MD15G1244100.v1.1

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009234
Physical Location & Seq
Forward (+)
20039114 .. 20041339
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1244100.v1.1.491

Sequence Viewer

Length: 306 bp
ATGACCAGCGGCAGCGGCGGACACGAAATCGCAGCTCCACTCATGAAGTCGATGATGTTGCATTGGAATCAGAACGAAATTTCTACTATCTCTGGCGAATTTGACCTCATTGTTGCGAGTGACTGCACTTTTTTGAAGGAATTCCACAATGGACTTGCTCAAATCCTCAAATTCCTGCTGGGAAAAGTGCAGCCCTCTGAAGCTATGTTCTTCGGTCCCAAAAGGGGCGTCTCCTTGGACGAGTTCTTAGAGAGAATCAAAGAATGTGATTTGCGCTTCAGCATAGCGGAGAATTATGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

102

Amino Acids

11.3

Weight (kDa)

5.04

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 16 - 88 5.2e-06 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 15, 18, 287
AcsI RAATTY 4 cut(s) 78, 98, 140, 170
AcuI CTGAAG 2 cut(s) 219, 262
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 224
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 2 cut(s) 35, 203
AluI AGCT 2 cut(s) 35, 203
Alw26I GTCTC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 12, 32, 190
ApoI RAATTY 4 cut(s) 78, 98, 140, 170
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BbvI GCAGC 3 cut(s) 24, 44, 202
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 1 cut(s) 235
BisI GCNGC 5 cut(s) 10, 13, 16, 33, 191
BlsI GCNGC 5 cut(s) 11, 14, 17, 34, 192
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 217
BmsI GCATC 1 cut(s) 289
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 224
BseXI GCAGC 3 cut(s) 24, 44, 202
BseYI CCCAGC 1 cut(s) 178
BsgI GTGCAG 2 cut(s) 109, 209
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 235
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 201
BspACI CCGC 4 cut(s) 9, 15, 18, 287
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 276
BstMAI GTCTC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 24, 44, 202
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 217
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 35, 193, 203
CviKI_1 RGCY 3 cut(s) 35, 193, 203
DdeI CTNAG 1 cut(s) 247
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 219, 262
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 1 cut(s) 46
FaiI YATR 5 cut(s) 44, 206, 284, 297, 304
FaqI GGGAC 1 cut(s) 201
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 5 cut(s) 10, 13, 16, 33, 191
Fsp4HI GCNGC 5 cut(s) 10, 13, 16, 33, 191
GlaI GCGC 1 cut(s) 275
GluI GCNGC 5 cut(s) 10, 13, 16, 33, 191
GsaI CCCAGC 1 cut(s) 182
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 1 cut(s) 46
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 2 cut(s) 67, 255
Hpy188I TCNGA 2 cut(s) 72, 199
Hpy188III TCNNGA 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 61, 126, 190, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 247
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 46
HspAI GCGC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 19, 78, 164, 188
Lsp1109I GCAGC 3 cut(s) 24, 44, 202
LweI GCATC 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 119
MboII GAAGA 1 cut(s) 202
MluCI AATT 5 cut(s) 78, 98, 140, 170, 292
MnlI CCTC 3 cut(s) 116, 176, 205
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 9, 15
MwoI GCNNNNNNNGC 1 cut(s) 15
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 119
NsiI ATGCAT 1 cut(s) 304
PagI TCATGA 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 67, 255
PkrI GCNGC 5 cut(s) 11, 14, 17, 34, 192
PspFI CCCAGC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 215
SatI GCNGC 5 cut(s) 10, 13, 16, 33, 191
Sau96I GGNCC 1 cut(s) 215
SetI ASST 3 cut(s) 37, 108, 205
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 215
Sse9I AATT 5 cut(s) 78, 98, 140, 170, 292
SsiI CCGC 4 cut(s) 9, 15, 18, 287
StyI CCWWGG 1 cut(s) 234
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 203
TasI AATT 5 cut(s) 78, 98, 140, 170, 292
TauI GCSGC 2 cut(s) 12, 18
TfiI GAWTC 2 cut(s) 67, 255
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 3 cut(s) 12, 32, 190
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 4 cut(s) 78, 98, 140, 170
XmnI GAANNNNTTC 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.