Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009234

Physical Location & Seq

Genomic Coordinates Forward (+)

9965591 .. 9967649

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTTCAGGTCTAAGAGTGTGATTGAGCTTGGGGCAGGATATGGATTAGCTGGTCTAGTTATTGCAGCAGTTACAGAGGCATCGGAAGTTGTGATTTCTGACGGAAATCCCCAAGTAGTTGATTATATTCAGCGCAATATTGATGCCAACTCAAAAGCATTTGGTGGTACAAGAGTGAAGTCTATGATGTTGCATTGGAATCAGAATGAAAAATCAAATATCTCTAGCACTTTTGATCTCATTGTTGCGAGTGACTGCACCTTTTTTAAGGAATTCCACAATGGACTTGCTCAAATTGTCAAATTCTTGTTGGAAAAAGTGCGGCCCGCTGAAGCTATATTCTTCAGTCCTAAAAGAGGAGACTCCTTAGACAAGTTCCTAGAGAAAATCAAAGAAAGTAATTTGTGCTTCAGCATAACAGAAAATTATGATACAGAAATTTGGAAGCGCCATAACCAGCTTATGAATGGTGATGGTTCCTGGCCCAGCTACGAAAAAGATCACTGCTATCCCTTATTGGTCAGGATTGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Methyltransf_16

Protein Analysis

178

Amino Acids

20.07

Weight (kDa)

6.09

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	3 - 132	2.2e-21	Lysine methyltransferase
MTS	PF05175	4 - 82	9.4e-06	Methyltransferase small domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35987
fragaria_vesca	FvH4_1g11701
malus_domestica	MD02G1130100.v1.1 MD15G1244100.v1.1
prunus_persica	Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1 Prupe.7G169600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0099281
rosa_laevigata	RLG00000016868
rosa_multiflora	Rmu_sc0002025.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143250
rosa_rugosa	Rorug02G0078400
rosa_samantha	Rh2AG127700 Rh2BG130700 Rh2CG131900 Rh2DG132400
rosa_wichuraiana	Rw2G009860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	322, 327
AcsI	RAATTY	3 cut(s)	272, 302, 438
AcuI	CTGAAG	3 cut(s)	328, 351, 394
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	5 cut(s)	28, 50, 335, 460, 489
AluI	AGCT	5 cut(s)	28, 50, 335, 460, 489
Alw26I	GTCTC	1 cut(s)	354
AoxI	GGCC	2 cut(s)	323, 482
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	3 cut(s)	272, 302, 438
AspLEI	GCGC	2 cut(s)	135, 450
AspS9I	GGNCC	2 cut(s)	324, 483
AsuHPI	GGTGA	1 cut(s)	482
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	3 cut(s)	56, 225, 380
BfoI	RGCGCY	1 cut(s)	451
BisI	GCNGC	2 cut(s)	66, 323
BlsI	GCNGC	2 cut(s)	67, 324
Bme1390I	CCNGG	1 cut(s)	481
BmgT120I	GGNCC	2 cut(s)	324, 483
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	1 cut(s)	481
BmsI	GCATC	2 cut(s)	89, 133
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	372
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	325, 484
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	325, 484
Bsp143I	GATC	2 cut(s)	235, 499
BspACI	CCGC	2 cut(s)	322, 327
BspANI	GGCC	2 cut(s)	325, 484
BspLI	GGNNCC	1 cut(s)	478
BssMI	GATC	2 cut(s)	235, 499
Bst2UI	CCWGG	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	12, 367
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	451
BstHHI	GCGC	2 cut(s)	135, 450
BstKTI	GATC	2 cut(s)	238, 502
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	235, 499
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	479
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	325, 484
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	2 cut(s)	135, 450
Cfr13I	GGNCC	2 cut(s)	324, 483
Csp6I	GTAC	1 cut(s)	168
CviJI	RGCY	7 cut(s)	28, 50, 325, 335, 460, 484, 489
CviKI_1	RGCY	7 cut(s)	28, 50, 325, 335, 460, 484, 489
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	12, 367
DpnI	GATC	2 cut(s)	237, 501
DpnII	GATC	2 cut(s)	235, 499
Eco57I	CTGAAG	3 cut(s)	328, 351, 394
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	479
FaiI	YATR	9 cut(s)	42, 126, 185, 338, 416, 429, 453, 464, 535
FauI	CCCGC	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	66, 323
Fsp4HI	GCNGC	2 cut(s)	66, 323
FspBI	CTAG	3 cut(s)	56, 225, 380
GlaI	GCGC	2 cut(s)	134, 449
GluI	GCNGC	2 cut(s)	66, 323
GsaI	CCCAGC	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	451
HaeIII	GGCC	2 cut(s)	325, 484
HhaI	GCGC	2 cut(s)	135, 450
Hin6I	GCGC	2 cut(s)	133, 448
HinP1I	GCGC	2 cut(s)	133, 448
HinfI	GANTC	2 cut(s)	199, 362
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	3 cut(s)	85, 100, 204
Hpy188III	TCNNGA	1 cut(s)	523
HpyCH4V	TGCA	4 cut(s)	65, 193, 258, 530
HpyF3I	CTNAG	2 cut(s)	12, 367
HspAI	GCGC	2 cut(s)	133, 448
Kzo9I	GATC	2 cut(s)	235, 499
LpnPI	CCDG	7 cut(s)	21, 36, 466, 470, 493, 499, 508
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	89, 133
MaeI	CTAG	3 cut(s)	56, 225, 380
MaeIII	GTNAC	2 cut(s)	70, 251
MalI	GATC	2 cut(s)	237, 501
MboI	GATC	2 cut(s)	235, 499
MboII	GAAGA	1 cut(s)	334
MluCI	AATT	6 cut(s)	272, 294, 302, 400, 424, 438
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	2 cut(s)	70, 350
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
NdeII	GATC	2 cut(s)	235, 499
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	67, 324
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	2 cut(s)	324, 483
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	2 cut(s)	66, 323
Sau3AI	GATC	2 cut(s)	235, 499
Sau96I	GGNCC	2 cut(s)	324, 483
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	481
SetI	ASST	7 cut(s)	11, 30, 52, 263, 337, 462, 491
SfaNI	GCATC	2 cut(s)	89, 133
Sse9I	AATT	6 cut(s)	272, 294, 302, 400, 424, 438
SsiI	CCGC	2 cut(s)	322, 327
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	3 cut(s)	56, 225, 380
StyD4I	CCNGG	1 cut(s)	479
TasI	AATT	6 cut(s)	272, 294, 302, 400, 424, 438
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	509
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	222, 479
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	3 cut(s)	272, 302, 438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XspI	CTAG	3 cut(s)	56, 225, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.