Mox20I	TGGCCA	1 cut(s)	328
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	328
MseI	TTAA	2 cut(s)	105, 716
Msp20I	TGGCCA	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	853
MvaI	CCWGG	1 cut(s)	853
NdeII	GATC	4 cut(s)	404, 607, 871, 891
NlaIII	CATG	4 cut(s)	153, 260, 376, 838
NmuCI	GTSAC	4 cut(s)	269, 360, 442, 623
NspI	RCATGY	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	178
PagI	TCATGA	1 cut(s)	834
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	571
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	2 cut(s)	209, 728
PpsI	GAGTC	2 cut(s)	209, 728
PscI	ACATGT	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	851
PspFI	CCCAGC	1 cut(s)	857
PspGI	CCWGG	1 cut(s)	851
PspPI	GGNCC	1 cut(s)	855
PspXI	VCTCGAGB	1 cut(s)	178
PstNI	CAGNNNCTG	2 cut(s)	446, 627
RsaI	GTAC	3 cut(s)	293, 350, 541
RsaNI	GTAC	3 cut(s)	292, 349, 540
SaqAI	TTAA	2 cut(s)	105, 716
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	4 cut(s)	404, 607, 871, 891
Sau96I	GGNCC	1 cut(s)	855
SchI	GAGTC	2 cut(s)	209, 728
ScrFI	CCNGG	1 cut(s)	853
SfaNI	GCATC	3 cut(s)	461, 793, 829
Sfr274I	CTCGAG	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	178
SmlI	CTYRAG	2 cut(s)	178, 483
SmoI	CTYRAG	2 cut(s)	178, 483
SspI	AATATT	2 cut(s)	298, 511
SspMI	CTAG	2 cut(s)	597, 752
StyD4I	CCNGG	1 cut(s)	851
TaaI	ACNGT	2 cut(s)	193, 904
TaqI	TCGA	1 cut(s)	179
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	2 cut(s)	105, 716
Tru9I	TTAA	2 cut(s)	105, 716
TscAI	CASTG	7 cut(s)	274, 313, 329, 451, 628, 881, 909
TseFI	GTSAC	4 cut(s)	269, 360, 442, 623
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	4 cut(s)	269, 360, 442, 623
TspDTI	ATGAA	2 cut(s)	823, 851
TspGWI	ACGGA	1 cut(s)	842
TspRI	CASTG	7 cut(s)	274, 313, 329, 451, 628, 881, 909
XapI	RAATTY	4 cut(s)	45, 582, 644, 810
XbaI	TCTAGA	1 cut(s)	751
XceI	RCATGY	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	2 cut(s)	597, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.